mRNA_H-elongata_contig200538.5647.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig200538.5647.1
Unique NamemRNA_H-elongata_contig200538.5647.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5L012_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L012_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 6.480e-33
Identity = 65/141 (46.10%), Postives = 91/141 (64.54%), Query Frame = 1
Query:   10 KNLRKVREAAVLSSFWTF----VDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGLSVGLFK 420
            K  RK R  A   +  TF    V +LE + REGDQAGFY+HLK +++EGK+  +S  IKDEDG +LRD   IR+RWARWF  +LNTKS  ++ +  + + +WP   PL   P+++E+ +A+R +AN K +GPD L   L K
Sbjct:   25 KAARKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLREVEEAVREMANRKAVGPDDLPAELIK 165          
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5K3I4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I4_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 5.790e-32
Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = 1
Query:   10 KNLRKVREAA---VLSSFWT-FVDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPD 396
            K  RK R +A    L  F+  +V +LE + REGDQAGFY+HLK +++EGK+  +S  IKDEDG +LRD    R+RWARWF  +LNTKS  ++ + T+ + QWP   PL   P++ E+ +A+R +AN K +GPD
Sbjct:   86 KAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPD 218          
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5K0P7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P7_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.260e-31
Identity = 59/131 (45.04%), Postives = 86/131 (65.65%), Query Frame = 1
Query:   28 REAAVLSSFWTFVDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGLSVGLFK 420
            R  A+ + F  +V +LE + REGDQA FY+HL  +++EGK+  +S  IKDEDG +LRD   IR+RWARWF  +LNTKS  ++ +  + + +WP   PL   P++ E+ +A+R +AN K +GPD L   L K
Sbjct:   13 RWRALETFFGGYVRQLEKKSREGDQADFYRHLNMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 143          
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.360e-31
Identity = 64/138 (46.38%), Postives = 93/138 (67.39%), Query Frame = 1
Query:   10 KNLRKVREAAVLSSFWT-FVDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGLSVGLFK 420
            K  RK R +A+  +F+  +V +LE + REGDQAGFY+HLK +++EGK+  +S  IKDEDG +LRD   IR+RWARWF  +LNTKS  ++ +  + + +WP   PL   P++ E+ +A+R +AN K +GPD L   L K
Sbjct:  444 KTARKKRSSALQETFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHEADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 581          
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5KXZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ7_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.370e-31
Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 1
Query:   64 VDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGLSVGLFK 420
            V +LE + REGDQAGFY+HL  +++EGK+  +S  IKDEDG +LRD   IR+RWARWF  +LNTKS  ++ +  + + +WP   PL   P++ E+ +A+R +AN K +GPD L   L K
Sbjct:   24 VRQLEKKSREGDQAGFYRHLNMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 142          
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5K397_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K397_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.890e-31
Identity = 62/133 (46.62%), Postives = 88/133 (66.17%), Query Frame = 1
Query:   10 KNLRKVREAA---VLSSFWT-FVDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPD 396
            K  RK R  A    L  F+  +V +LE + REGDQAGFY+HLK +++EGK+  +S  IKDEDG +LRD   IR+RWARWF  +LNTKS  ++ +  + + +WP   PL   P++ E+ +A+R +AN K +GPD
Sbjct:   61 KAARKKRSIARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPD 193          
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5KJR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR4_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.970e-31
Identity = 63/140 (45.00%), Postives = 89/140 (63.57%), Query Frame = 1
Query:   10 KNLRKVREAA---VLSSFWT-FVDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGLSVGLF 417
            K  RK R  A    L  F+  +V +LE + REGDQAGFY+HLK +++EGK+  +S   KDEDG ++RD   IR+RWARWF  +LNTKS  ++ +  + + QWP   PL   P++ E+ +A+R +AN K +GPD L   L 
Sbjct:    3 KAARKKRSIARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNTKDEDGKVIRDPTFIRQRWARWFHXLLNTKSPTIDLHAADKVKQWPTYVPLDDIPSLPEVEEAVREMANRKAVGPDDLPAELI 142          
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5L7I2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7I2_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 3.140e-31
Identity = 63/135 (46.67%), Postives = 88/135 (65.19%), Query Frame = 1
Query:   10 KNLRKVREAAVLSSFWTF----VDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGL 402
            K  RK R  A   +  TF    V +LE + REGDQAGFY+HLK +++EGK+  +S  IKDEDG +LRD   IR+RWARWF  +LNTKS  ++ +  + + +WP   PL   P++ E+ +A+R +AN K +GPD L
Sbjct:    3 KAARKKRSIARWRALGTFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDL 137          
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5JL84_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL84_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.290e-31
Identity = 63/141 (44.68%), Postives = 89/141 (63.12%), Query Frame = 1
Query:   10 KNLRKVREAAVLSSFWTFVD----KLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGLSVGLFK 420
