mRNA_H-elongata_contig20042.5644.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20042.5644.1
Unique NamemRNA_H-elongata_contig20042.5644.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig20042.5644.1 vs. uniprot
Match: D7G648_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G648_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 6.400e-80
Identity = 135/206 (65.53%), Postives = 159/206 (77.18%), Query Frame = 1 
Query:    1 LQGPNGVVHKLKDRLRMICKQRRIRLREFFRQFDFHHTKKVSKEQFHRALDQAGLTLSTTGGPPSNLLTVKEVDVLIKRYGIKMD---GCSDEICVNYGKLCEQIEKVFTLRELEKNPTLNVKLSLEGRPESEYGTRHPRLSAEEAGVVARLLSRVRIFVTTEGLIVNRLFETFDKSHNGKVTTSIFLRQLDSMFKSKLSRAEARQ 609
            ++G +G+V  LKD+LR +CKQRRIRL+EFF+ +D HH KKVSK QF RALDQAGLT    G PPS+LLTV+EV+VL+KRY +K D   G   E  VNY KLCEQ+EKVFT R LEKNPTL+VKLSLE RP S YG   P LS +EA  VA LL RVR+F  TEGLIV  LFETFDK H+G+VT+ IFLRQLDSMFK +LS+ EAR+
Sbjct:   17 MKGHDGMVRPLKDKLRTLCKQRRIRLQEFFKPYDVHHNKKVSKGQFRRALDQAGLTAPARGAPPSDLLTVQEVEVLVKRYEVKGDARAGAIGEGVVNYWKLCEQVEKVFTRRGLEKNPTLDVKLSLEDRPGSGYGVHRPGLSTQEADQVATLLGRVRLFSATEGLIVKSLFETFDKRHSGRVTSPIFLRQLDSMFKGRLSKEEARR 222
[Close]
BLAST of mRNA_H-elongata_contig20042.5644.1 vs. uniprot
Match: K3W5D1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5D1_GLOUD)

HSP 1 Score: 119 bits (297), Expect = 5.260e-25
Identity = 83/242 (34.30%), Postives = 130/242 (53.72%), Query Frame = 1 
Query:   31 LKDRLRMICKQRRIRLREFFRQFDFHHTKKVSKEQFHRALDQAGLTLSTTGGPPSNLLTVKEVDVLIKRYGIKMDGCSDEICVNYGKLCEQIEKVFTLRELEKNPTLNVKLSLEGRPESEYGTRHPRLSAEEAGVVARLLSRVRIFVTTEGLIVNRLFETFDKSHNGKVTTSIFLRQL-DSMFKSKLSRAEARQRDIKDNALSLLLRAYQTWDGTVNYRAMHAD-CSHNIGVEATTTPSLAP 750
            LK ++R++CKQRRIRL EF + FD HH KK+  EQF RALD +GL LS T           EV++L+ +Y        + + V+Y + C+ I+KVFT++ LE NP L  ++  E     ++G     LS  E  ++  + +++   VT +G+++  +F  FD+S+ GKVT   F+R L D ++ +K               + +LL+AY   +  V+YRA+H D C    G   T     +P
Sbjct:   10 LKAKIRVLCKQRRIRLEEFMKTFDVHHVKKIKAEQFKRALDVSGLHLSPT-----------EVNLLLAKYRFP----DEPLFVDYRRFCDLIDKVFTVKGLEGNPELKTRIQNEMPSLKKFGA--VSLSENELELLKLVKAKLFAAVTNKGIVLKDVFHDFDRSNAGKVTKPQFVRDLLDIVYLTK-------------EEMDVLLKAYGD-ELDVHYRALHFDICPGAAGAGTTVAAPRSP 220
[Close]
BLAST of mRNA_H-elongata_contig20042.5644.1 vs. uniprot
Match: A0A8K1CS62_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS62_PYTOL)

HSP 1 Score: 113 bits (283), Expect = 3.220e-23
Identity = 76/229 (33.19%), Postives = 124/229 (54.15%), Query Frame = 1 
Query:   31 LKDRLRMICKQRRIRLREFFRQFDFHHTKKVSKEQFHRALDQAGLTLSTTGGPPSNLLTVKEVDVLIKRYGIKMDGCSDEICVNYGKLCEQIEKVFTLRELEKNPTLNVKLSLEGRPESEYGTRHPRLSAEEAGVVARLLSRVRIFVTTEGLIVNRLFETFDKSHNGKVTTSIFLRQLDSMFKSKLSRAEARQRDIKDNALSLLLRAYQTWDGTVNYRAMHADCSHNIG 717
            LK ++R++CKQRRIRL EF + FD HH KK+  EQF RALD +GL L           T +E+++++ +Y +K     + + V+Y + C+ I+K FT++ LE  P L + +  E   + ++      LS  E  V+ +  +++   V  +G+++  +F  FD+S+ GKVT S F+R L  +     +  EA            L++AY   +  VNYR +H D + N G
