mRNA_H-elongata_contig200826.5656.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig200826.5656.1
Unique NamemRNA_H-elongata_contig200826.5656.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig200826.5656.1 vs. uniprot
Match: D7FI31_ECTSI (Glycerol-3-phosphate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI31_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 6.660e-11
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:    1 QALSRNHVIEVSPSKLVTITGGKWTTFRRMAE 96
            +ALSRNHVIEVS SKLVTITGGKWTTFRRMAE
Sbjct:  265 KALSRNHVIEVSDSKLVTITGGKWTTFRRMAE 296
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BLAST of mRNA_H-elongata_contig200826.5656.1 vs. uniprot
Match: A0A183X1I4_TRIRE (DAO domain-containing protein n=1 Tax=Trichobilharzia regenti TaxID=157069 RepID=A0A183X1I4_TRIRE)

HSP 1 Score: 57.8 bits (138), Expect = 2.110e-9
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    1 QALSRNHVIEVSPSKLVTITGGKWTTFRRMAE 96
            Q+++RNH+I VSPSKL+TI GGKWTT+R MAE
Sbjct:   87 QSIARNHIINVSPSKLITIAGGKWTTYRNMAE 118
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BLAST of mRNA_H-elongata_contig200826.5656.1 vs. uniprot
Match: A0A183RYP7_9TREM (DAO_C domain-containing protein n=1 Tax=Schistosoma rodhaini TaxID=6188 RepID=A0A183RYP7_9TREM)

HSP 1 Score: 58.2 bits (139), Expect = 3.630e-9
Identity = 23/32 (71.88%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    1 QALSRNHVIEVSPSKLVTITGGKWTTFRRMAE 96
            Q+++RNH+I+VSPSKL+TI GGKWTT+R MAE
Sbjct:   29 QSIARNHIIDVSPSKLITIAGGKWTTYRSMAE 60
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BLAST of mRNA_H-elongata_contig200826.5656.1 vs. uniprot
Match: UPI000C200BE6 (glycerol-3-phosphate dehydrogenase, mitochondrial n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C200BE6)

HSP 1 Score: 58.9 bits (141), Expect = 3.850e-9
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 QALSRNHVIEVSPSKLVTITGGKWTTFRRMAEVLI 105
            Q+L+RNH+I VSPSKL+TI GGKWTT+R MAE  I
Sbjct:  409 QSLARNHIIHVSPSKLITIAGGKWTTYRHMAEETI 443
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BLAST of mRNA_H-elongata_contig200826.5656.1 vs. uniprot
Match: UPI000D73D470 (glycerol-3-phosphate dehydrogenase, mitochondrial-like isoform X3 n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D73D470)

HSP 1 Score: 58.9 bits (141), Expect = 3.850e-9
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    1 QALSRNHVIEVSPSKLVTITGGKWTTFRRMAE 96
            Q+++RNHVIEVSPS+L+TI GGKWTT+R MAE
Sbjct:  436 QSIARNHVIEVSPSRLITIAGGKWTTYRHMAE 467
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BLAST of mRNA_H-elongata_contig200826.5656.1 vs. uniprot
Match: Q5C2A1_SCHJA (SJCHGC04425 protein (Fragment) n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=Q5C2A1_SCHJA)

HSP 1 Score: 58.2 bits (139), Expect = 4.060e-9
Identity = 23/32 (71.88%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    1 QALSRNHVIEVSPSKLVTITGGKWTTFRRMAE 96
            Q+++RNH+I+VSPSKL+TI GGKWTT+R MAE
Sbjct:   87 QSIARNHIIDVSPSKLITIAGGKWTTYRSMAE 118
[Close]
BLAST of mRNA_H-elongata_contig200826.5656.1 vs. uniprot
Match: A0A8J4SIB0_9TREM (Glycerol-3-phosphate dehydrogenase mitochondrial n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4SIB0_9TREM)

HSP 1 Score: 58.5 bits (140), Expect = 5.270e-9
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    1 QALSRNHVIEVSPSKLVTITGGKWTTFRRMAE 96
            Q+++RNHVIEVSPS+L+TI GGKWTT+R MAE
Sbjct:  303 QSIARNHVIEVSPSRLITIAGGKWTTYRSMAE 334
[Close]
BLAST of mRNA_H-elongata_contig200826.5656.1 vs. uniprot
Match: A0A430Q8I2_SCHBO (Glycerol-3-phosphate dehydrogenase n=1 Tax=Schistosoma bovis TaxID=6184 RepID=A0A430Q8I2_SCHBO)

HSP 1 Score: 58.2 bits (139), Expect = 6.860e-9
Identity = 23/32 (71.88%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    1 QALSRNHVIEVSPSKLVTITGGKWTTFRRMAE 96
            Q+++RNH+I+VSPSKL+TI GGKWTT+R MAE
Sbjct:   87 QSIARNHIIDVSPSKLITIAGGKWTTYRSMAE 118
[Close]
BLAST of mRNA_H-elongata_contig200826.5656.1 vs. uniprot
Match: Q9UAF3_POLMI (Glycerin-3-phosphate dehydrogenase (Fragment) n=1 Tax=Polyandrocarpa misakiensis TaxID=7723 RepID=Q9UAF3_POLMI)

