mRNA_H-elongata_contig20019.5636.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20019.5636.1
Unique NamemRNA_H-elongata_contig20019.5636.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: D8LEJ0_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ0_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 5.090e-100
Identity = 173/296 (58.45%), Postives = 207/296 (69.93%), Query Frame = 1
Query:   28 HSQCPLQGSPFVRGGAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHAL-ALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQLGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAVDA-PGG---------GSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFNDWKRSGGGGSESGSGSKGVRRTWAEICAAGHHAVG 882
            H+ CPL  SPF R   VP +M +LNIWLM+PSV+FD V ++THSVILTSGTLSPLHSL AELGRSF +RLLP    ALEA HVI+   Q+RVIPVG SP N TL        + +     ++EF+ ++GRT+  L +H+P+GVLVFL SY  L+R   IWR  EVW  LERIKGVIVEEPE+ A+FKAA++RYE AVD  PGG         GSA+LLAVYRGKMSEG+SFND YARGVLCVGIP+ N G PK+ AK  +NDWK  G        G  G RR+W ++CAAG H  G
Sbjct:  216 HASCPLGNSPFSRSSYVPAKMCRLNIWLMSPSVVFDEVPAQTHSVILTSGTLSPLHSLRAELGRSFGERLLPFPQQALEANHVINPERQLRVIPVGHSPRNKTL--------MCKKVCTDNDEFVEEIGRTVVALAKHIPAGVLVFLSSYKLLQRAVAIWRKCEVWADLERIKGVIVEEPEAAADFKAAKRRYEDAVDGGPGGRGRGRGSAGGSAILLAVYRGKMSEGISFNDHYARGVLCVGIPYPNLGDPKIVAKKCYNDWKSLGRKPEAKDRGEAG-RRSWPDVCAAGDHNYG 502          
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 1.410e-67
Identity = 130/227 (57.27%), Postives = 155/227 (68.28%), Query Frame = 1
Query:   28 HSQCPLQGSPFVRGGAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHAL-ALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQLGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAVDAPGGGSA----------LLLAVYRGKMSE 675
            H+ CPL  SPF R   VP +M +LNIWLM+PSV+FD V ++THSVILTSGTLSPLHSL AELGRSF +RLLP    ALEA HVI+   Q+RVIPVG SP N TL          +      +EF+ ++GRT+  L +H+P+GVLVFL SY  L+R   IWR  EVW  LER KGVIVEEPE+ A+FKAA++RYE AVD   GG            +LLAVYRGKMSE
Sbjct:  545 HASCPLGNSPFSRSSYVPAKMCRLNIWLMSPSVVFDEVPAQTHSVILTSGTLSPLHSLRAELGRSFGERLLPFPQQALEANHVINPGRQLRVIPVGHSPDNKTLT--------CKKVNTDDDEFVEEIGRTVVALAKHIPAGVLVFLSSYKLLQRAVAIWRKCEVWADLERSKGVIVEEPEAAADFKAAKRRYEEAVDGGPGGRXXXXXXXXXXXVLLAVYRGKMSE 763          
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A0L0DAS5_THETB (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DAS5_THETB)

HSP 1 Score: 167 bits (424), Expect = 4.080e-43
Identity = 103/256 (40.23%), Postives = 143/256 (55.86%), Query Frame = 1
Query:   49 GSPFVRGGAVPKRMF-------KLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHALALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQLGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAVDA-----PGGGSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFND 780