Sbjct:   10 LKAKIRVLCKQRRIRLEEFMKTFDIHHVKKIKVEQFKRALDVSGLQL-----------TSEEMNLIVAKYRLK----DEPLFVDYRRFCDLIDKAFTVKGLEGKPDLCLSIHNELPAQKKFAI--VPLSDMEEQVLTQAKAKLATAVRNKGIVLKDVFHGFDRSNAGKVTKSQFVRDLLDIVVLSSAEVEA------------LVKAYGN-ELDVNYRVLHYDIAPNSG 208
[Close]
BLAST of mRNA_H-elongata_contig20042.5644.1 vs. uniprot
Match: A0A421EYM9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EYM9_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.860e-22
Identity = 75/223 (33.63%), Postives = 120/223 (53.81%), Query Frame = 1 
Query:   31 LKDRLRMICKQRRIRLREFFRQFDFHHTKKVSKEQFHRALDQAGLTLSTTGGPPSNLLTVKEVDVLIKRYGIKMDGCSDEICVNYGKLCEQIEKVFTLRELEKNPTLNVKLSLEGRPESEYGTRHPRLSAEEAGVVARLLSRVRIFVTTEGLIVNRLFETFDKSHNGKVTTSIFLRQLDSMFKSKLSRAEARQRDIKDNALSLLLRAYQTWDGTVNYRAMHAD 699
            LK ++R++CKQRRIRL EF + FD H  KK+  EQF RALD +GL LS+T           E+ +L+ +Y +      D   V+Y + C+ ++KVFT++ LE  PTL      +  P  +     P   AEE G++  +  ++   V  +G+++  +F  FD+S+ GKVT   F+R +  +              + D+ +++LL+AY      V+YRA+H D
Sbjct:   10 LKAKIRILCKQRRIRLEEFMKTFDIHRVKKIKTEQFKRALDMSGLQLSST-----------EIGLLLTKYRL----VDDPAFVDYRRFCDLMDKVFTVKGLEAKPTLQSNFQSDF-PALKTFAFEPLTGAEE-GLLRVVKQKLFAAVMNKGIVLKDVFHDFDRSNVGKVTRPQFVRDISDIVV------------LSDDEINILLKAYGD-KLDVHYRALHFD 202
[Close]
BLAST of mRNA_H-elongata_contig20042.5644.1 vs. uniprot
Match: A0A421GXK5_9STRA (Rad21_Rec8_N domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GXK5_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.230e-22
Identity = 75/223 (33.63%), Postives = 120/223 (53.81%), Query Frame = 1 
Query:   31 LKDRLRMICKQRRIRLREFFRQFDFHHTKKVSKEQFHRALDQAGLTLSTTGGPPSNLLTVKEVDVLIKRYGIKMDGCSDEICVNYGKLCEQIEKVFTLRELEKNPTLNVKLSLEGRPESEYGTRHPRLSAEEAGVVARLLSRVRIFVTTEGLIVNRLFETFDKSHNGKVTTSIFLRQLDSMFKSKLSRAEARQRDIKDNALSLLLRAYQTWDGTVNYRAMHAD 699
            LK ++R++CKQRRIRL EF + FD H  KK+  EQF RALD +GL LS+T           E+ +L+ +Y +      D   V+Y + C+ ++KVFT++ LE  PTL      +  P  +     P   AEE G++  +  ++   V  +G+++  +F  FD+S+ GKVT   F+R +  +              + D+ +++LL+AY      V+YRA+H D
Sbjct:  562 LKAKIRILCKQRRIRLEEFMKTFDIHRVKKIKTEQFKRALDMSGLQLSST-----------EIGLLLTKYRL----VDDPAFVDYRRFCDLMDKVFTVKGLEAKPTLQSNFQSDF-PALKTFAFEPLTGAEE-GLLRVVKQKLFAAVMNKGIVLKDVFHDFDRSNVGKVTRPQFVRDISDIVV------------LSDDEINILLKAYGD-KLDVHYRALHFD 754
[Close]
BLAST of mRNA_H-elongata_contig20042.5644.1 vs. uniprot
Match: D0NDK7_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NDK7_PHYIT)

HSP 1 Score: 110 bits (274), Expect = 4.480e-22
Identity = 75/223 (33.63%), Postives = 119/223 (53.36%), Query Frame = 1 
Query:   31 LKDRLRMICKQRRIRLREFFRQFDFHHTKKVSKEQFHRALDQAGLTLSTTGGPPSNLLTVKEVDVLIKRYGIKMDGCSDEICVNYGKLCEQIEKVFTLRELEKNPTLNVKLSLEGRPESEYGTRHPRLSAEEAGVVARLLSRVRIFVTTEGLIVNRLFETFDKSHNGKVTTSIFLRQLDSMFKSKLSRAEARQRDIKDNALSLLLRAYQTWDGTVNYRAMHAD 699
