mRNA_H-elongata_contig20091.5658.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20091.5658.1
Unique NamemRNA_H-elongata_contig20091.5658.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig20091.5658.1 vs. uniprot
Match: D7FR80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR80_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.330e-9
Identity = 30/69 (43.48%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:  112 RSLQRWRQEEXXXXXXXXXXXXXXRR-DYGTEDVRMCLSGCPYTSKDGTRGRVCDVSCENGEPYGIKGC 315
            RS +RW ++               +R DYG++    C++ C +TS DGTRGRVCD +CENG PYG  GC
Sbjct:  368 RSFRRWGEDRELEEGPEWQTERKWKRFDYGSDS---CMAKCEHTSNDGTRGRVCDSTCENGHPYGDLGC 433
[Close]
BLAST of mRNA_H-elongata_contig20091.5658.1 vs. uniprot
Match: D7FI38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI38_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 4.220e-9
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:  184 RRDYGTEDVRMCLSGCPYTSKDGTRGRVCDVSCENGEPYGIKGCG 318
            RR +  ++   CL GC YTSKDGTRGRVCD +C   + YG  GCG
Sbjct:  238 RRGHAGDETPKCLDGCEYTSKDGTRGRVCDANCSRRDVYGTLGCG 282
[Close]
BLAST of mRNA_H-elongata_contig20091.5658.1 vs. uniprot
Match: A0A6H5L353_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L353_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.350e-9
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:  217 CLSGCPYTSKDGTRGRVCDVSCENGEPYGIKGC 315
            C  GC YTS DGTRGRVCD+SC+ GEPYG  GC
Sbjct:  284 CFDGCTYTSHDGTRGRVCDLSCKTGEPYGTYGC 316
[Close]
BLAST of mRNA_H-elongata_contig20091.5658.1 vs. uniprot
Match: D8LTR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR8_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 7.890e-9
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:  217 CLSGCPYTSKDGTRGRVCDVSCENGEPYGIKGC 315
            C  GC YTS+DGT+GRVCD+SC+ GEPYG  GC
Sbjct:  566 CFDGCTYTSRDGTKGRVCDLSCKTGEPYGTYGC 598
[Close]
BLAST of mRNA_H-elongata_contig20091.5658.1 vs. uniprot
Match: A0A6H5LJP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJP6_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.860e-8
Identity = 24/40 (60.00%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:  199 TEDVRMCLSGCPYTSKDGTRGRVCDVSCENGEPYGIKGCG 318
            + D   CL GC YTSKDGTRGRVCD +C   + YG  GCG
Sbjct:  528 SSDEEGCLDGCEYTSKDGTRGRVCDSNCSRSDAYGTLGCG 567
[Close]
BLAST of mRNA_H-elongata_contig20091.5658.1 vs. uniprot
Match: D7FI37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI37_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 7.330e-8
Identity = 48/117 (41.03%), Postives = 58/117 (49.57%), Query Frame = 1 
Query:   25 CDTLAPVPSVYDARNATATVDTESPPNVARSLQ----------------RWRQEEXXXXXXXXXXXXXX---RRDYGTEDVRMCLSGCPYTSKDGTRGRVCDVSCENGEPYGIKGCG 318
            C T  PV  VY  R   A  D  +P  VAR L+                +WR +E      XXXXXXXX   ++   + D   C+ GC YTSKDGTRGRVCD +C +   YG  GCG
Sbjct: 1166 CSTKMPV-DVYGRRLTPA--DESNPLLVARDLEALQKDEVHRQLSEDVPKWRAQEKWKNNTXXXXXXXXXXXKQYEDSSDEEGCMDGCEYTSKDGTRGRVCDSNCSSSNVYGTLGCG 1279
[Close]
BLAST of mRNA_H-elongata_contig20091.5658.1 vs. uniprot
Match: A0A6H5L4M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M7_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.050e-6
Identity = 22/34 (64.71%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:  217 CLSGCPYTSKDGTRGRVCDVSCENGEPYGIKGCG 318
            C S C YTSKDGT+GRVCD +C     YG KGCG
Sbjct:  421 CSSRCTYTSKDGTKGRVCDSNCSTPNVYGTKGCG 454
[Close]
BLAST of mRNA_H-elongata_contig20091.5658.1 vs. uniprot
Match: D8LTU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU7_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 6.920e-6
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:  217 CLSGCPYTSKDGTRGRVCDVSCENGEPYGIKGC 315
            C   C YTS DGT GR CD +C++GEPYG+ GC
Sbjct:   44 CDDTCEYTSTDGTTGRTCDPTCDDGEPYGVYGC 76
[Close]
BLAST of mRNA_H-elongata_contig20091.5658.1 vs. uniprot
Match: D7FI63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI63_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 7.760e-6
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:  217 CLSGCPYTSKDGTRGRVCDVSCENGEPYGIKGC 315
            C S C YTS+DGTRGRVCD +C   + YG +GC
Sbjct:  877 CSSSCEYTSRDGTRGRVCDANCSTPDVYGTRGC 909
[Close]
BLAST of mRNA_H-elongata_contig20091.5658.1 vs. uniprot
Match: A0A6H5JHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHL7_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.400e-5
Identity = 20/34 (58.82%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:  214 MCLSGCPYTSKDGTRGRVCDVSCENGEPYGIKGC 315
            MC S C YTS+DGTRGRVCD +C   + YG + C
Sbjct:  298 MCSSSCEYTSRDGTRGRVCDANCSTPDVYGTREC 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20091.5658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FR80_ECTSI2.330e-943.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI38_ECTSI4.220e-955.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L353_9PHAE7.350e-972.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTR8_ECTSI7.890e-969.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LJP6_9PHAE3.860e-860.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI37_ECTSI7.330e-841.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4M7_9PHAE4.050e-664.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTU7_ECTSI6.920e-660.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI63_ECTSI7.760e-660.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHL7_9PHAE1.400e-558.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20091contigH-elongata_contig20091:2318..2799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930129.9337687-CDS-H-elongata_contig20091:2317..25321622930129.9337687-CDS-H-elongata_contig20091:2317..2532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20091 2318..2532 +
1691679292.5695007-CDS-H-elongata_contig20091:2317..25321691679292.5695007-CDS-H-elongata_contig20091:2317..2532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20091 2318..2532 +
1622930129.9456666-CDS-H-elongata_contig20091:2694..27971622930129.9456666-CDS-H-elongata_contig20091:2694..2797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20091 2695..2797 +
1691679292.5779295-CDS-H-elongata_contig20091:2694..27971691679292.5779295-CDS-H-elongata_contig20091:2694..2797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20091 2695..2797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20091.5658.1prot_H-elongata_contig20091.5658.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20091 2318..2797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20091.5658.1