            GS   +GG+ P R          LN W M P ++F+ +A E+ SVILTSGTLSPL S E+EL       + P  + LEA HVID   QV V P+ ++P  YTL       N          EF  QLG T+  L   VP G+LVF+ SY+ L ++   W+ + ++ +L ++K V V+EP + A+F+    ++  A+       P  G A+LLAVYRGK+SEG+ F+D  AR VLCVGIP+ N    K+  K  +ND
Sbjct:  996 GSSGNQGGSGPSRSAGETGFETSLNFWCMNPGIVFNSLAGESRSVILTSGTLSPLDSFESEL-------MAPFPIVLEAGHVIDMEKQVFVTPLVQAPSGYTLNSTWKHSNTL--------EFQDQLGETVKALAHIVPHGMLVFVTSYTLLDKLVKRWKETGLYAQLSQLKRV-VQEPRAKADFEGTMAKFYAAIKGSKASPPTIGGAVLLAVYRGKVSEGIDFSDDNARSVLCVGIPYPNIKDRKITIKRRYND 1235          
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A8J4F1I0_9CHLO (Helicase ATP-binding domain-containing protein n=3 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F1I0_9CHLO)

HSP 1 Score: 165 bits (418), Expect = 2.610e-42
Identity = 103/244 (42.21%), Postives = 134/244 (54.92%), Query Frame = 1
Query:   55 PFVRGGAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHALALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQ--LGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAVDAPGGGSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFND 780
            P+ RG   P     L +W   P+V F  +A + HSVILTSGTLSPL S  +ELG  F  RL       EA HV+D + QV    + R PG          G+L  ++ R S  F  Q   G  + R CQ +P GVL+F+PSY  L ++ T W+++ +W RLE  K V+VE  E+G  F+ A   Y TAV    GG  L +AV RGK SEG+ F D +ARGV+ +GIPF      KV  K  +ND
Sbjct:  360 PWGRG---PSAAVSLGLWCFNPAVAFRNLADKAHSVILTSGTLSPLDSFASELGTEFHIRL-------EAPHVVDMSRQVWASVIPRGPG----------GSLLSATYRESGRFDFQDDAGEAVLRYCQVIPGGVLLFMPSYGLLEKLMTRWKSTGLWARLEAAKTVVVEPREAGKGFEDAMATYYTAVRTGKGG--LFMAVCRGKASEGIDFADDHARGVILLGIPFPAIKDTKVKLKKEYND 581          
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A8J4GC57_9CHLO (Helicase ATP-binding domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GC57_9CHLO)

HSP 1 Score: 162 bits (410), Expect = 3.100e-41
Identity = 103/247 (41.70%), Postives = 134/247 (54.25%), Query Frame = 1
Query:   46 QGSPFVRGGAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHALALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQ--LGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAVDAPGGGSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFND 780
            Q  P+ RG   P     L +W   P+V+F  +A + HSVILTSGTLSPL S  +ELG  F  RL       EA HV+D + QV    V R PG          G+L  ++ R S  F  Q   G  + R CQ +P GVL+F+PSYS L ++   W+++ +  RLE  K V+VE  E+G  F+ A   Y  AV    GG  L +AV RGK SEG+ F D +ARGV+ +GIPF      KV  K  +ND
Sbjct:  588 QDEPWARG---PSAAVSLGLWCFNPAVVFRNLADKAHSVILTSGTLSPLDSFASELGTEFHIRL-------EAPHVVDMSRQVWAGVVPRGPG----------GSLLSATYRESGRFAFQDDAGEAVLRYCQVIPGGVLLFMPSYSLLEKLMARWKSTGLMSRLEAAKTVVVEPREAGKGFEDAMATYYAAVRNGKGG--LFMAVCRGKASEGIDFADHHARGVILLGIPFPAIKDTKVKLKKDYND 812          
