mRNA_H-elongata_contig20088.5657.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20088.5657.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI) HSP 1 Score: 177 bits (450), Expect = 5.980e-49 Identity = 86/166 (51.81%), Postives = 109/166 (65.66%), Query Frame = 1
Query: 19 SSSSYDDDAAVEAVLA-ACSYNTYMCCWTQNDEK--IEDNTDVCRVVDSPSEGETTEYPGDSEGPTYCHGFGWETDDEFLAVQLPLYNYVINYDQ-DYQGYYGNIEGAPACGCIEEMPVVSYSNCTTFTMNELTACQANDLSKHHKNRLQAPGGDLDFNLVGTCDN 504
S S+YD+D V +L C +NTYMCCWT +D + NTDVCRV+D P EG+ E P D EGP YCHGF W + + LPLY+YV N ++ D GYYGN+EG P+CGCIE+MPVVS + C+ F + C AN L H+KNRL P G+L++NLV CDN
Sbjct: 117 SCSTYDEDVDVANILPETCEWNTYMCCWTGHDGSGGMYGNTDVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADGADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSRFGREGIEPCGANSLRSHYKNRLDEPKGELEYNLVRECDN 282
BLAST of mRNA_H-elongata_contig20088.5657.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI) HSP 1 Score: 168 bits (425), Expect = 2.140e-47 Identity = 83/164 (50.61%), Postives = 107/164 (65.24%), Query Frame = 1
Query: 25 SSYDDDAAVEAVLAA-CSYNTYMCCWTQND--EKIEDNTDVCRVVDSPSEGETTEYPGDSEGPTYCHGFGWETDDEFLAVQLPLYNYVINYDQDYQG-YYGNIEGAPACGCIEEMPVVSYSNCTTFTMNELTACQANDLSKHHKNRLQAPGGDLDFNLVGTCDN 504
S+YD+D V +L C +NTYMCCWT ND + + NTDVCRV D P EG + E+P DSEG YCHGFGW + LPLY+ VIN + +G YYGN+EGAP CGC+EEMPVVS+S C+ F + +T C + L ++ +R+ P G L+ NLV CDN
Sbjct: 96 STYDEDVHVAYLLPEMCEWNTYMCCWTGNDGPDGMTSNTDVCRVWDYPEEGNSLEFPRDSEGSVYCHGFGWADGADVNTNILPLYHSVINTGRTEEGGYYGNVEGAPQCGCLEEMPVVSFSECSRFDGDGITDCGEHGLYSNYVSRIDEPNGPLEDNLVRICDN 259
BLAST of mRNA_H-elongata_contig20088.5657.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI) HSP 1 Score: 169 bits (427), Expect = 3.110e-47 Identity = 88/154 (57.14%), Postives = 108/154 (70.13%), Query Frame = 1
Query: 67 ACSYNTYMCCWTQND-EKIEDNTDVCRVVDSPSEGETTEYPGDSEGPTYCHGFGWETDDEFLAVQLPLYNYVINYD-QDYQGYYGNIEGAPACGCIEEMPVVSYSNCTTFTMN-----ELTACQANDLSKHHKNRLQAPGGDLDFNLVGTCDNA 507
+CS+NTYMCCWT+ND E + DNTDVCRVVD PS GET E+PGDSEG +CHGF W D + L L +V N+D +D +GYYGNIEGAP CGCIEEMPVVS ++CTT+ + + TAC NDL ++ + P G+L NLV TCDNA
Sbjct: 321 SCSHNTYMCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDATDKYIHL-LSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLRTRYE--AEYPTGEL-ANLVDTCDNA 470
BLAST of mRNA_H-elongata_contig20088.5657.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI) HSP 1 Score: 168 bits (426), Expect = 5.740e-47 Identity = 81/166 (48.80%), Postives = 107/166 (64.46%), Query Frame = 1
Query: 19 SSSSYDDDAAVEAVLA-ACSYNTYMCCWTQND--EKIEDNTDVCRVVDSPSEGETTEYPGDSEGPTYCHGFGWETDDEFLAVQLPLYNYVINYDQ-DYQGYYGNIEGAPACGCIEEMPVVSYSNCTTFTMNELTACQANDLSKHHKNRLQAPGGDLDFNLVGTCDN 504
S S+YD+D V +L C +NTYMCCWT +D + + N DVCRV+D P EG+ E P D EGP YCHGF W D + + LPLY+YV N ++ D GYYGN+EG P+CGCIE+MPVVS + C+ F + C N L +K +L P G++++NLV CDN