>prot_H-elongata_contig20091.5658.1 ID=prot_H-elongata_contig20091.5658.1|Name=mRNA_H-elongata_contig20091.5658.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
HFRRDDCRCDTLAPVPSVYDARNATATVDTESPPNVARSLQRWRQEEKWR
ENENWKTLEKWRRDYGTEDVRMCLSGCPYTSKDGTRGRVCDVSCENGEPY
GIKGCG
back to top

mRNA from alignment at H-elongata_contig20091:2318..2799+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20091.5658.1 ID=mRNA_H-elongata_contig20091.5658.1|Name=mRNA_H-elongata_contig20091.5658.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=482bp|location=Sequence derived from alignment at H-elongata_contig20091:2318..2799+ (Himanthalia elongata Himel1 dioecious)
CATTTTCGGCGTGATGATTGCAGGTGCGACACATTGGCGCCTGTCCCGTC
CGTGTATGATGCGCGTAACGCCACTGCCACGGTCGATACCGAGAGTCCCC
CTAATGTAGCGCGAAGTCTGCAGAGGTGGAGGCAAGAAGAAAAGTGGCGG
GAGAATGAGAATTGGAAGACCCTTGAGAAGTGGCGCAGGGACTACGGCAC
CGAGGACGTTCGTATGTGAGCAAAGCTGTACGTTTTCCATGTAGATCGTA
CCACGGACACAAAGGAATATCACCTGTCCGATAATCCCGGAGGGTGTAGT
CACCATGACGACCGTTCCGTAGCTCATGCTGTGCCGTACACCATGCCTTA
TCGGGCCTTGTCGTCCGATGCCGACAGGTGCCTCTCCGGCTGCCCCTACA
CCAGTAAAGACGGGACCAGGGGGCGTGTGTGCGATGTTTCGTGTGAGAAC
GGAGAACCCTATGGTATTAAAGGCTGCGGGGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20091:2318..2799+

>mRNA_H-elongata_contig20091.5658.1 ID=mRNA_H-elongata_contig20091.5658.1|Name=mRNA_H-elongata_contig20091.5658.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig20091:2318..2799+ (Himanthalia elongata Himel1 dioecious)
CATTTTCGGCGTGATGATTGCAGGTGCGACACATTGGCGCCTGTCCCGTC
CGTGTATGATGCGCGTAACGCCACTGCCACGGTCGATACCGAGAGTCCCC
CTAATGTAGCGCGAAGTCTGCAGAGGTGGAGGCAAGAAGAAAAGTGGCGG
GAGAATGAGAATTGGAAGACCCTTGAGAAGTGGCGCAGGGACTACGGCAC
CGAGGACGTTCGTATCATTTTCGGCGTGATGATTGCAGGTGCGACACATT
GGCGCCTGTCCCGTCCGTGTATGATGCGCGTAACGCCACTGCCACGGTCG
ATACCGAGAGTCCCCCTAATGTAGCGCGAAGTCTGCAGAGGTGGAGGCAA
GAAGAAAAGTGGCGGGAGAATGAGAATTGGAAGACCCTTGAGAAGTGGCG
CAGGGACTACGGCACCGAGGACGTTCGTATGTGCCTCTCCGGCTGCCCCT
ACACCAGTAAAGACGGGACCAGGGGGCGTGTGTGCGATGTTTCGTGTGAG
AACGGAGAACCCTATGGTATTAAAGGCTGCGGGGTGCCTCTCCGGCTGCC
CCTACACCAGTAAAGACGGGACCAGGGGGCGTGTGTGCGATGTTTCGTGT
GAGAACGGAGAACCCTATGGTATTAAAGGCTGCGGG
back to top