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A8J2NNP6_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2NNP6_9HEXA)

HSP 1 Score: 152 bits (384), Expect = 7.460e-38
Identity = 93/249 (37.35%), Postives = 128/249 (51.41%), Query Frame = 1
Query:   64 RGGAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHALALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQ--LGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAVDAPGGGS--ALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFNDWKRSGG 798
            R G   K +  +NIW + P+V F  +    HS++LTSGTLSP+ S ++EL         P  + LEA HVID  NQV    +G  P N  L            S R    F  Q  LG+ + R+CQ +P G+L F PSY  L +V   WR++ +W +L  +K V++E     A+F+ A   +      P      A+ LAV RGK+SEG+ F D  AR V+C+GIPF N    +V  K  +N   RS G
Sbjct:  525 RSGVTTKEILSINIWCLNPAVAFQELKDTVHSIVLTSGTLSPMQSFQSELD-------CPFPIKLEASHVID-RNQVFAGVLGMGPNNIKLN----------GSFRNVETFQYQDELGQLVLRVCQAMPHGILCFFPSYRLLEKVSERWRSTGLWHQLSSVKQVLIEPRSGSADFELAISTFYDCNATPLATQTGAMFLAVCRGKVSEGIDFADNNARAVICIGIPFPNFKDLQVELKREYNQANRSRG 755          
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A812SWT3_9DINO (Rtel1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812SWT3_9DINO)

HSP 1 Score: 151 bits (381), Expect = 1.950e-37
Identity = 99/239 (41.42%), Postives = 129/239 (53.97%), Query Frame = 1
Query:   97 LNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRS--FSKRLLPHALALEAKHVIDTNNQVR-VIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQLGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWR-------ASEVWRRLERIKGVIVEEPES-GAEFKAARQRYETAVDAPGGGSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFND 780
            L+ WLM P V+F+  A   H+V+L SGTL+PL SL+AEL  S   S R LP    LEA HV+ +   +  V+P     GN  L     +G   Q     + EFL +LG  + +L   +P GVL FLPSY TL      W+          +WRR+E +KG +V EP S G E   A   +  +V +  G  AL LAVYRGKMSEG+ F D   R V+C+GIP+     P V AK  +ND
Sbjct:  557 LSAWLMTPGVLFEIFAGSAHAVLLASGTLTPLSSLQAELADSPTLSSRALPEG-PLEALHVVSSKQMLAAVLPCS---GNLRL-----VGTYDQWH---TQEFLEELGNCVLQLILSIPGGVLCFLPSYQTLELATAAWKRRGGASGGGSLWRRMEEVKGALVSEPRSAGKEMSDACATFINSVRS--GHGALALAVYRGKMSEGLDFTDDLCRAVICIGIPYPQVNDPVVLAKRQWND 781          
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A8J5XN14_DIALT (Helicase ATP-binding domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XN14_DIALT)

HSP 1 Score: 150 bits (378), Expect = 5.650e-37
Identity = 102/272 (37.50%), Postives = 152/272 (55.88%), Query Frame = 1