Sbjct: 160 SCSTYDEDVDVATILPETCEWNTYMCCWTGHDGSKGMYGNADVCRVLDYPEEGDVLELPRDDEGPVYCHGFAWADDADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDN 325
BLAST of mRNA_H-elongata_contig20088.5657.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI) HSP 1 Score: 157 bits (396), Expect = 1.050e-45 Identity = 82/168 (48.81%), Postives = 107/168 (63.69%), Query Frame = 1
Query: 19 SSSSYDDDAAVEAVL-AACSYNTYMCCWTQND--EKIEDNTDVCRVVDSPSEGETTEYPGDSEGPTYCHGFGWETDDEFLAVQLPLYNYVINYDQDYQ--GYYGNIEGAPACGCIEEMPVVSYSNCTTFTMNELTACQANDLSKHHKNRLQAPGGDLDFNLVGTCDNA 507
S S+YD+D V +L C ++TYMCC+T +D E + NTDVC V PSEG E PGDSEGP YCHGF W + LPLY+YV N + + GYYGN+EGAP CGCIEEMP VS++ C+ F+++ + C L + RL AP G+++ NLV +CDNA
Sbjct: 20 SCSTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV---PSEG--LEMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLDAPYGEMEHNLVRSCDNA 182
BLAST of mRNA_H-elongata_contig20088.5657.1 vs. uniprot
Match: A0A6H5JT81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT81_9PHAE) HSP 1 Score: 157 bits (396), Expect = 1.280e-44 Identity = 72/148 (48.65%), Postives = 96/148 (64.86%), Query Frame = 1
Query: 70 CSYNTYMCCWTQND--EKIEDNTDVCRVVDSPSEGETTEYPGDSEGPTYCHGFGWETDDEFLAVQLPLYNYVINYDQ-DYQGYYGNIEGAPACGCIEEMPVVSYSNCTTFTMNELTACQANDLSKHHKNRLQAPGGDLDFNLVGTCDN 504
C +NTYMCCWT +D + + N DVCRV++ P EG+ E P D EGP YCHGF W + + LPLY+YV N ++ D GYYGN+EG P+CGCIE+MPVVS + C+ F + C N L +K +L P G++++NLV CDN
Sbjct: 14 CEWNTYMCCWTGHDGSKGMYGNADVCRVLNYPEEGDVLELPRDDEGPVYCHGFAWADGADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDN 161
BLAST of mRNA_H-elongata_contig20088.5657.1 vs. uniprot
Match: A0A6H5L9G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE) HSP 1 Score: 132 bits (332), Expect = 4.700e-36 Identity = 70/168 (41.67%), Postives = 97/168 (57.74%), Query Frame = 1
Query: 19 SSSSYDDDAAVEAVLA-ACSYNTYMCCWTQND--EKIEDNTDVCRVVDSPSEGETTEYPGDSEGPTYCHGFGWETDDEFLAVQLPLYNYVINYDQDYQ--GYYGNIEGAPACGCIEEMPVVSYSNCTTFTMNELTACQANDLSKHHKNRLQAPGGDLDFNLVGTCDNA 507
S ++YD+D V +L C ++TYMCC+T +D E + NTDVC V +EG YCHGF W + LPLY+YV N + + GYYG++EGAP CGCIEEMP VS++ C+ F ++ + C L + RL AP G+++ NLV +CDNA
Sbjct: 27 SCTTYDEDLEVAKLLDDTCEWDTYMCCFTNHDSGEGVTANTDVCSVP--------------NEGSVYCHGFAWPDGADVNNHILPLYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDGIVGCGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA 180
BLAST of mRNA_H-elongata_contig20088.5657.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE) HSP 1 Score: 133 bits (335), Expect = 5.220e-34 Identity = 71/171 (41.52%), Postives = 100/171 (58.48%), Query Frame = 1
Query: 19 SSSSYDDDAAVEAVL-AACSYNTYMCCWTQND--EKIEDNTDVCRVVDSPSEGETTEYPGDSEGPTYCHGFGWETDDEFLAVQLPLYNYVINYDQDYQ-GYY-----GNIEGAPACGCIEEMPVVSYSNCTTFTMNELTACQANDLSKHHKNRLQAPGGDLDFNLVGTCDN 504
