mRNA_H-elongata_contig200794.5655.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig200794.5655.1
Unique NamemRNA_H-elongata_contig200794.5655.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig200794.5655.1 vs. uniprot
Match: D7FZ71_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ71_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 4.560e-17
Identity = 46/69 (66.67%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:   46 KSRSMEGGGAAVGAVGVEAAVAADHDDVLEAPTAPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQV 252
            + R  EGGG A G            D+ LEAP  PRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQ+
Sbjct:  109 RQRGEEGGGRAGG------------DESLEAPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQL 165
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BLAST of mRNA_H-elongata_contig200794.5655.1 vs. uniprot
Match: A0A6H5LCQ5_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCQ5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 6.340e-17
Identity = 48/74 (64.86%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:   37 RPSKSRSM--EGGGAAVGAVGVEAAVAADHDDVLEAPTAPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQV 252
            R ++ RS+  EGGG A G            D+ LEAP  PRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQ+
Sbjct:   91 REARPRSLREEGGGGAGG------------DESLEAPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQL 152
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BLAST of mRNA_H-elongata_contig200794.5655.1 vs. uniprot
Match: A0A836CI56_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI56_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.460e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:  139 PTAPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQV 252
            PTA  RRRGRKG+SIYRGVCVTREGKWRAVIYKERKQ+
Sbjct:   18 PTA--RRRGRKGKSIYRGVCVTREGKWRAVIYKERKQL 53
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BLAST of mRNA_H-elongata_contig200794.5655.1 vs. uniprot
Match: A0A6H5JUY3_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 4.020e-11
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:  133 EAPTAPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQV 252
            +APT   RRRGR+G+S+YRGVCVTREGKWRAVIYKERKQ+
Sbjct:   91 KAPTT-HRRRGRRGKSVYRGVCVTREGKWRAVIYKERKQL 129
[Close]
BLAST of mRNA_H-elongata_contig200794.5655.1 vs. uniprot
Match: A0A836CH07_9STRA (AP2/ERF domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH07_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.740e-7
Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 1 
Query:  184 YRGVCVTREGKWRAVIYKERKQV 252
            YRGVCVTREGKWRAVIYKERKQ+
Sbjct:    1 YRGVCVTREGKWRAVIYKERKQL 23
[Close]
BLAST of mRNA_H-elongata_contig200794.5655.1 vs. uniprot
Match: A0A835ZDL0_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.610e-6
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:  151 RRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQV 252
            R RRGRKG+SIYRGV  TREGK+RAV+Y ERKQ+
Sbjct:  123 RPRRGRKGKSIYRGVSHTREGKYRAVLYVERKQI 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200794.5655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FZ71_ECTSI4.560e-1766.67AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5LCQ5_9PHAE6.340e-1764.86AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
A0A836CI56_9STRA2.460e-1289.47AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5JUY3_9PHAE4.020e-1180.00AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
A0A836CH07_9STRA5.740e-795.65AP2/ERF domain-containing protein (Fragment) n=1 T... [more]
A0A835ZDL0_9STRA1.610e-676.47AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig200794contigH-elongata_contig200794:346..615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930129.8030715-CDS-H-elongata_contig200794:345..6151622930129.8030715-CDS-H-elongata_contig200794:345..615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200794 346..615 +
1691679292.5068567-CDS-H-elongata_contig200794:345..6151691679292.5068567-CDS-H-elongata_contig200794:345..615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200794 346..615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig200794.5655.1prot_H-elongata_contig200794.5655.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig200794 346..615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig200794.5655.1

>prot_H-elongata_contig200794.5655.1 ID=prot_H-elongata_contig200794.5655.1|Name=mRNA_H-elongata_contig200794.5655.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
ASLASSVQVASSRPSKSRSMEGGGAAVGAVGVEAAVAADHDDVLEAPTAP
RRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQVRRFCG*
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mRNA from alignment at H-elongata_contig200794:346..615+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig200794.5655.1 ID=mRNA_H-elongata_contig200794.5655.1|Name=mRNA_H-elongata_contig200794.5655.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig200794:346..615+ (Himanthalia elongata Himel1 dioecious)
GCTTCGTTAGCTTCGTCTGTACAGGTAGCTTCATCGAGGCCATCGAAGTC
AAGATCGATGGAGGGAGGAGGGGCAGCGGTGGGGGCGGTGGGGGTAGAGG
CGGCCGTGGCGGCGGACCATGATGATGTTTTGGAGGCCCCAACGGCTCCG
CGGCGGCGACGGGGGAGGAAGGGGAGGTCGATATACAGAGGCGTTTGTGT
AACGCGGGAGGGCAAGTGGCGAGCGGTGATCTACAAAGAGCGCAAGCAGG
TGAGGAGGTTTTGCGGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig200794:346..615+

>mRNA_H-elongata_contig200794.5655.1 ID=mRNA_H-elongata_contig200794.5655.1|Name=mRNA_H-elongata_contig200794.5655.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig200794:346..615+ (Himanthalia elongata Himel1 dioecious)
GCTTCGTTAGCTTCGTCTGTACAGGTAGCTTCATCGAGGCCATCGAAGTC
AAGATCGATGGAGGGAGGAGGGGCAGCGGTGGGGGCGGTGGGGGTAGAGG
CGGCCGTGGCGGCGGACCATGATGATGTTTTGGAGGCCCCAACGGCTCCG
CGGCGGCGACGGGGGAGGAAGGGGAGGTCGATATACAGAGGCGTTTGTGT
AACGCGGGAGGGCAAGTGGCGAGCGGTGATCTACAAAGAGCGCAAGCAGG
TGAGGAGGTTTTGCGGTTGAGCTTCGTTAGCTTCGTCTGTACAGGTAGCT
TCATCGAGGCCATCGAAGTCAAGATCGATGGAGGGAGGAGGGGCAGCGGT
GGGGGCGGTGGGGGTAGAGGCGGCCGTGGCGGCGGACCATGATGATGTTT
TGGAGGCCCCAACGGCTCCGCGGCGGCGACGGGGGAGGAAGGGGAGGTCG
ATATACAGAGGCGTTTGTGTAACGCGGGAGGGCAAGTGGCGAGCGGTGAT
CTACAAAGAGCGCAAGCAGGTGAGGAGGTTTTGCGGTTGA
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