Query:   70 GAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHALALEAKHVIDTNNQV-RVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQLGRTIARLCQHVPS--GVLVFLPSYSTLRRVGTIW--RASE----------------VWRRLERIKGVIVEEPES-GAEFKAARQRYETAVDAPGGGSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFNDWKRSGGGGSESGS 819
            GA+ +   +L +WL++PSVIF  +A+  H+++LTSGTLSPL ++E ELG +F+ R+ P    ++A+H +     + RV+ V  +    T        NLA+       E   +LG T+ARL +  P+  GVLVF+ S+S+ R++  +W  RA+                 VW  L+  KGV++ E    GA+     + +  AVD   G  AL +AVYRGK+SEG+SFND YAR V+CVG+PF +    ++ AK  FND   S   G  SG+
Sbjct: 1070 GAIAEWGVELCVWLLSPSVIFSALATAAHALVLTSGTLSPLGAMEKELGPAFAARVHPTIRPVQAEHAVGAEQLLARVVSVSAAGCPLTCNAE----NLARP------EVCLELGITLARLARATPTRAGVLVFVSSFSSARKLSAMWQDRAAHADHWQRAWNAAWPGLTVWAELQATKGVVMVEAHGPGADATEDVRAFRAAVD--DGRGALCIAVYRGKLSEGISFNDDYARLVVCVGVPFPSVADEQLKAKRAFNDLPSSRAEGLLSGA 1329          
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A3F2RKI7_9STRA (Helicase ATP-binding domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RKI7_9STRA)

HSP 1 Score: 149 bits (377), Expect = 6.750e-37
Identity = 95/260 (36.54%), Postives = 137/260 (52.69%), Query Frame = 1
Query:   52 SPFVRGGAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHALALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQLGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAVDA---------------PGGGSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFNDWK 786
            SP  R G   +   K+ IW +  +V F  +A+E  SVILTSGTLSP+ S   ELG +F  RL       EA HV++   QV +  + R PGN  L+   S  N  Q       ++   +G+ + +  Q +P G+L+F PSYS L ++ T W+ +++W  +E+ K V  E   +G +F A  + Y+  + A               P    A+ LAVYRGK+SEG+ F+D  AR VLCVGIPF N    +V+ K  + D K
Sbjct:  605 SPTKRNGN--EWQLKMCIWCLNAAVAFSDIANEARSVILTSGTLSPMDSFAGELGVNFPIRL-------EANHVVNMRKQVFIGSIMRGPGNVDLQ---STYNNQQDP-----KYQDSMGQVLLQYSQSIPGGILMFFPSYSLLNKLSTRWKQTKLWGEIEQFKTVYTEPRNAGKDFDALLEDYKDTIVAYSSTLPSGMGTTNGQPEKTGAIFLAVYRGKVSEGIDFSDDNARAVLCVGIPFPNVKDLQVSLKRKYQDQK 847          
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: UPI001E674C93 (Fanconi anemia group J protein homolog n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E674C93)

HSP 1 Score: 149 bits (377), Expect = 7.070e-37
Identity = 91/252 (36.11%), Postives = 139/252 (55.16%), Query Frame = 1
Query:   49 GSPFVRGGAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHALALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSN--EFLRQLGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAV------DAPGGGSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFND 780
            G  F RG +  + ++ +N W + P V F+ V S T S+ILTSGTLSP++S ++EL        +P  + LEA HV+D  NQV V  VGR P +  L          Q++ R +   EF  +LGR +  +C+ VP G+L FLPSY+ L ++   W+ + +W  L  +K V++ EP +  +F+ A   +   +      +  G   A  +AV RGK+SEG+ F D  AR V+ VGIP+ N    +V+ K  +N+