            LK ++R++CKQRRIRL EF + FD H  KK+  EQF RALD +GL LSTT           E+++L+ +Y I      D   V+YG+ C+ ++KVFT++ LE   T  V +S +  P   +      L+  E   +A +  ++   V  +G+++  +F  FD+S+ GKVT   F+R +  +              +  + + +LL+AY      V+YRA+H D
Sbjct:   10 LKAKIRVLCKQRRIRLEEFMKTFDTHRVKKIRTEQFKRALDVSGLHLSTT-----------EMNLLLAKYRI----AEDPSFVDYGRFCDLMDKVFTVKGLEAKRTWQVGVSTDFEPLKTFA--FETLTPAEDKTLAVVKQKLLAAVMHKGIVLKDVFHDFDRSNAGKVTRPQFVRDISDIVV------------LSSDEMDVLLKAYGD-KLDVHYRALHFD 202
[Close]
BLAST of mRNA_H-elongata_contig20042.5644.1 vs. uniprot
Match: A0A5D6XFG6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFG6_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.280e-22
Identity = 82/240 (34.17%), Postives = 123/240 (51.25%), Query Frame = 1 
Query:   40 RLRMICKQRRIRLREFFRQFDFHHTKKVSKEQFHRALDQAGLTLSTTGGPPSNLLTVKEVDVLIKRYGIKMDGCSDEICVNYGKLCEQIEKVFTLRELEKNPTLNVKLSLEGRPESEYGTRHPRLSAEEAGVVARLLSRVRIFVTTEGLIVNRLFETFDKSHNGKVTTSIFLRQ-LDSMFKSKLSRAEARQRDIKDNALSLLLRAY-QTWDGTVNYRAMHAD-CSHNIGVEATTTPSLAP 750
            ++R++CKQRR+RL EF + FD H  KK+  EQF RALD  GL LS             EV +L+ +Y +     +D   V+Y + C+ I+KVFT++ LE  P L+ K      P   +G     LS  E  ++A + +++   V T+G+++  +F  FD+S+ GKVT   F+R  LD +F             +  + L +LL AY    D  V+YRA+H D C    G  A      +P
Sbjct:  594 KIRVLCKQRRLRLEEFMKTFDVHRVKKIRAEQFTRALDGTGLCLSGD-----------EVQLLLAKYRLP----ADPAFVDYRRFCDLIDKVFTVKGLEGRPELHAKQRPVAAPPV-FGPGPTALSERERALLAAVKAKLLAAVMTKGVVLKDVFRDFDRSNAGKVTRPQFVRDVLDILF-------------LAQDELDVLLAAYGDALD--VHYRALHYDICPGAAGAGAVAAAPQSP 802
[Close]
BLAST of mRNA_H-elongata_contig20042.5644.1 vs. uniprot
Match: A0A6A3MKF8_9STRA (EF-hand domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MKF8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.460e-21
Identity = 76/223 (34.08%), Postives = 123/223 (55.16%), Query Frame = 1 
Query:   31 LKDRLRMICKQRRIRLREFFRQFDFHHTKKVSKEQFHRALDQAGLTLSTTGGPPSNLLTVKEVDVLIKRYGIKMDGCSDEICVNYGKLCEQIEKVFTLRELEKNPTLNVKLSLEGRPESEYGTRHPRLSAEEAGVVARLLSRVRIFVTTEGLIVNRLFETFDKSHNGKVTTSIFLRQLDSMFKSKLSRAEARQRDIKDNALSLLLRAYQTWDGTVNYRAMHAD 699
            LK ++R++CKQRRIRL EF + FD H  KK+  EQF RALD +GL LSTT           EV++++ +Y +      D   V+Y + C+ ++KVFT++ LE  P      S+   PE+++    P   ++EA ++  +  ++   V  +G+++  +F  FD+S+ GKVT   F+R +  +  + LS  E          + +LL+AY      V+YRA+H D
Sbjct:   10 LKAKIRVLCKQRRIRLEEFMKTFDVHRVKKIKTEQFKRALDVSGLHLSTT-----------EVNLIVVKYRLP----DDPSFVDYRRFCDLMDKVFTVKGLEAKPAHQS--SIHSVPEAKFFAFEPLTPSDEA-LLRVVKQKLFAAVMNKGIVLKDVFHDFDRSNAGKVTRPQFVRDISDI--AVLSSDE----------MDVLLKAYSD-KLDVHYRALHFD 201
[Close]
BLAST of mRNA_H-elongata_contig20042.5644.1 vs. uniprot
Match: A0A0W8DKX0_PHYNI (Katanin p60 ATPase-containing subunit A 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DKX0_PHYNI)

HSP 1 Score: 107 bits (267), Expect = 2.680e-21
Identity = 75/223 (33.63%), Postives = 115/223 (51.57%), Query Frame = 1 