S S+Y++ V +L + C ++ YMCCWT ND + + N+DVCRV+D P EG++ E P +SEG CHGF W + LPLY+YV N + + G+Y ++EG P CGCIEE+P VS S C+ ++ + C N L ++ L P G +D NLV TCDN
Sbjct: 28 SCSTYEEHVEVAKLLDSTCEWDPYMCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGLLSQYRGCLGEPCGPMDDNLVRTCDN 198
BLAST of mRNA_H-elongata_contig20088.5657.1 vs. uniprot
Match: A0A7S2I1I6_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I1I6_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.660e-16 Identity = 54/165 (32.73%), Postives = 77/165 (46.67%), Query Frame = 1
Query: 70 CSYNTYMCCWTQNDEKIE---------------DNTDVCRV--VDSPSEGETTE----YPGDSEGPTYCHGFGWETDDEFLAVQLPLYNYVINYDQDYQGYYGNIEGAPACGCIEEMPVVSYSNCTTFTMNELTACQANDLSKHHKNRLQAPGGDLDFNLVGTCD 501
C + MCCWT + + DNTDVC V +SP T + +PGD+EGP +C GF W+ DE + V+ GY N+ GAP CGC+E+MPVVS++ C+ +N L +L + R+ G ++ F G CD
Sbjct: 147 CHHRAAMCCWTADKYNVGGGSCTSAGCADGDPLDNTDVCHVDMKNSPLAAHTRDGVAVFPGDAEGPVHCQGFAWDEKDEMFRGNALFH--VVMKGLLSNGYTRNVPGAPMCGCVEQMPVVSHAVCSNTDVN-LQVTLVKELEEEL--RIYIGGKNISF---GNCD 303
BLAST of mRNA_H-elongata_contig20088.5657.1 vs. uniprot
Match: A0A7S1CX31_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CX31_CYCTE) HSP 1 Score: 84.0 bits (206), Expect = 2.370e-16 Identity = 57/176 (32.39%), Postives = 72/176 (40.91%), Query Frame = 1
Query: 61 LAACSYNTYMCCWTQN-------------------DEKIEDNTDVCRV--VDSPSEGETTE----YPGDSEGPTYCHGFGWETDDEFLAVQLPLYN--YVINYDQ-DYQGYYGNIEGAPACGCIEEMPVVSYSNCTTFTMNELTACQANDLSKHHKNRLQAPGGDLDFNLVGTCDN 504
A C MCCWTQ+ D DNTDVC V SP + Y D EG +CHGF W+T+ + Q N YV YD +GY N+ GAP C C+E+MPVV+ S+CT E K + ++DFN DN
Sbjct: 63 FAECDLRAVMCCWTQDRQANDDNGNCAEPYDENCVDADPADNTDVCYVDMERSPESNRVQQGLAVYENDDEGDAHCHGFAWDTNPNHESAQYKGVNLLYVSMYDHLSERGYVRNVPGAPMCACVEQMPVVTRSDCTEI---EFIKSWTGYTLSGDKLSMYITYSEVDFNACQGADN 235 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20088.5657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20088.5657.1 >prot_H-elongata_contig20088.5657.1 ID=prot_H-elongata_contig20088.5657.1|Name=mRNA_H-elongata_contig20088.5657.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp SAERATSSSSYDDDAAVEAVLAACSYNTYMCCWTQNDEKIEDNTDVCRVVback to top mRNA from alignment at H-elongata_contig20088:1823..3115- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20088.5657.1 ID=mRNA_H-elongata_contig20088.5657.1|Name=mRNA_H-elongata_contig20088.5657.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1293bp|location=Sequence derived from alignment at H-elongata_contig20088:1823..3115- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20088:1823..3115- >mRNA_H-elongata_contig20088.5657.1 ID=mRNA_H-elongata_contig20088.5657.1|Name=mRNA_H-elongata_contig20088.5657.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig20088:1823..3115- (Himanthalia elongata Himel1 dioecious)back to top |