mRNA_H-elongata_contig20019.5636.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: D8LEJ0_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ0_ECTSI) HSP 1 Score: 322 bits (826), Expect = 5.090e-100 Identity = 173/296 (58.45%), Postives = 207/296 (69.93%), Query Frame = 1
Query: 28 HSQCPLQGSPFVRGGAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHAL-ALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQLGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAVDA-PGG---------GSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFNDWKRSGGGGSESGSGSKGVRRTWAEICAAGHHAVG 882
H+ CPL SPF R VP +M +LNIWLM+PSV+FD V ++THSVILTSGTLSPLHSL AELGRSF +RLLP ALEA HVI+ Q+RVIPVG SP N TL + + ++EF+ ++GRT+ L +H+P+GVLVFL SY L+R IWR EVW LERIKGVIVEEPE+ A+FKAA++RYE AVD PGG GSA+LLAVYRGKMSEG+SFND YARGVLCVGIP+ N G PK+ AK +NDWK G G G RR+W ++CAAG H G
Sbjct: 216 HASCPLGNSPFSRSSYVPAKMCRLNIWLMSPSVVFDEVPAQTHSVILTSGTLSPLHSLRAELGRSFGERLLPFPQQALEANHVINPERQLRVIPVGHSPRNKTL--------MCKKVCTDNDEFVEEIGRTVVALAKHIPAGVLVFLSSYKLLQRAVAIWRKCEVWADLERIKGVIVEEPEAAADFKAAKRRYEDAVDGGPGGRGRGRGSAGGSAILLAVYRGKMSEGISFNDHYARGVLCVGIPYPNLGDPKIVAKKCYNDWKSLGRKPEAKDRGEAG-RRSWPDVCAAGDHNYG 502
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE) HSP 1 Score: 238 bits (607), Expect = 1.410e-67 Identity = 130/227 (57.27%), Postives = 155/227 (68.28%), Query Frame = 1
Query: 28 HSQCPLQGSPFVRGGAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHAL-ALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQLGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAVDAPGGGSA----------LLLAVYRGKMSE 675
H+ CPL SPF R VP +M +LNIWLM+PSV+FD V ++THSVILTSGTLSPLHSL AELGRSF +RLLP ALEA HVI+ Q+RVIPVG SP N TL + +EF+ ++GRT+ L +H+P+GVLVFL SY L+R IWR EVW LER KGVIVEEPE+ A+FKAA++RYE AVD GG +LLAVYRGKMSE
Sbjct: 545 HASCPLGNSPFSRSSYVPAKMCRLNIWLMSPSVVFDEVPAQTHSVILTSGTLSPLHSLRAELGRSFGERLLPFPQQALEANHVINPGRQLRVIPVGHSPDNKTLT--------CKKVNTDDDEFVEEIGRTVVALAKHIPAGVLVFLSSYKLLQRAVAIWRKCEVWADLERSKGVIVEEPEAAADFKAAKRRYEEAVDGGPGGRXXXXXXXXXXXVLLAVYRGKMSE 763
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A0L0DAS5_THETB (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DAS5_THETB) HSP 1 Score: 167 bits (424), Expect = 4.080e-43 Identity = 103/256 (40.23%), Postives = 143/256 (55.86%), Query Frame = 1
Query: 49 GSPFVRGGAVPKRMF-------KLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHALALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQLGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAVDA-----PGGGSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFND 780
GS +GG+ P R LN W M P ++F+ +A E+ SVILTSGTLSPL S E+EL + P + LEA HVID QV V P+ ++P YTL N EF QLG T+ L VP G+LVF+ SY+ L ++ W+ + ++ +L ++K V V+EP + A+F+ ++ A+ P G A+LLAVYRGK+SEG+ F+D AR VLCVGIP+ N K+ K +ND
Sbjct: 996 GSSGNQGGSGPSRSAGETGFETSLNFWCMNPGIVFNSLAGESRSVILTSGTLSPLDSFESEL-------MAPFPIVLEAGHVIDMEKQVFVTPLVQAPSGYTLNSTWKHSNTL--------EFQDQLGETVKALAHIVPHGMLVFVTSYTLLDKLVKRWKETGLYAQLSQLKRV-VQEPRAKADFEGTMAKFYAAIKGSKASPPTIGGAVLLAVYRGKVSEGIDFSDDNARSVLCVGIPYPNIKDRKITIKRRYND 1235
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A8J4F1I0_9CHLO (Helicase ATP-binding domain-containing protein n=3 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F1I0_9CHLO) HSP 1 Score: 165 bits (418), Expect = 2.610e-42 Identity = 103/244 (42.21%), Postives = 134/244 (54.92%), Query Frame = 1
Query: 55 PFVRGGAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHALALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQ--LGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAVDAPGGGSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFND 780
P+ RG P L +W P+V F +A + HSVILTSGTLSPL S +ELG F RL EA HV+D + QV + R PG G+L ++ R S F Q G + R CQ +P GVL+F+PSY L ++ T W+++ +W RLE K V+VE E+G F+ A Y TAV GG L +AV RGK SEG+ F D +ARGV+ +GIPF KV K +ND
Sbjct: 360 PWGRG---PSAAVSLGLWCFNPAVAFRNLADKAHSVILTSGTLSPLDSFASELGTEFHIRL-------EAPHVVDMSRQVWASVIPRGPG----------GSLLSATYRESGRFDFQDDAGEAVLRYCQVIPGGVLLFMPSYGLLEKLMTRWKSTGLWARLEAAKTVVVEPREAGKGFEDAMATYYTAVRTGKGG--LFMAVCRGKASEGIDFADDHARGVILLGIPFPAIKDTKVKLKKEYND 581