Query:   31 LKDRLRMICKQRRIRLREFFRQFDFHHTKKVSKEQFHRALDQAGLTLSTTGGPPSNLLTVKEVDVLIKRYGIKMDGCSDEICVNYGKLCEQIEKVFTLRELEKNPTLNVKLSLEGRPESEYGTRHPRLSAEEAGVVARLLSRVRIFVTTEGLIVNRLFETFDKSHNGKVTTSIFLRQLDSMFKSKLSRAEARQRDIKDNALSLLLRAYQTWDGTVNYRAMHAD 699
            LK ++RM+CKQRRIRL EF + FD H  KK+  EQF RALD +GL LS T           E+ +L+ +Y I  D C     V+Y + C+ ++KVFT++ LE  P        +  P   +    P    EEA  +A +  ++   V  +G+++  +F  FD+S+ GKVT   F+R +  +              +  + + +LL+AY      V+YRA+H D
Sbjct:   10 LKAKIRMLCKQRRIRLEEFMKTFDIHRVKKIKTEQFKRALDVSGLHLSAT-----------EISLLLAKYRIADDPCF----VDYRRFCDLMDKVFTVKGLEAKPKFQSIPHGDFEPLKTFAF-EPLTPTEEA-TLAVVKQKLLAAVMNKGIVLKDVFHDFDRSNAGKVTRPQFVRDISDIVV------------LSSDEMDVLLKAYGD-KLDVHYRALHFD 202
[Close]
BLAST of mRNA_H-elongata_contig20042.5644.1 vs. uniprot
Match: A0A225X305_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X305_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.030e-21
Identity = 78/232 (33.62%), Postives = 119/232 (51.29%), Query Frame = 1 
Query:   31 LKDRLRMICKQRRIRLREFFRQFDFHHTKKVSKEQFHRALDQAGLTLSTTGGPPSNLLTVKEVDVLIKRYGIKMDGCSDEICVNYGKLCEQIEKVFTLRELEKNPTLNVKLSLEGRPESEYGTRHPRLSAEEAGVVARLLSRVRIFVTTEGLIVNRLFETFDKSHNGKVTTSIFLRQ------LDSMFKSKLSRAEARQRDIKDNALSLLLRAYQTWDGTVNYRAMHADCSH 708
            LK ++R++CKQRRIRL EF + FD H  KK+  EQF RALD +GL LS+            EV++L+ +Y I     +D   V+Y + C+ ++KVFT++ LE NP+L   +  + +P   +    P   AEE  + A +  ++   V  +G+++  +F  FD+S+ GKVT   F+R       L S    +L R       +KD+ L  L           N R    +CSH
Sbjct:   10 LKAKIRVLCKQRRIRLEEFMKTFDIHRVKKIKAEQFRRALDVSGLHLSSA-----------EVNLLVTKYRI----ANDPSFVDYRRFCDLMDKVFTVKGLEANPSLQKGIHKDLQPLKTFAF-EPLTPAEEDTLTA-VKKKLLAAVMNKGIVLKDVFHDFDRSNAGKVTRPQFVRDISDIAVLSSNEMDELERMLHNLDHLKDDILQCLKEQAMEVQSK-NLRQSFQNCSH 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20042.5644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G648_ECTSI6.400e-8065.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3W5D1_GLOUD5.260e-2534.30Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CS62_PYTOL3.220e-2333.19Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A421EYM9_9STRA1.860e-2233.63Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A421GXK5_9STRA2.230e-2233.63Rad21_Rec8_N domain-containing protein n=3 Tax=Phy... [more]
D0NDK7_PHYIT4.480e-2233.63Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A5D6XFG6_9STRA7.280e-2234.17Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6A3MKF8_9STRA1.460e-2134.08EF-hand domain-containing protein n=12 Tax=Phytoph... [more]
A0A0W8DKX0_PHYNI2.680e-2133.63Katanin p60 ATPase-containing subunit A 1 n=1 Tax=... [more]
A0A225X305_9STRA4.030e-2133.62Uncharacterized protein n=1 Tax=Phytophthora megak... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20042contigH-elongata_contig20042:2488..6449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue2.9e-25
Seed eggNOG ortholog65071.PYU1_T000172
EggNOG free text desc.EF-hand, calcium binding motif
