mRNA_H-elongata_contig200638.5649.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig200638.5649.1
Unique NamemRNA_H-elongata_contig200638.5649.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200638.5649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig200638contigH-elongata_contig200638:4..533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size532
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930129.3055022-CDS-H-elongata_contig200638:3..3121622930129.3055022-CDS-H-elongata_contig200638:3..312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200638 4..312 +
1691679292.3914633-CDS-H-elongata_contig200638:3..3121691679292.3914633-CDS-H-elongata_contig200638:3..312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200638 4..312 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930129.3239162-UTR-H-elongata_contig200638:312..5331622930129.3239162-UTR-H-elongata_contig200638:312..533Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig200638 313..533 +
1691679292.401699-UTR-H-elongata_contig200638:312..5331691679292.401699-UTR-H-elongata_contig200638:312..533Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig200638 313..533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig200638.5649.1prot_H-elongata_contig200638.5649.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig200638 4..312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig200638.5649.1

>prot_H-elongata_contig200638.5649.1 ID=prot_H-elongata_contig200638.5649.1|Name=mRNA_H-elongata_contig200638.5649.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
FFLPCYHGLDFYSSLCGNSINQSKVLTKVGNLRYREGCGGFRAYHTPLCA
PRESRPLQQSKNWWGTGCNTNVPAFRRGGSKFVPLPGMQYSYPRLWRFTC
HI*
back to top

mRNA from alignment at H-elongata_contig200638:4..533+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig200638.5649.1 ID=mRNA_H-elongata_contig200638.5649.1|Name=mRNA_H-elongata_contig200638.5649.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=530bp|location=Sequence derived from alignment at H-elongata_contig200638:4..533+ (Himanthalia elongata Himel1 dioecious)
TTTTTTCTACCTTGTTACCACGGGCTGGATTTTTACAGCAGCTTATGTGG
GAATTCAATCAATCAGTCAAAGGTATTGACCAAAGTGGGAAATCTGAGAT
ATCGCGAGGGGTGTGGGGGGTTTCGTGCGTATCATACCCCCCTTTGCGCC
CCGCGAGAAAGCAGGCCTCTCCAGCAATCCAAAAATTGGTGGGGGACGGG
ATGTAACACAAACGTCCCCGCTTTTCGGAGGGGAGGATCCAAATTCGTCC
CCCTTCCGGGGATGCAATATTCGTATCCCCGGTTGTGGCGCTTTACATGT
CATATCTGAATACATACAAGAGGGGATGGATAAGTTTTGTCCCCAGGAGG
GGATATATTTCACGTGTCCCCTCTTCGAACCGGGGGCGTTCTAGTAAGTT
CACCCCTCCCCCCTATCGTTGGATGTCTTCAGACCCTGGTGGACCACAGG
AAGGTAGCAGTAGGAATAGTGGGCGGTCATTCGCGAGTGGGTCGAGTATC
GCCCCAAGCTTTCCATGCCAAGAGAGTGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig200638:4..533+

>mRNA_H-elongata_contig200638.5649.1 ID=mRNA_H-elongata_contig200638.5649.1|Name=mRNA_H-elongata_contig200638.5649.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig200638:4..533+ (Himanthalia elongata Himel1 dioecious)
TTTTTTCTACCTTGTTACCACGGGCTGGATTTTTACAGCAGCTTATGTGG
GAATTCAATCAATCAGTCAAAGGTATTGACCAAAGTGGGAAATCTGAGAT
ATCGCGAGGGGTGTGGGGGGTTTCGTGCGTATCATACCCCCCTTTGCGCC
CCGCGAGAAAGCAGGCCTCTCCAGCAATCCAAAAATTGGTGGGGGACGGG
ATGTAACACAAACGTCCCCGCTTTTCGGAGGGGAGGATCCAAATTCGTCC
CCCTTCCGGGGATGCAATATTCGTATCCCCGGTTGTGGCGCTTTACATGT
CATATCTGATTTTTTCTACCTTGTTACCACGGGCTGGATTTTTACAGCAG
CTTATGTGGGAATTCAATCAATCAGTCAAAGGTATTGACCAAAGTGGGAA
ATCTGAGATATCGCGAGGGGTGTGGGGGGTTTCGTGCGTATCATACCCCC
CTTTGCGCCCCGCGAGAAAGCAGGCCTCTCCAGCAATCCAAAAATTGGTG
GGGGACGGGATGTAACACAAACGTCCCCGCTTTTCGGAGGGGAGGATCCA
AATTCGTCCCCCTTCCGGGGATGCAATATTCGTATCCCCGGTTGTGGCGC
TTTACATGTCATATCTGA
back to top