mRNA_H-elongata_contig200700.5652.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig200700.5652.1
Unique NamemRNA_H-elongata_contig200700.5652.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig200700.5652.1 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 6.190e-18
Identity = 95/293 (32.42%), Postives = 114/293 (38.91%), Query Frame = -2 
Query:   64 QWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQGPXXXXXXXXXXXXXAPSSRDVTAYKSNNPLQSQLQGH-HVAKSVPMTISTPALASARVQSISSSSXXXXXXXXXXXXXXXXXSPSGSGNIYGYYAYGSREPFHASATRVRGVSPSAAAXXXXXXXXATMTASDAVTAVATPVTFAPSATGWVTPAAAPSCSNSFSSAAAASIADGLYGDHNETVMAGINMSSRSQQQQNTSPTSGSEPSSSSFGLIGDELGEFGIDGSESGSPGSGFAPGGYWHQMVKEESMLARRSDDE 939
            QWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQG                            P++    G  +  +++ M +S  +L   R                         S SG G  YG               R RG +                 A+ A T++A                         S A A                                       +SSS GL+GDELGEFGIDG++S  PGSGFAPGGYWH+MVKEE+ +AR SDDE
Sbjct: 1107 QWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQGSPTITTTAPPATPQXXXXXXXXXXXXLKPIRRGRAGAANNNEAIDMKVSL-SLKGVR-------------------------SNSGGGAAYG-----------GPIPRPRGGN-----------MPVNNVAATATTSLA-------------------------SGAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXTSSSLGLMGDELGEFGIDGADSALPGSGFAPGGYWHRMVKEEARVARESDDE 1326
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BLAST of mRNA_H-elongata_contig200700.5652.1 vs. uniprot
Match: D7FJZ9_ECTSI (Putative c-myb-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ9_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.150e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = -2 
Query:  841 QWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQG 939
            QWAEICRQLHGRSYNDV+NRFNLIQRRNKRAQG
Sbjct:  369 QWAEICRQLHGRSYNDVQNRFNLIQRRNKRAQG 401
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BLAST of mRNA_H-elongata_contig200700.5652.1 vs. uniprot
Match: A0A836CND7_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.620e-7
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = -2 
Query:  847 QWAEICRQLHGRSYNDVKNRFNLIQRRNKRA 939
            QWAEICRQL GRSYNDVKNR+NLIQRR KRA
Sbjct:   92 QWAEICRQLPGRSYNDVKNRYNLIQRRLKRA 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200700.5652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JMK3_9PHAE6.190e-1832.42MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FJZ9_ECTSI2.150e-1096.97Putative c-myb-like transcription factor n=1 Tax=E... [more]
A0A836CND7_9STRA1.620e-790.32Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig200700contigH-elongata_contig200700:49..988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size941
Cds size621
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930129.669042-CDS-H-elongata_contig200700:48..6691622930129.669042-CDS-H-elongata_contig200700:48..669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200700 49..669 +
1691679292.4571748-CDS-H-elongata_contig200700:48..6691691679292.4571748-CDS-H-elongata_contig200700:48..669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200700 49..669 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930129.680621-UTR-H-elongata_contig200700:669..9881622930129.680621-UTR-H-elongata_contig200700:669..988Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig200700 670..988 +
1691679292.467584-UTR-H-elongata_contig200700:669..9881691679292.467584-UTR-H-elongata_contig200700:669..988Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig200700 670..988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig200700.5652.1prot_H-elongata_contig200700.5652.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig200700 49..669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig200700.5652.1