EggNOG OGs1MK7Q@121069,28JGH@1,2QRVM@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons8
Model size1314
Cds size1314
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20042.5644.1prot_H-elongata_contig20042.5644.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20042 2488..6449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930128.486666-CDS-H-elongata_contig20042:2487..26071622930128.486666-CDS-H-elongata_contig20042:2487..2607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 2488..2607 +
1691679291.9964736-CDS-H-elongata_contig20042:2487..26071691679291.9964736-CDS-H-elongata_contig20042:2487..2607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 2488..2607 +
1622930128.5046878-CDS-H-elongata_contig20042:2840..30321622930128.5046878-CDS-H-elongata_contig20042:2840..3032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 2841..3032 +
1691679292.007668-CDS-H-elongata_contig20042:2840..30321691679292.007668-CDS-H-elongata_contig20042:2840..3032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 2841..3032 +
1622930128.523797-CDS-H-elongata_contig20042:3191..33741622930128.523797-CDS-H-elongata_contig20042:3191..3374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 3192..3374 +
1691679292.019869-CDS-H-elongata_contig20042:3191..33741691679292.019869-CDS-H-elongata_contig20042:3191..3374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 3192..3374 +
1622930128.5386453-CDS-H-elongata_contig20042:3678..38181622930128.5386453-CDS-H-elongata_contig20042:3678..3818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 3679..3818 +
1691679292.0349174-CDS-H-elongata_contig20042:3678..38181691679292.0349174-CDS-H-elongata_contig20042:3678..3818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 3679..3818 +
1622930128.551043-CDS-H-elongata_contig20042:4816..50201622930128.551043-CDS-H-elongata_contig20042:4816..5020Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 4817..5020 +
1691679292.0446517-CDS-H-elongata_contig20042:4816..50201691679292.0446517-CDS-H-elongata_contig20042:4816..5020Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 4817..5020 +
1622930128.567979-CDS-H-elongata_contig20042:5321..55711622930128.567979-CDS-H-elongata_contig20042:5321..5571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 5322..5571 +
1691679292.0556521-CDS-H-elongata_contig20042:5321..55711691679292.0556521-CDS-H-elongata_contig20042:5321..5571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 5322..5571 +
1622930128.583074-CDS-H-elongata_contig20042:5949..61231622930128.583074-CDS-H-elongata_contig20042:5949..6123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 5950..6123 +
1691679292.0658274-CDS-H-elongata_contig20042:5949..61231691679292.0658274-CDS-H-elongata_contig20042:5949..6123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 5950..6123 +