Sbjct:  375 GGWFGRGKSTVEWVYSINFWCLNPGVAFNSVGSSTRSIILTSGTLSPMNSFQSELS-------VPFKIQLEANHVVD-KNQVWVGTVGRGPTDQLL----------QATYRHTETWEFQDELGRLVLAVCKAVPRGILCFLPSYAMLNKLVDRWQVTGIWNELNEVK-VVITEPRNNEQFEEAITLFYDTIKNTGTENCEGINGAFFMAVCRGKVSEGLDFTDDNARAVIAVGIPYPNVKDIQVDLKRQYNN 607          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ0_ECTSI5.090e-10058.45Helicase ATP-binding domain-containing protein n=1... [more]
A0A6H5JZN2_9PHAE1.410e-6757.27Helicase ATP-binding domain-containing protein n=1... [more]
A0A0L0DAS5_THETB4.080e-4340.232-methoxy-6-polyprenyl-1,4-benzoquinol methylase, ... [more]
A0A8J4F1I0_9CHLO2.610e-4242.21Helicase ATP-binding domain-containing protein n=3... [more]
A0A8J4GC57_9CHLO3.100e-4141.70Helicase ATP-binding domain-containing protein n=2... [more]
A0A8J2NNP6_9HEXA7.460e-3837.35Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A812SWT3_9DINO1.950e-3741.42Rtel1 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A8J5XN14_DIALT5.650e-3737.50Helicase ATP-binding domain-containing protein n=1... [more]
A0A3F2RKI7_9STRA6.750e-3736.54Helicase ATP-binding domain-containing protein n=4... [more]
UPI001E674C937.070e-3736.11Fanconi anemia group J protein homolog n=1 Tax=Pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20019contigH-elongata_contig20019:2531..5763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score326.2
Seed ortholog evalue1.5e-86
Seed eggNOG ortholog2880.D8LEJ0
KEGG koko:K11136,ko:K15362
KEGG Pathwayko03440,ko03460,map03440,map03460
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1132@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEAD2
Ec32 orthologEc-21_004480.4
Exons6
Model size882
Cds size882
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20019.5636.1prot_H-elongata_contig20019.5636.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20019 2531..5763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930127.672416-CDS-H-elongata_contig20019:2530..26801622930127.672416-CDS-H-elongata_contig20019:2530..2680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20019 2531..2680 +
1691679291.6092842-CDS-H-elongata_contig20019:2530..26801691679291.6092842-CDS-H-elongata_contig20019:2530..2680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20019 2531..2680 +
1622930127.6852674-CDS-H-elongata_contig20019:3051..31531622930127.6852674-CDS-H-elongata_contig20019:3051..3153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20019 3052..3153 +
1691679291.6192923-CDS-H-elongata_contig20019:3051..31531691679291.6192923-CDS-H-elongata_contig20019:3051..3153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20019 3052..3153 +