HSP 1 Score: 57.0 bits (136), Expect = 6.980e-9
Identity = 23/31 (74.19%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:    1 QALSRNHVIEVSPSKLVTITGGKWTTFRRMA 93
            Q++SRNHV++VSPSKL+TI GGKWTT+R MA
Sbjct:   10 QSISRNHVVDVSPSKLITIAGGKWTTYRSMA 40
[Close]
BLAST of mRNA_H-elongata_contig200826.5656.1 vs. uniprot
Match: A0A6A5DJY3_SCHHA (Glycerol-3-phosphate dehydrogenase n=2 Tax=Schistosoma haematobium TaxID=6185 RepID=A0A6A5DJY3_SCHHA)

HSP 1 Score: 58.2 bits (139), Expect = 7.140e-9
Identity = 23/32 (71.88%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    1 QALSRNHVIEVSPSKLVTITGGKWTTFRRMAE 96
            Q+++RNH+I+VSPSKL+TI GGKWTT+R MAE
Sbjct:  364 QSIARNHIIDVSPSKLITIAGGKWTTYRSMAE 395
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200826.5656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI31_ECTSI6.660e-1193.75Glycerol-3-phosphate dehydrogenase n=1 Tax=Ectocar... [more]
A0A183X1I4_TRIRE2.110e-971.88DAO domain-containing protein n=1 Tax=Trichobilhar... [more]
A0A183RYP7_9TREM3.630e-971.88DAO_C domain-containing protein n=1 Tax=Schistosom... [more]
UPI000C200BE63.850e-971.43glycerol-3-phosphate dehydrogenase, mitochondrial ... [more]
UPI000D73D4703.850e-975.00glycerol-3-phosphate dehydrogenase, mitochondrial-... [more]
Q5C2A1_SCHJA4.060e-971.88SJCHGC04425 protein (Fragment) n=1 Tax=Schistosoma... [more]
A0A8J4SIB0_9TREM5.270e-975.00Glycerol-3-phosphate dehydrogenase mitochondrial n... [more]
A0A430Q8I2_SCHBO6.860e-971.88Glycerol-3-phosphate dehydrogenase n=1 Tax=Schisto... [more]
Q9UAF3_POLMI6.980e-974.19Glycerin-3-phosphate dehydrogenase (Fragment) n=1 ... [more]
A0A6A5DJY3_SCHHA7.140e-971.88Glycerol-3-phosphate dehydrogenase n=2 Tax=Schisto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig200826contigH-elongata_contig200826:829..933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930129.8377569-CDS-H-elongata_contig200826:828..9331622930129.8377569-CDS-H-elongata_contig200826:828..933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200826 829..933 +
1691679292.5201144-CDS-H-elongata_contig200826:828..9331691679292.5201144-CDS-H-elongata_contig200826:828..933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200826 829..933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig200826.5656.1prot_H-elongata_contig200826.5656.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig200826 829..933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig200826.5656.1

>prot_H-elongata_contig200826.5656.1 ID=prot_H-elongata_contig200826.5656.1|Name=mRNA_H-elongata_contig200826.5656.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
QALSRNHVIEVSPSKLVTITGGKWTTFRRMAEVLI
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mRNA from alignment at H-elongata_contig200826:829..933+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig200826.5656.1 ID=mRNA_H-elongata_contig200826.5656.1|Name=mRNA_H-elongata_contig200826.5656.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=105bp|location=Sequence derived from alignment at H-elongata_contig200826:829..933+ (Himanthalia elongata Himel1 dioecious)
CAGGCCCTCTCGCGCAACCACGTGATCGAGGTAAGCCCTTCGAAGCTGGT
GACCATCACGGGGGGCAAGTGGACGACCTTCCGACGGATGGCAGAGGTAC
TAATA
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Coding sequence (CDS) from alignment at H-elongata_contig200826:829..933+

>mRNA_H-elongata_contig200826.5656.1 ID=mRNA_H-elongata_contig200826.5656.1|Name=mRNA_H-elongata_contig200826.5656.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at H-elongata_contig200826:829..933+ (Himanthalia elongata Himel1 dioecious)
CAGGCCCTCTCGCGCAACCACGTGATCGAGGTAAGCCCTTCGAAGCTGGT
GACCATCACGGGGGGCAAGTGGACGACCTTCCGACGGATGGCAGAGGTAC
TAATACAGGCCCTCTCGCGCAACCACGTGATCGAGGTAAGCCCTTCGAAG
CTGGTGACCATCACGGGGGGCAAGTGGACGACCTTCCGACGGATGGCAGA
GGTACTAATA
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