1622930128.5940802-CDS-H-elongata_contig20042:6398..64491622930128.5940802-CDS-H-elongata_contig20042:6398..6449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 6399..6449 +
1691679292.0828807-CDS-H-elongata_contig20042:6398..64491691679292.0828807-CDS-H-elongata_contig20042:6398..6449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20042 6399..6449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20042.5644.1

>prot_H-elongata_contig20042.5644.1 ID=prot_H-elongata_contig20042.5644.1|Name=mRNA_H-elongata_contig20042.5644.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=438bp
LQGPNGVVHKLKDRLRMICKQRRIRLREFFRQFDFHHTKKVSKEQFHRAL
DQAGLTLSTTGGPPSNLLTVKEVDVLIKRYGIKMDGCSDEICVNYGKLCE
QIEKVFTLRELEKNPTLNVKLSLEGRPESEYGTRHPRLSAEEAGVVARLL
SRVRIFVTTEGLIVNRLFETFDKSHNGKVTTSIFLRQLDSMFKSKLSRAE
ARQRDIKDNALSLLLRAYQTWDGTVNYRAMHADCSHNIGVEATTTPSLAP
TVAENELPRRKKESSIYPVVSTLRCVRSVRHLYSVTDLPPSSHRAEHRLS
RGADEDDRGTDSIVSSLAGFSPNSAKMLSFGEDYPWEKDNNTTKAAVAPG
DCWLPIERKMASKVVYHCLWPEDAYIPYDHNHSGTVTEEVFRRGLPSTFR
VPFSETQIDALVEKYRSEKGRVNFRKMCEHVCVIAHNT
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mRNA from alignment at H-elongata_contig20042:2488..6449+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20042.5644.1 ID=mRNA_H-elongata_contig20042.5644.1|Name=mRNA_H-elongata_contig20042.5644.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3962bp|location=Sequence derived from alignment at H-elongata_contig20042:2488..6449+ (Himanthalia elongata Himel1 dioecious)
CTTCAGGGGCCCAATGGTGTGGTGCACAAACTCAAGGACCGACTGCGCAT
GATATGCAAGCAGCGGCGAATTCGCCTGAGGGAATTCTTCAGACAGTTCG
ATTTTCATCATACCAAAAAGGTGCGACAAAGCGTTCAGAGTTGCGCCTCC
AGCAATACTTCAGCTAGACAAAATGTAAAGGACATAACCAAATAGGCGTG
GGATGAAAATGATATATTGTTCTAGCAAAGTTTGCTGTATCTTGTAGATG
GTAAGAACCAGTCAAAGCAAAACATGGGATCACAAACGCTTTGTTGCTAC
TGCAATGCCCTTCTCCTCTCCTGAATGAGAAATACAACACATGCTTGGAA
CAGGTCTCGAAGGAACAGTTCCACCGCGCGCTCGACCAAGCCGGACTTAC
GCTTTCGACCACGGGCGGGCCTCCCTCCAATCTCCTCACCGTCAAGGAGG
TAGATGTGCTAATTAAGCGCTACGGCATTAAAATGGACGGTTGCAGCGAT
GAGATCTGCGTGAACTACGGGAAGCTGTGCGAACAGATCGAGAAGGTGTG
CTGGCAGGCTTTGCGGACGTACTTTTTCGCATTTCACGTAGCATTATGCT
TGGTCCGATTTAGAAGTACCAAGACTTAAGTGAAGCCAGAACGACGAGAT
CACGACTGCTTCATGTAATTTTTCCTCTTAATCTTGCACTCATCATCATG
CCAGGTATTTACCCTCCGAGAGCTCGAGAAAAATCCTACTCTGAATGTCA
AGCTCTCTCTCGAAGGCCGTCCGGAGTCTGAGTACGGCACCCGCCACCCA
AGGCTTTCCGCAGAAGAGGCGGGTGTCGTCGCGAGATTGTTGTCCCGGGT
CAGGATTTTCGTCACCACAGAAGGACTCATCGTGAATGTGCGTTGCATTG
ACTGATTAGCGGGTCATCCGGAAGTCCGAGTTGTACAGAGTACACGTTTT
CAATGGTACTATAGTTTTCGCGATCGTAGAAGATATTATCATTAGAGAGA
GTGGTGCTCGAAGATAAATCTAGACAACGAAAGAGAAAGAGATAAGCGGT
TCATACCAGGCCATATAATATTGTATGACTCTTCTGTGGAATGAGAGAAT
AATGCGCCCCTCGATCACTTTACACCCTTTGCGCACATCTCATGCTGTTT
TGATTACCACCTTGGTCGTATGGGTTAATGGGAGGATACAGAGGTTATTC
GAAACGTTCGACAAGAGCCACAATGGGAAGGTCACCACTTCTATATTTCT
ACGGCAGCTGGACTCTATGTTTAAGAGCAAGCTGTCGAGGGCGGAAGCTA
GGCAAAGGGACATTAAGGATAATGCCTTATCGTCGTTTTAACTGTGTGTC
TTCTACATGACAAAAGTGTGCATAGCTTAGGTAGCTTAAATTTAGAGCTC
TCATTTTTCTCGCACGAGCTTCTCTCAATGTCATCACTTTTGTTTGTCCT
