mRNA_H-elongata_contig200683.5651.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig200683.5651.1
Unique NamemRNA_H-elongata_contig200683.5651.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200683.5651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig200683contigH-elongata_contig200683:157..804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score70.5
Seed ortholog evalue9.5e-10
Seed eggNOG ortholog225117.XP_009350471.1
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37UIU@33090,3GY7W@35493,4JWFD@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size555
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930129.619502-CDS-H-elongata_contig200683:156..3581622930129.619502-CDS-H-elongata_contig200683:156..358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200683 157..358 +
1691679292.433784-CDS-H-elongata_contig200683:156..3581691679292.433784-CDS-H-elongata_contig200683:156..358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200683 157..358 +
1622930129.6316836-CDS-H-elongata_contig200683:451..8041622930129.6316836-CDS-H-elongata_contig200683:451..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200683 452..804 +
1691679292.4488504-CDS-H-elongata_contig200683:451..8041691679292.4488504-CDS-H-elongata_contig200683:451..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200683 452..804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig200683.5651.1prot_H-elongata_contig200683.5651.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig200683 157..804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig200683.5651.1

>prot_H-elongata_contig200683.5651.1 ID=prot_H-elongata_contig200683.5651.1|Name=mRNA_H-elongata_contig200683.5651.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp
NRLLRKQYNSKAMSASKGHITVNRKKGGDRRHHPKFNRKCFNCEKGEHYA
RDCRASEESGATDNRKGDCEEHGAEKGAMLAKLTVPEVPEVETIAAMVEA
TCGDRKEEWESDSGTTFHISHTRAGMSAYKKASPGMTVEIADGNTLPVDG
FGKIEMDVDQPGHTAKRVKMDHVAYVPGISRNLLS
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mRNA from alignment at H-elongata_contig200683:157..804+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig200683.5651.1 ID=mRNA_H-elongata_contig200683.5651.1|Name=mRNA_H-elongata_contig200683.5651.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=648bp|location=Sequence derived from alignment at H-elongata_contig200683:157..804+ (Himanthalia elongata Himel1 dioecious)
AACAGACTTCTCAGGAAACAATATAATTCGAAGGCTATGTCGGCATCGAA
GGGCCACATTACGGTGAATCGCAAAAAGGGGGGGGACAGAAGACACCACC
CCAAATTCAACCGAAAGTGTTTCAATTGCGAAAAGGGAGAACACTACGCT
CGGGACTGCAGGGCGAGTGAGGAATCAGGGGCCACCGACAACAGGAAGGG
CGGTAGCAGCTGCAAGTGTTACATTTGTGGGAGTGAGAAGCACCTTGTGC
ACAAGCACTGTGGGCTGTGCAAAAGCCTTGAGCACCGGACGCGAGACTGT
GAGGAGCACGGAGCTGAAAAGGGCGCAATGCTGGCAAAACTGACTGTGCC
GGAAGTCCCCGAGGTGGAGACGATAGCGGCAATGGTGGAAGCAACTTGTG
GCGATAGGAAGGAGGAATGGGAATCGGATTCAGGCACCACATTCCACATA
TCGCACACTCGGGCCGGAATGTCTGCGTACAAGAAAGCGTCGCCGGGGAT
GACCGTTGAGATCGCCGACGGGAACACTCTACCGGTGGACGGGTTCGGAA
AAATTGAGATGGATGTGGACCAACCGGGTCACACAGCTAAGAGGGTGAAG
ATGGACCATGTTGCGTATGTGCCAGGAATTTCGCGGAACCTGCTATCT
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Coding sequence (CDS) from alignment at H-elongata_contig200683:157..804+

>mRNA_H-elongata_contig200683.5651.1 ID=mRNA_H-elongata_contig200683.5651.1|Name=mRNA_H-elongata_contig200683.5651.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at H-elongata_contig200683:157..804+ (Himanthalia elongata Himel1 dioecious)
AACAGACTTCTCAGGAAACAATATAATTCGAAGGCTATGTCGGCATCGAA
GGGCCACATTACGGTGAATCGCAAAAAGGGGGGGGACAGAAGACACCACC
CCAAATTCAACCGAAAGTGTTTCAATTGCGAAAAGGGAGAACACTACGCT
CGGGACTGCAGGGCGAGTGAGGAATCAGGGGCCACCGACAACAGGAAGGG
CGAACAGACTTCTCAGGAAACAATATAATTCGAAGGCTATGTCGGCATCG
AAGGGCCACATTACGGTGAATCGCAAAAAGGGGGGGGACAGAAGACACCA
CCCCAAATTCAACCGAAAGTGTTTCAATTGCGAAAAGGGAGAACACTACG
CTCGGGACTGCAGGGCGAGTGAGGAATCAGGGGCCACCGACAACAGGAAG
GGCGACTGTGAGGAGCACGGAGCTGAAAAGGGCGCAATGCTGGCAAAACT
GACTGTGCCGGAAGTCCCCGAGGTGGAGACGATAGCGGCAATGGTGGAAG
CAACTTGTGGCGATAGGAAGGAGGAATGGGAATCGGATTCAGGCACCACA
TTCCACATATCGCACACTCGGGCCGGAATGTCTGCGTACAAGAAAGCGTC
GCCGGGGATGACCGTTGAGATCGCCGACGGGAACACTCTACCGGTGGACG
GGTTCGGAAAAATTGAGATGGATGTGGACCAACCGGGTCACACAGCTAAG
AGGGTGAAGATGGACCATGTTGCGTATGTGCCAGGAATTTCGCGGAACCT
GCTATCTACTGTGAGGAGCACGGAGCTGAAAAGGGCGCAATGCTGGCAAA
ACTGACTGTGCCGGAAGTCCCCGAGGTGGAGACGATAGCGGCAATGGTGG
AAGCAACTTGTGGCGATAGGAAGGAGGAATGGGAATCGGATTCAGGCACC
ACATTCCACATATCGCACACTCGGGCCGGAATGTCTGCGTACAAGAAAGC
GTCGCCGGGGATGACCGTTGAGATCGCCGACGGGAACACTCTACCGGTGG
ACGGGTTCGGAAAAATTGAGATGGATGTGGACCAACCGGGTCACACAGCT
AAGAGGGTGAAGATGGACCATGTTGCGTATGTGCCAGGAATTTCGCGGAA
CCTGCTATCT
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