>prot_H-elongata_contig200700.5652.1 ID=prot_H-elongata_contig200700.5652.1|Name=mRNA_H-elongata_contig200700.5652.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
PHHPDVSFAASILPLNSDVFLFVIRPSCQHRLFLHHLVPVAPRSEPRAGA
AGLGAVDPEFPELVPDETERRRRRLAAARRRGVLLLLGARRHVNPRHHRF
VVVAVQAVSNRSGGRRREGVGTRRGGSGSHPPCRRWSKGNRRRYCCHSIR
RRHCCRYRCLRCCGCCGGGNTAYSGRRSMERFAAAIGVVAVYVAATTRRR
RVGRIR*
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mRNA from alignment at H-elongata_contig200700:49..988+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig200700.5652.1 ID=mRNA_H-elongata_contig200700.5652.1|Name=mRNA_H-elongata_contig200700.5652.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=940bp|location=Sequence derived from alignment at H-elongata_contig200700:49..988+ (Himanthalia elongata Himel1 dioecious)
CCCCATCATCCCGATGTCTCCTTCGCAGCATCCATTCTCCCTCTCAACTC
CGACGTTTTCCTCTTCGTCATCCGACCTTCGTGCCAGCATCGACTCTTCC
TTCACCATCTGGTGCCAGTAGCCCCCCGGAGCGAACCCCGAGCCGGGGCT
GCCGGACTCGGAGCCGTCGATCCCGAATTCCCCGAGCTCGTCCCCGATGA
GACCGAACGACGACGACGACGGCTCGCTGCCGCTCGTAGGCGAGGTGTTC
TGCTGCTGCTGGGAGCGCGACGACATGTTAATCCCCGCCATCACCGTTTC
GTTGTGGTCGCCGTACAGGCCGTCAGCAATAGAAGCGGCGGCCGCCGACG
AGAAGGAGTTGGAACAAGAAGGGGCGGCAGCGGGAGTCACCCACCCTGTC
GCAGATGGAGCAAAGGTAACAGGCGTCGCTACTGCTGTCACAGCATCCGA
CGCCGTCATTGTTGCCGTTACCGCTGCCTCCGCTGCTGCGGCTGCTGCGG
AGGGGGAAACACCGCGTACTCTGGTCGCCGAAGCATGGAACGGTTCGCGG
CTGCCATAGGCGTAGTAGCCGTATATGTTGCCGCTACCACTCGGAGAAGA
CGCGTAGGACGAATCCGATAGGCTGATCGACGCGGTGGAGCACGAAGGGG
AGGACGACGAAATAGACTGTACGCGGGCCGAGGCGAGGGCGGGCGTGGAA
ATTGTCATAGGAACGCTCTTCGCTACGTGGTGGCCCTGTAGCTGTGACTG
TAGTGGATTGTTGCTCTTGTACGCCGTGACGTCACGGGAAGACGGTGCGG
ATGACGTCGATGTCGAAGAAGGGGTCGCCGGGGACTGGGGCCCCTGGGCG
CGCTTGTTCCGTCGCTGGATAAGGTTGAACCTGTTCTTCACGTCATTGTA
GCTCCGCCCATGGAGTTGCCGGCAAATTTCAGCCCACTGG
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Coding sequence (CDS) from alignment at H-elongata_contig200700:49..988+

>mRNA_H-elongata_contig200700.5652.1 ID=mRNA_H-elongata_contig200700.5652.1|Name=mRNA_H-elongata_contig200700.5652.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig200700:49..988+ (Himanthalia elongata Himel1 dioecious)
CCCCATCATCCCGATGTCTCCTTCGCAGCATCCATTCTCCCTCTCAACTC
CGACGTTTTCCTCTTCGTCATCCGACCTTCGTGCCAGCATCGACTCTTCC
TTCACCATCTGGTGCCAGTAGCCCCCCGGAGCGAACCCCGAGCCGGGGCT
GCCGGACTCGGAGCCGTCGATCCCGAATTCCCCGAGCTCGTCCCCGATGA
GACCGAACGACGACGACGACGGCTCGCTGCCGCTCGTAGGCGAGGTGTTC
TGCTGCTGCTGGGAGCGCGACGACATGTTAATCCCCGCCATCACCGTTTC
GTTGTGGTCGCCGTACAGGCCGTCAGCAATAGAAGCGGCGGCCGCCGACG
AGAAGGAGTTGGAACAAGAAGGGGCGGCAGCGGGAGTCACCCACCCTGTC
GCAGATGGAGCAAAGGTAACAGGCGTCGCTACTGCTGTCACAGCATCCGA
CGCCGTCATTGTTGCCGTTACCGCTGCCTCCGCTGCTGCGGCTGCTGCGG
AGGGGGAAACACCGCGTACTCTGGTCGCCGAAGCATGGAACGGTTCGCGG
CTGCCATAGGCGTAGTAGCCGTATATGTTGCCGCTACCACTCGGAGAAGA
CGCGTAGGACGAATCCGATAGCCCCATCATCCCGATGTCTCCTTCGCAGC
ATCCATTCTCCCTCTCAACTCCGACGTTTTCCTCTTCGTCATCCGACCTT
CGTGCCAGCATCGACTCTTCCTTCACCATCTGGTGCCAGTAGCCCCCCGG
AGCGAACCCCGAGCCGGGGCTGCCGGACTCGGAGCCGTCGATCCCGAATT
CCCCGAGCTCGTCCCCGATGAGACCGAACGACGACGACGACGGCTCGCTG
CCGCTCGTAGGCGAGGTGTTCTGCTGCTGCTGGGAGCGCGACGACATGTT
AATCCCCGCCATCACCGTTTCGTTGTGGTCGCCGTACAGGCCGTCAGCAA
TAGAAGCGGCGGCCGCCGACGAGAAGGAGTTGGAACAAGAAGGGGCGGCA
GCGGGAGTCACCCACCCTGTCGCAGATGGAGCAAAGGTAACAGGCGTCGC
TACTGCTGTCACAGCATCCGACGCCGTCATTGTTGCCGTTACCGCTGCCT
CCGCTGCTGCGGCTGCTGCGGAGGGGGAAACACCGCGTACTCTGGTCGCC
GAAGCATGGAACGGTTCGCGGCTGCCATAGGCGTAGTAGCCGTATATGTT
GCCGCTACCACTCGGAGAAGACGCGTAGGACGAATCCGATAG
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