CGAGCTTTCTATTAGAATAAAAATACATCAAGTCGAGTCGAAGCACTATC
GGCAGAACTATCATAAAGCCAGATTATATGAACAAATAGGAACTATACGA
CGCCGCACTATTGACTTGGAATGTAAGCGTGCGTTTCTGTGAGTGTACGC
AAATGGTAGCCCAGCTTCCATTCTTGGATTGGACACCATATTTTATAATA
GTGCGCTGCTCGTACTCAGAACCATTGAGATACATTTCGTTCGGTCCAAT
TTAGTATAATACTTGCTCATTTTTCCTTACTTTTTGGGGTGTATCTCCAC
AACAATCACTAGTAGGTCGGGCCCACCTGTGTTGATGCTGGAAAACCGGT
AGTCGTGGCTAAGCGGAGGGTGGTGTCTACTTTCAGACGAGTCTTTGATT
TCATCTCACGATGGCAGATGCCCGTAAGGACTTAATGTTTCGTAATTTTC
CTCAAGTTTCCTTTTCTGGCGGGTCGGGTTTTGGAACAGGTTCGAGAGTC
ATTCATATCTACTCGCTCGTCGCATATATAAATATAACATAAAAGCTTTG
AGCTCGATGACGGAACCGAGGTGTAGCCTTGAATGCGGTGCATGGTGCGC
ATTGTTTTACAGTTTTTTCTTAAGACTGACACCCCTGGACTTCTAGGTGT
TGCTTTCAAGGTCTTGGAGAGCTTAGCTCGTTTGGGAGGCAAGAGAGAGA
AAGAAGTGACGGAAAGGGGAGAAGCCTCTGGGCGTCTTGACCTGGACATC
CAACCAGCTTCTTAGGGATTTCTCGGTGTCTGGCGTTATTTCTTATTATA
CGGTTGGGTTGCGGTTACATGCACGTTTAACCTAAGAACTTGCCTGTTAC
ACGCCCTTTGCTATCATGCCTAAGCACAGGTTGCTTCTGCGAGCATACCA
GACGTGGGACGGCACCGTGAACTACCGAGCGATGCATGCCGACTGCAGCC
ATAATATTGGTGTTGAGGCTACAACTACACCGTCGCTAGCTCCGACAGTT
GCGGAGAACGAGCTACCAAGGCGGAAGAAAGAAAGTTCCATATACCCAGT
GGTATCCACCCTCAGGTGTGTCCGTAGTGTGCGGTGCTCAGTCCAGAAAA
TACACAACGTTTATATGGAGTGGAGGAAAACATGTGGAGTTCCACGCGAG
ATCTTTGTGTATATCATTTTTTGCAACTGTTTCAATGCCATAGTTCGGTG
TCACCTCGATCGACCGTTCGACGAGCAACACTCCTAGCACGGGCGCATTT
TCTCCTCATATCACGCCCCTGTTCATACAAGAGACTGCTTTAAACAATTT
TACTTCTACGTAGAACAACGCACGACTAAAAGTAGAAGTGGGACCATATT
TATAATTGCCCTGCTTCCAGCTCATATTTTCGAGCCACCTCTATTCCGTC
ACTGATCTACCCCCATCCTCACACAGAGCTGAGCACAGACTATCCCGTGG
CGCCGATGAGGATGACCGCGGCACCGACTCTATCGTCAGCTCTCTCGCGG
GGTTCTCCCCTAATAGCGCGAAGATGCTAAGTTTTGGTGAAGACTACCCT
TGGGAGAAGGATAATAATACGACAAAGGCAGCAGTGGCGCCGGGGGACTG
TTGGCTTCCAATCGAGCGCAAGATGGCTTCCAAGGTAAACGTATCAGCAT
GACACGCCATCAATCCGGTACATTTCCGCGGGTATGTAGGGGATGAAATA
TCCTTTGATGTACCTTCGCCCCAGTAATTGATGTAGGTTATCGAGTACCT
CTCGGAACATTTCGAACACAACAAACCCGAACCCAGCCCTAACTCGAGCA
TATTTCTGCTCGTTAGGCGGTGTTGTGTTTTTATGGAGCGGGTCTAGTTA
ATCGATTCGCCTAACTCATCAACAGAACGTGATATCTTTGGCCCTTCTGA
GACAAGGTATGGGACATATGGAGCCAGGGCTTGGCCTTCGAGATCAACAC
GCTCCTTATCTATAAAACAATGTCCAAGAATTCCCACGGTTGTATATATT
CCTATATGACAGGTAGTATACCATTGCCTTTGGCCCGAGGATGCATACAT
TCCCTACGATCACAATCACTCGGGTACGGTAACAGAGGAAGTATTTCGGC
GAGGACTTCCGAGCACATTCCGTGTTCCCTTCAGCGAGACCCAGATTGAT
GCTCTCGTGGAGAAGTACCGGAGCGAGAAGGGTCGGGTGAGGGACACGTA
GGTGTCAACCCACTCGTTGTGTTTCGCTCCTGCTGCTCTCCAAGTCTTCT
CGAAGGAAAAGCGCGAGACTATTTTCCCTGTCTCCGGAGTTTGTAACTCT
TTATGTGCCGCTTGTTCTTAGTGGCTACTGTCACTTAGGATGGATTCGAG
AGGAATCGTCCGAGTATGCCGCACCACTGTTAGCGATCCTCAGCCAAAAT
ATTGATCGGTGAATCAAATACCTAGTCCACGCTCAACCGCGCCCCATTCC
TTCTCCCTTAGGTGAACTTCCGAAAAATGTGCGAACATGTTTGTGTCATT
GCACATAACACA
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Coding sequence (CDS) from alignment at H-elongata_contig20042:2488..6449+

>mRNA_H-elongata_contig20042.5644.1 ID=mRNA_H-elongata_contig20042.5644.1|Name=mRNA_H-elongata_contig20042.5644.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2628bp|location=Sequence derived from alignment at H-elongata_contig20042:2488..6449+ (Himanthalia elongata Himel1 dioecious)
