mRNA_H-elongata_contig200538.5647.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5L012_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L012_9PHAE) HSP 1 Score: 124 bits (312), Expect = 6.480e-33 Identity = 65/141 (46.10%), Postives = 91/141 (64.54%), Query Frame = 1
Query: 10 KNLRKVREAAVLSSFWTF----VDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGLSVGLFK 420
K RK R A + TF V +LE + REGDQAGFY+HLK +++EGK+ +S IKDEDG +LRD IR+RWARWF +LNTKS ++ + + + +WP PL P+++E+ +A+R +AN K +GPD L L K
Sbjct: 25 KAARKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLREVEEAVREMANRKAVGPDDLPAELIK 165
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5K3I4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I4_9PHAE) HSP 1 Score: 122 bits (305), Expect = 5.790e-32 Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = 1
Query: 10 KNLRKVREAA---VLSSFWT-FVDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPD 396
K RK R +A L F+ +V +LE + REGDQAGFY+HLK +++EGK+ +S IKDEDG +LRD R+RWARWF +LNTKS ++ + T+ + QWP PL P++ E+ +A+R +AN K +GPD
Sbjct: 86 KAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPD 218
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5K0P7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P7_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.260e-31 Identity = 59/131 (45.04%), Postives = 86/131 (65.65%), Query Frame = 1
Query: 28 REAAVLSSFWTFVDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGLSVGLFK 420
R A+ + F +V +LE + REGDQA FY+HL +++EGK+ +S IKDEDG +LRD IR+RWARWF +LNTKS ++ + + + +WP PL P++ E+ +A+R +AN K +GPD L L K
Sbjct: 13 RWRALETFFGGYVRQLEKKSREGDQADFYRHLNMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 143
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 127 bits (320), Expect = 1.360e-31 Identity = 64/138 (46.38%), Postives = 93/138 (67.39%), Query Frame = 1
Query: 10 KNLRKVREAAVLSSFWT-FVDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGLSVGLFK 420
K RK R +A+ +F+ +V +LE + REGDQAGFY+HLK +++EGK+ +S IKDEDG +LRD IR+RWARWF +LNTKS ++ + + + +WP PL P++ E+ +A+R +AN K +GPD L L K
Sbjct: 444 KTARKKRSSALQETFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHEADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 581
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5KXZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ7_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.370e-31 Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 1
Query: 64 VDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGLSVGLFK 420
V +LE + REGDQAGFY+HL +++EGK+ +S IKDEDG +LRD IR+RWARWF +LNTKS ++ + + + +WP PL P++ E+ +A+R +AN K +GPD L L K
Sbjct: 24 VRQLEKKSREGDQAGFYRHLNMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 142
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5K397_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K397_9PHAE) HSP 1 Score: 119 bits (299), Expect = 2.890e-31 Identity = 62/133 (46.62%), Postives = 88/133 (66.17%), Query Frame = 1
Query: 10 KNLRKVREAA---VLSSFWT-FVDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPD 396
K RK R A L F+ +V +LE + REGDQAGFY+HLK +++EGK+ +S IKDEDG +LRD IR+RWARWF +LNTKS ++ + + + +WP PL P++ E+ +A+R +AN K +GPD
Sbjct: 61 KAARKKRSIARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPD 193
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5KJR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR4_9PHAE) HSP 1 Score: 120 bits (302), Expect = 2.970e-31 Identity = 63/140 (45.00%), Postives = 89/140 (63.57%), Query Frame = 1
Query: 10 KNLRKVREAA---VLSSFWT-FVDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGLSVGLF 417
K RK R A L F+ +V +LE + REGDQAGFY+HLK +++EGK+ +S KDEDG ++RD IR+RWARWF +LNTKS ++ + + + QWP PL P++ E+ +A+R +AN K +GPD L L
Sbjct: 3 KAARKKRSIARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNTKDEDGKVIRDPTFIRQRWARWFHXLLNTKSPTIDLHAADKVKQWPTYVPLDDIPSLPEVEEAVREMANRKAVGPDDLPAELI 142
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5L7I2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7I2_9PHAE) HSP 1 Score: 121 bits (304), Expect = 3.140e-31 Identity = 63/135 (46.67%), Postives = 88/135 (65.19%), Query Frame = 1
Query: 10 KNLRKVREAAVLSSFWTF----VDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGL 402
K RK R A + TF V +LE + REGDQAGFY+HLK +++EGK+ +S IKDEDG +LRD IR+RWARWF +LNTKS ++ + + + +WP PL P++ E+ +A+R +AN K +GPD L
Sbjct: 3 KAARKKRSIARWRALGTFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDL 137
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5JL84_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL84_9PHAE) HSP 1 Score: 121 bits (303), Expect = 3.290e-31 Identity = 63/141 (44.68%), Postives = 89/141 (63.12%), Query Frame = 1
Query: 10 KNLRKVREAAVLSSFWTFVD----KLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGLSVGLFK 420
K RK R A + TF + +LE + REGDQAGFY+HLK +++EGK+ + IKDEDG +LRD IR+RWARWF +LNTKS ++ + + + +WP PL P++ E+ +A+R +AN K +GPD L L K
Sbjct: 61 KAARKKRSIASWRALETFFEGYLWQLEKQSREGDQAGFYRHLKMIDVEGKRSFTPQNIKDEDGKVLRDLVFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAIGPDDLPAELIK 201
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5KZD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD3_9PHAE) HSP 1 Score: 124 bits (312), Expect = 3.560e-31 Identity = 65/141 (46.10%), Postives = 90/141 (63.83%), Query Frame = 1
Query: 10 KNLRKVREAAVLSSFWTF----VDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGLSVGLFK 420
K RK R A + TF V +LE + REGDQAGFY+HLK +++EGK+ +S IKDEDG +LRD IR+RWARWF +LNTKS ++ + + + +WP PL P++ E+ +A+R + N KT+GPD L L K
Sbjct: 268 KAARKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDHIPSLLEVEEAVREMVNSKTVGPDDLPAELIK 408 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig200538.5647.1 >prot_H-elongata_contig200538.5647.1 ID=prot_H-elongata_contig200538.5647.1|Name=mRNA_H-elongata_contig200538.5647.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp MTGKNLRKVREAAVLSSFWTFVDKLETRVREGDQAGFYKHLKTMNLEGKQback to top mRNA from alignment at H-elongata_contig200538:691..1110+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig200538.5647.1 ID=mRNA_H-elongata_contig200538.5647.1|Name=mRNA_H-elongata_contig200538.5647.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig200538:691..1110+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig200538:691..1110+ >mRNA_H-elongata_contig200538.5647.1 ID=mRNA_H-elongata_contig200538.5647.1|Name=mRNA_H-elongata_contig200538.5647.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig200538:691..1110+ (Himanthalia elongata Himel1 dioecious)back to top |