1622930127.6977544-CDS-H-elongata_contig20019:4041..41661622930127.6977544-CDS-H-elongata_contig20019:4041..4166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20019 4042..4166 +
1691679291.6275823-CDS-H-elongata_contig20019:4041..41661691679291.6275823-CDS-H-elongata_contig20019:4041..4166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20019 4042..4166 +
1622930127.7152407-CDS-H-elongata_contig20019:4540..46791622930127.7152407-CDS-H-elongata_contig20019:4540..4679Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20019 4541..4679 +
1691679291.6365175-CDS-H-elongata_contig20019:4540..46791691679291.6365175-CDS-H-elongata_contig20019:4540..4679Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20019 4541..4679 +
1622930127.7313848-CDS-H-elongata_contig20019:5018..51771622930127.7313848-CDS-H-elongata_contig20019:5018..5177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20019 5019..5177 +
1691679291.6457214-CDS-H-elongata_contig20019:5018..51771691679291.6457214-CDS-H-elongata_contig20019:5018..5177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20019 5019..5177 +
1622930127.7483325-CDS-H-elongata_contig20019:5556..57631622930127.7483325-CDS-H-elongata_contig20019:5556..5763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20019 5557..5763 +
1691679291.6545691-CDS-H-elongata_contig20019:5556..57631691679291.6545691-CDS-H-elongata_contig20019:5556..5763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20019 5557..5763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20019.5636.1

>prot_H-elongata_contig20019.5636.1 ID=prot_H-elongata_contig20019.5636.1|Name=mRNA_H-elongata_contig20019.5636.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp
MQHILFYRPHSQCPLQGSPFVRGGAVPKRMFKLNIWLMAPSVIFDRVASE
THSVILTSGTLSPLHSLEAELGRSFSKRLLPHALALEAKHVIDTNNQVRV
IPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQLGRTIARLCQHVPSG
VLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQR
YETAVDAPGGGSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCP
KVNAKMLFNDWKRSGGGGSESGSGSKGVRRTWAEICAAGHHAVG
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mRNA from alignment at H-elongata_contig20019:2531..5763+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20019.5636.1 ID=mRNA_H-elongata_contig20019.5636.1|Name=mRNA_H-elongata_contig20019.5636.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3233bp|location=Sequence derived from alignment at H-elongata_contig20019:2531..5763+ (Himanthalia elongata Himel1 dioecious)