            K  RK R  A   +  TF +    +LE + REGDQAGFY+HLK +++EGK+  +   IKDEDG +LRD   IR+RWARWF  +LNTKS  ++ +  + + +WP   PL   P++ E+ +A+R +AN K +GPD L   L K
Sbjct:   61 KAARKKRSIASWRALETFFEGYLWQLEKQSREGDQAGFYRHLKMIDVEGKRSFTPQNIKDEDGKVLRDLVFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAIGPDDLPAELIK 201          
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Match: A0A6H5KZD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD3_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.560e-31
Identity = 65/141 (46.10%), Postives = 90/141 (63.83%), Query Frame = 1
Query:   10 KNLRKVREAAVLSSFWTF----VDKLETRVREGDQAGFYKHLKTMNLEGKQDRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQWPANTPLGIQPTMQELTDAIRSLANGKTLGPDGLSVGLFK 420
            K  RK R  A   +  TF    V +LE + REGDQAGFY+HLK +++EGK+  +S  IKDEDG +LRD   IR+RWARWF  +LNTKS  ++ +  + + +WP   PL   P++ E+ +A+R + N KT+GPD L   L K
Sbjct:  268 KAARKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDHIPSLLEVEEAVREMVNSKTVGPDDLPAELIK 408          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200538.5647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L012_9PHAE6.480e-3346.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3I4_9PHAE5.790e-3247.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K0P7_9PHAE1.260e-3145.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMB4_9PHAE1.360e-3146.38Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KXZ7_9PHAE1.370e-3147.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K397_9PHAE2.890e-3146.62Uncharacterized protein (Fragment) n=3 Tax=Ectocar... [more]
A0A6H5KJR4_9PHAE2.970e-3145.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7I2_9PHAE3.140e-3146.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JL84_9PHAE3.290e-3144.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KZD3_9PHAE3.560e-3146.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig200538contigH-elongata_contig200538:691..1110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.6
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog13735.ENSPSIP00000001074
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3AUHC@33154,3C3TH@33208,3DJCK@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size420
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930128.9908836-CDS-H-elongata_contig200538:690..11101622930128.9908836-CDS-H-elongata_contig200538:690..1110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200538 691..1110 +
1691679292.2534182-CDS-H-elongata_contig200538:690..11101691679292.2534182-CDS-H-elongata_contig200538:690..1110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200538 691..1110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig200538.5647.1prot_H-elongata_contig200538.5647.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig200538 691..1110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig200538.5647.1

>prot_H-elongata_contig200538.5647.1 ID=prot_H-elongata_contig200538.5647.1|Name=mRNA_H-elongata_contig200538.5647.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
MTGKNLRKVREAAVLSSFWTFVDKLETRVREGDQAGFYKHLKTMNLEGKQ
DRSSTYIKDEDGILLRDAERIRERWARWFQTILNTKSSALESNITEGLDQ
WPANTPLGIQPTMQELTDAIRSLANGKTLGPDGLSVGLFK
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mRNA from alignment at H-elongata_contig200538:691..1110+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig200538.5647.1 ID=mRNA_H-elongata_contig200538.5647.1|Name=mRNA_H-elongata_contig200538.5647.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig200538:691..1110+ (Himanthalia elongata Himel1 dioecious)
ATGACTGGAAAAAATCTTCGGAAGGTTCGGGAGGCTGCCGTGCTGAGTTC TTTCTGGACTTTCGTCGACAAACTTGAAACACGCGTTCGAGAAGGCGACC AGGCCGGATTCTACAAGCATCTGAAGACGATGAATTTGGAAGGGAAGCAA GACCGCAGCTCAACGTACATCAAAGACGAAGACGGCATACTCCTGAGGGA CGCTGAACGTATCCGCGAACGATGGGCCCGCTGGTTCCAAACCATCCTGA ACACCAAATCGTCGGCGCTCGAGTCGAACATCACTGAAGGCCTCGACCAG TGGCCGGCGAACACGCCGCTGGGAATTCAGCCCACGATGCAGGAGTTGAC AGACGCCATCCGCTCGTTAGCGAACGGAAAGACTCTTGGACCGGACGGAT TATCGGTTGGACTGTTCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig200538:691..1110+

>mRNA_H-elongata_contig200538.5647.1 ID=mRNA_H-elongata_contig200538.5647.1|Name=mRNA_H-elongata_contig200538.5647.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig200538:691..1110+ (Himanthalia elongata Himel1 dioecious)
ATGACTGGAAAAAATCTTCGGAAGGTTCGGGAGGCTGCCGTGCTGAGTTC
TTTCTGGACTTTCGTCGACAAACTTGAAACACGCGTTCGAGAAGGCGACC
AGGCCGGATTCTACAAGCATCTGAAGACGATGAATTTGGAAGGGAAGCAA
GACCGCAGCTCAACGTACATCAAAGACGAAGACGGCATACTCCTGAGGGA
CGCTGAACGTATCCGCGAACGATGGGCCCGCTGGTTCCAAACCATCCTGA
ACACCAAATCGTCGGCGCTCGAGTCGAACATCACTGAAGGCCTCGACCAG
TGGCCGGCGAACACGCCGCTGGGAATTCAGCCCACGATGCAGGAGTTGAC
AGACGCCATCCGCTCGTTAGCGAACGGAAAGACTCTTGGACCGGACGGAT
TATCGGTTGGACTGTTCAAGATGACTGGAAAAAATCTTCGGAAGGTTCGG
GAGGCTGCCGTGCTGAGTTCTTTCTGGACTTTCGTCGACAAACTTGAAAC
ACGCGTTCGAGAAGGCGACCAGGCCGGATTCTACAAGCATCTGAAGACGA
TGAATTTGGAAGGGAAGCAAGACCGCAGCTCAACGTACATCAAAGACGAA
GACGGCATACTCCTGAGGGACGCTGAACGTATCCGCGAACGATGGGCCCG
CTGGTTCCAAACCATCCTGAACACCAAATCGTCGGCGCTCGAGTCGAACA
TCACTGAAGGCCTCGACCAGTGGCCGGCGAACACGCCGCTGGGAATTCAG
CCCACGATGCAGGAGTTGACAGACGCCATCCGCTCGTTAGCGAACGGAAA
GACTCTTGGACCGGACGGATTATCGGTTGGACTGTTCAAG
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