CTTCAGGGGCCCAATGGTGTGGTGCACAAACTCAAGGACCGACTGCGCAT
GATATGCAAGCAGCGGCGAATTCGCCTGAGGGAATTCTTCAGACAGTTCG
ATTTTCATCATACCAAAAAGCTTCAGGGGCCCAATGGTGTGGTGCACAAA
CTCAAGGACCGACTGCGCATGATATGCAAGCAGCGGCGAATTCGCCTGAG
GGAATTCTTCAGACAGTTCGATTTTCATCATACCAAAAAGGTCTCGAAGG
AACAGTTCCACCGCGCGCTCGACCAAGCCGGACTTACGCTTTCGACCACG
GGCGGGCCTCCCTCCAATCTCCTCACCGTCAAGGAGGTAGATGTGCTAAT
TAAGCGCTACGGCATTAAAATGGACGGTTGCAGCGATGAGATCTGCGTGA
ACTACGGGAAGCTGTGCGAACAGATCGAGAAGGTCTCGAAGGAACAGTTC
CACCGCGCGCTCGACCAAGCCGGACTTACGCTTTCGACCACGGGCGGGCC
TCCCTCCAATCTCCTCACCGTCAAGGAGGTAGATGTGCTAATTAAGCGCT
ACGGCATTAAAATGGACGGTTGCAGCGATGAGATCTGCGTGAACTACGGG
AAGCTGTGCGAACAGATCGAGAAGGTATTTACCCTCCGAGAGCTCGAGAA
AAATCCTACTCTGAATGTCAAGCTCTCTCTCGAAGGCCGTCCGGAGTCTG
AGTACGGCACCCGCCACCCAAGGCTTTCCGCAGAAGAGGCGGGTGTCGTC
GCGAGATTGTTGTCCCGGGTCAGGATTTTCGTCACCACAGAAGGACTCAT
CGTGAATGTATTTACCCTCCGAGAGCTCGAGAAAAATCCTACTCTGAATG
TCAAGCTCTCTCTCGAAGGCCGTCCGGAGTCTGAGTACGGCACCCGCCAC
CCAAGGCTTTCCGCAGAAGAGGCGGGTGTCGTCGCGAGATTGTTGTCCCG
GGTCAGGATTTTCGTCACCACAGAAGGACTCATCGTGAATAGGTTATTCG
AAACGTTCGACAAGAGCCACAATGGGAAGGTCACCACTTCTATATTTCTA
CGGCAGCTGGACTCTATGTTTAAGAGCAAGCTGTCGAGGGCGGAAGCTAG
GCAAAGGGACATTAAGGATAATGCCTTATCAGGTTATTCGAAACGTTCGA
CAAGAGCCACAATGGGAAGGTCACCACTTCTATATTTCTACGGCAGCTGG
ACTCTATGTTTAAGAGCAAGCTGTCGAGGGCGGAAGCTAGGCAAAGGGAC
ATTAAGGATAATGCCTTATCGTTGCTTCTGCGAGCATACCAGACGTGGGA
CGGCACCGTGAACTACCGAGCGATGCATGCCGACTGCAGCCATAATATTG
GTGTTGAGGCTACAACTACACCGTCGCTAGCTCCGACAGTTGCGGAGAAC
GAGCTACCAAGGCGGAAGAAAGAAAGTTCCATATACCCAGTGGTATCCAC
CCTCAGGTGTGTCCGTAGTGTGCGGTTGCTTCTGCGAGCATACCAGACGT
GGGACGGCACCGTGAACTACCGAGCGATGCATGCCGACTGCAGCCATAAT
ATTGGTGTTGAGGCTACAACTACACCGTCGCTAGCTCCGACAGTTGCGGA
GAACGAGCTACCAAGGCGGAAGAAAGAAAGTTCCATATACCCAGTGGTAT
CCACCCTCAGGTGTGTCCGTAGTGTGCGCCACCTCTATTCCGTCACTGAT
CTACCCCCATCCTCACACAGAGCTGAGCACAGACTATCCCGTGGCGCCGA
TGAGGATGACCGCGGCACCGACTCTATCGTCAGCTCTCTCGCGGGGTTCT
CCCCTAATAGCGCGAAGATGCTAAGTTTTGGTGAAGACTACCCTTGGGAG
AAGGATAATAATACGACAAAGGCAGCAGTGGCGCCGGGGGACTGTTGGCT
TCCAATCGAGCGCAAGATGGCTTCCAAGCCACCTCTATTCCGTCACTGAT
CTACCCCCATCCTCACACAGAGCTGAGCACAGACTATCCCGTGGCGCCGA
TGAGGATGACCGCGGCACCGACTCTATCGTCAGCTCTCTCGCGGGGTTCT
CCCCTAATAGCGCGAAGATGCTAAGTTTTGGTGAAGACTACCCTTGGGAG
AAGGATAATAATACGACAAAGGCAGCAGTGGCGCCGGGGGACTGTTGGCT
TCCAATCGAGCGCAAGATGGCTTCCAAGGTAGTATACCATTGCCTTTGGC
CCGAGGATGCATACATTCCCTACGATCACAATCACTCGGGTACGGTAACA
GAGGAAGTATTTCGGCGAGGACTTCCGAGCACATTCCGTGTTCCCTTCAG
CGAGACCCAGATTGATGCTCTCGTGGAGAAGTACCGGAGCGAGAAGGGTC
GGGTAGTATACCATTGCCTTTGGCCCGAGGATGCATACATTCCCTACGAT
CACAATCACTCGGGTACGGTAACAGAGGAAGTATTTCGGCGAGGACTTCC
GAGCACATTCCGTGTTCCCTTCAGCGAGACCCAGATTGATGCTCTCGTGG
AGAAGTACCGGAGCGAGAAGGGTCGGGTGAACTTCCGAAAAATGTGCGAA
CATGTTTGTGTCATTGCACATAACACAGTGAACTTCCGAAAAATGTGCGA
ACATGTTTGTGTCATTGCACATAACACA
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