ATGCAACATATTTTGTTTTACAGACCACACTCGCAATGTCCATTGCAAGG ATCGCCCTTCGTGCGAGGCGGAGCCGTGCCCAAGCGAATGTTTAAGCTCA ACATCTGGCTTATGGCGCCGAGTGTCATCTTCGACCGAGTCGCCTCAGAG GTGACTTCGTGAAAGCGTCATCTTGGTAACGGGAGTTGGTACTATTAATA GGCACGGTAGCTGCGGGGTTGGCCAATTCTTCCCACTTCTGTACCTAGTC GTTTCTCGCGTTTTCTCGCGACTGGTTTATCATAACCTAGAGGAAAAAGG CGCGGAGCCGACTGCGAAAGCATTGGCTCGACCCGTTTGGAAGAAACGCC TTCATGCCACGTTCGATCGAGCGGGCCTCCACTAACGATGAAACGCCCTA ACCTGTAGCCTGCGATCTTACACCTATCCTACAATCAAATATGGAATGGC CCAATCCGATCGCTGCGTCGCGTAGTATCATGACGTGCGGTACAACATTT CAACCCGTGTCAATGCGACAGACACACTCGGTGATCCTAACCAGCGGAAC GCTAAGCCCTCTCCACTCTCTAGAGGCTGAACTTGGGCGGTCGTTTAGCA AGCGCCTTCTGCCTCACGCGTTGGTGAGAAAATGGAATAGAAGAGAGGCC GTACTAACCGGGATCCTGATTCCCTCTTTTGTTTGCGATTTTCGAGAGAC TGCTGTAATATAGTTCAAAAAATAAAGTGATGCGTTACACATGGCGCTAT TTGTTTACTGAACATTCGAGGGCGTGGAACGAAGTCGCCTTGAAGTTCGT CTGACGCAGCCTCGAGCAAGAATCACGCGGCGCACGATGATCTCTCTCCC AGAATATCATGTTTCGGCCCATAATTGCAGGGCTAAAATGAATCATGTTC AAGTAGTGGAAAGCATAGTAGATTGAACCTTAGAGGCTTTCGTCGGGGTC AAGAAAGCTGAGATTTTACGACTAGCCATCGAAAAGGAGCCTTCATCGAG TCCTCGTGGTGACCCTTTGCGTCCGTTCTCCTTTTTTTCGTTAGCTCGAC ACCAAGACCGCGTTCGCCCTAAATATCACGAGTCGTGTCGATCCCGGGAG CGCTTTTATTTTAAACAACTTATAGCAGTCGTCGAGTTGAAAGTAAGGTC GACCATATGTCAGCAAGGATCAAGCTTAAGGGGATCCGAGTATAGTGCAA GGCCGTTTACGGCGTCCAAGCTTCAAAGATTGACACACACACACGCACAT ACATACACATACATGCATACACATACATACATAAATATATTCTGTTGTCG GATACGCGTCTGCTTTCATGTCGGATCGAAAGGCCGAATCAGATGCAGAC GAACATCCTCCTCATCCTCGACGGTCTTCCTCCCTTGTAAACAGTACCAG GTATATCGCATGATATATATATATATATATATATATTAACTTGTACCAGT ATATGATCCGTTTTCTGTATTGCGTTCTCGACCATGGCCGTGACCATCGA ATCATCCTCAGGCCCTGGAGGCAAAGCACGTTATAGACACTAACAATCAG GTGCGGGTAATCCCCGTGGGCCGTTCGCCTGGAAACTACACCCTAAGGCA AGCCACATCCTTAGGAAATCTCGCACAAAGTAGCATGTACTGATTGGTCG CTGCTTGTTTTCCGAGCCTTGTTCGCAGCTACAGTACATTTCTGGTGTAG GTAATCACCGCTCTTCCTCATTTCTCGACAAAATATCTCCTCTTTTAACA GTTGTTTTACTCAAGGAGATATAATAATATAGAACAGTATAGCGGCGATG TTTTTTTATTGGTTCGTTGTACCCCGGATGAGCTACCTTCAACGCGCGAT TCCAACCGTACGCGTCTCAATTTACACCGAGCAAATTAATCAAAAGGGTT TCTAGAGTATTGTGCCTTATAATTTTGCACCTTTACCTTCCGGACATTAT TTTTCATGACCTACCTGCCTTCACTCTCCTCTTCTGCTGAAATTGTAGGT GCACCGAGAGTCGCCGGTCAAACGAATTCCTGAGACAGCTGGGGCGCACG ATCGCAAGGCTTTGCCAACATGTCCCGTCTGGGGTCCTGGTATTTTTGCC CTCTTACTCGACTCTTCGAAGAGTTGGGACAATCTGGCGCGCCAGCGAGG TGCGGTGACACCTGAGTTCAGCCCATCAAACGACTTGTGGGCTCTTTGTA TTACAATGCCGAATAAACGAGACAGCTGATGTCGAGCTTTGGTGGTCATT CAAGACTATGCGTAGTGACGGACAGTGTCATTTTCTCGACATGCAGCCAG GAAAAAGCTGCAGCGTGATTTGGTGGGACGAAAATAAGTAGCAGCTACAA ATGTGCTTCTCGCTAGGTCGCCTTGGTATGACTCCCCCATACTAGGAGTG TGATACATCAAAAACGGTTATTGTTTCCTTTACGAGGAGCTAAAGCTTCT CGGCCCGATCGTTTGTATCACCGAACCTTCGGCAAAAGGTTTGGCGGCGG TTGGAGCGCATCAAGGGAGTCATCGTGGAAGAGCCAGAGTCGGGGGCGGA GTTCAAGGCCGCAAGGCAGCGTTACGAGACGGCGGTGGATGCCCCCGGGG GGGGTAGTGCTTTGCTGTTGGCTGTGTACCGCGGGAAAATGAGCGAGGTA TCGCAATATGTGTACACGTACTCGGAAATACCGTTGCTTTTTCTTGTAAC GATGTGTCATTCAAAGCTGTCCACACAAGCGTTTGTGCTGATGCCAATGA ACATAGTATTGCTGGTACGCTGGTACGCTGGTACGTTTCAACAACCCGCA AATACTTTCGGTGGCAGCCGTCCTTCTTCAGGCATCTCGAACGTCTGGCC GATCGTTAGTTCAATCGCCAACCTCGCTCCCCCCTCTGATCCTTGCGGTG GTTGTCAGACCGCCCTTCCCGCTCAACGGCTCCCCTCGGAAATACGCGGA TCATATATGTCAATCAAACAAATTCTCTCTTCATCCTCGGTGGTCTTTCC TCGCTCCCCATGCGCATCGTGGTCAGGGCGTAAGCTTTAACGACCAGTAC GCCAGGGGGGTGCTGTGCGTGGGCATTCCCTTCTCCAACAGAGGTTGCCC CAAGGTGAATGCGAAGATGCTATTTAACGACTGGAAAAGAAGCGGTGGGG GCGGTAGCGAAAGCGGCAGCGGCAGCAAGGGTGTACGGCGCACGTGGGCC GAGATATGCGCCGCTGGGCATCACGCGGTTGGA
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Coding sequence (CDS) from alignment at H-elongata_contig20019:2531..5763+

>mRNA_H-elongata_contig20019.5636.1 ID=mRNA_H-elongata_contig20019.5636.1|Name=mRNA_H-elongata_contig20019.5636.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at H-elongata_contig20019:2531..5763+ (Himanthalia elongata Himel1 dioecious)
ATGCAACATATTTTGTTTTACAGACCACACTCGCAATGTCCATTGCAAGG
ATCGCCCTTCGTGCGAGGCGGAGCCGTGCCCAAGCGAATGTTTAAGCTCA
ACATCTGGCTTATGGCGCCGAGTGTCATCTTCGACCGAGTCGCCTCAGAG
ATGCAACATATTTTGTTTTACAGACCACACTCGCAATGTCCATTGCAAGG
ATCGCCCTTCGTGCGAGGCGGAGCCGTGCCCAAGCGAATGTTTAAGCTCA
ACATCTGGCTTATGGCGCCGAGTGTCATCTTCGACCGAGTCGCCTCAGAG
ACACACTCGGTGATCCTAACCAGCGGAACGCTAAGCCCTCTCCACTCTCT
AGAGGCTGAACTTGGGCGGTCGTTTAGCAAGCGCCTTCTGCCTCACGCGT
TGACACACTCGGTGATCCTAACCAGCGGAACGCTAAGCCCTCTCCACTCT
CTAGAGGCTGAACTTGGGCGGTCGTTTAGCAAGCGCCTTCTGCCTCACGC
GTTGGCCCTGGAGGCAAAGCACGTTATAGACACTAACAATCAGGTGCGGG
TAATCCCCGTGGGCCGTTCGCCTGGAAACTACACCCTAAGGCAAGCCACA
TCCTTAGGAAATCTCGCACAAAGTAGCATGCCCTGGAGGCAAAGCACGTT
ATAGACACTAACAATCAGGTGCGGGTAATCCCCGTGGGCCGTTCGCCTGG
AAACTACACCCTAAGGCAAGCCACATCCTTAGGAAATCTCGCACAAAGTA
GCATTCGCCGGTCAAACGAATTCCTGAGACAGCTGGGGCGCACGATCGCA
AGGCTTTGCCAACATGTCCCGTCTGGGGTCCTGGTATTTTTGCCCTCTTA
CTCGACTCTTCGAAGAGTTGGGACAATCTGGCGCGCCAGCGAGTCGCCGG
TCAAACGAATTCCTGAGACAGCTGGGGCGCACGATCGCAAGGCTTTGCCA
ACATGTCCCGTCTGGGGTCCTGGTATTTTTGCCCTCTTACTCGACTCTTC
GAAGAGTTGGGACAATCTGGCGCGCCAGCGAGGTTTGGCGGCGGTTGGAG
CGCATCAAGGGAGTCATCGTGGAAGAGCCAGAGTCGGGGGCGGAGTTCAA
GGCCGCAAGGCAGCGTTACGAGACGGCGGTGGATGCCCCCGGGGGGGGTA
GTGCTTTGCTGTTGGCTGTGTACCGCGGGAAAATGAGCGAGGTTTGGCGG
CGGTTGGAGCGCATCAAGGGAGTCATCGTGGAAGAGCCAGAGTCGGGGGC
GGAGTTCAAGGCCGCAAGGCAGCGTTACGAGACGGCGGTGGATGCCCCCG
GGGGGGGTAGTGCTTTGCTGTTGGCTGTGTACCGCGGGAAAATGAGCGAG
GGCGTAAGCTTTAACGACCAGTACGCCAGGGGGGTGCTGTGCGTGGGCAT
TCCCTTCTCCAACAGAGGTTGCCCCAAGGTGAATGCGAAGATGCTATTTA
ACGACTGGAAAAGAAGCGGTGGGGGCGGTAGCGAAAGCGGCAGCGGCAGC
AAGGGTGTACGGCGCACGTGGGCCGAGATATGCGCCGCTGGGCATCACGC
GGTTGGAGGCGTAAGCTTTAACGACCAGTACGCCAGGGGGGTGCTGTGCG
TGGGCATTCCCTTCTCCAACAGAGGTTGCCCCAAGGTGAATGCGAAGATG
CTATTTAACGACTGGAAAAGAAGCGGTGGGGGCGGTAGCGAAAGCGGCAG
CGGCAGCAAGGGTGTACGGCGCACGTGGGCCGAGATATGCGCCGCTGGGC
ATCACGCGGTTGGA
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