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A8J4GC57_9CHLO (Helicase ATP-binding domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GC57_9CHLO) HSP 1 Score: 162 bits (410), Expect = 3.100e-41 Identity = 103/247 (41.70%), Postives = 134/247 (54.25%), Query Frame = 1
Query: 46 QGSPFVRGGAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHALALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQ--LGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAVDAPGGGSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFND 780
Q P+ RG P L +W P+V+F +A + HSVILTSGTLSPL S +ELG F RL EA HV+D + QV V R PG G+L ++ R S F Q G + R CQ +P GVL+F+PSYS L ++ W+++ + RLE K V+VE E+G F+ A Y AV GG L +AV RGK SEG+ F D +ARGV+ +GIPF KV K +ND
Sbjct: 588 QDEPWARG---PSAAVSLGLWCFNPAVVFRNLADKAHSVILTSGTLSPLDSFASELGTEFHIRL-------EAPHVVDMSRQVWAGVVPRGPG----------GSLLSATYRESGRFAFQDDAGEAVLRYCQVIPGGVLLFMPSYSLLEKLMARWKSTGLMSRLEAAKTVVVEPREAGKGFEDAMATYYAAVRNGKGG--LFMAVCRGKASEGIDFADHHARGVILLGIPFPAIKDTKVKLKKDYND 812
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A8J2NNP6_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2NNP6_9HEXA) HSP 1 Score: 152 bits (384), Expect = 7.460e-38 Identity = 93/249 (37.35%), Postives = 128/249 (51.41%), Query Frame = 1
Query: 64 RGGAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHALALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQ--LGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAVDAPGGGS--ALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFNDWKRSGG 798
R G K + +NIW + P+V F + HS++LTSGTLSP+ S ++EL P + LEA HVID NQV +G P N L S R F Q LG+ + R+CQ +P G+L F PSY L +V WR++ +W +L +K V++E A+F+ A + P A+ LAV RGK+SEG+ F D AR V+C+GIPF N +V K +N RS G
Sbjct: 525 RSGVTTKEILSINIWCLNPAVAFQELKDTVHSIVLTSGTLSPMQSFQSELD-------CPFPIKLEASHVID-RNQVFAGVLGMGPNNIKLN----------GSFRNVETFQYQDELGQLVLRVCQAMPHGILCFFPSYRLLEKVSERWRSTGLWHQLSSVKQVLIEPRSGSADFELAISTFYDCNATPLATQTGAMFLAVCRGKVSEGIDFADNNARAVICIGIPFPNFKDLQVELKREYNQANRSRG 755
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A812SWT3_9DINO (Rtel1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812SWT3_9DINO) HSP 1 Score: 151 bits (381), Expect = 1.950e-37 Identity = 99/239 (41.42%), Postives = 129/239 (53.97%), Query Frame = 1
Query: 97 LNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRS--FSKRLLPHALALEAKHVIDTNNQVR-VIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQLGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWR-------ASEVWRRLERIKGVIVEEPES-GAEFKAARQRYETAVDAPGGGSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFND 780
L+ WLM P V+F+ A H+V+L SGTL+PL SL+AEL S S R LP LEA HV+ + + V+P GN L +G Q + EFL +LG + +L +P GVL FLPSY TL W+ +WRR+E +KG +V EP S G E A + +V + G AL LAVYRGKMSEG+ F D R V+C+GIP+ P V AK +ND
Sbjct: 557 LSAWLMTPGVLFEIFAGSAHAVLLASGTLTPLSSLQAELADSPTLSSRALPEG-PLEALHVVSSKQMLAAVLPCS---GNLRL-----VGTYDQWH---TQEFLEELGNCVLQLILSIPGGVLCFLPSYQTLELATAAWKRRGGASGGGSLWRRMEEVKGALVSEPRSAGKEMSDACATFINSVRS--GHGALALAVYRGKMSEGLDFTDDLCRAVICIGIPYPQVNDPVVLAKRQWND 781
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A8J5XN14_DIALT (Helicase ATP-binding domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XN14_DIALT) HSP 1 Score: 150 bits (378), Expect = 5.650e-37 Identity = 102/272 (37.50%), Postives = 152/272 (55.88%), Query Frame = 1
Query: 70 GAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHALALEAKHVIDTNNQV-RVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQLGRTIARLCQHVPS--GVLVFLPSYSTLRRVGTIW--RASE----------------VWRRLERIKGVIVEEPES-GAEFKAARQRYETAVDAPGGGSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFNDWKRSGGGGSESGS 819
GA+ + +L +WL++PSVIF +A+ H+++LTSGTLSPL ++E ELG +F+ R+ P ++A+H + + RV+ V + T NLA+ E +LG T+ARL + P+ GVLVF+ S+S+ R++ +W RA+ VW L+ KGV++ E GA+ + + AVD G AL +AVYRGK+SEG+SFND YAR V+CVG+PF + ++ AK FND S G SG+
Sbjct: 1070 GAIAEWGVELCVWLLSPSVIFSALATAAHALVLTSGTLSPLGAMEKELGPAFAARVHPTIRPVQAEHAVGAEQLLARVVSVSAAGCPLTCNAE----NLARP------EVCLELGITLARLARATPTRAGVLVFVSSFSSARKLSAMWQDRAAHADHWQRAWNAAWPGLTVWAELQATKGVVMVEAHGPGADATEDVRAFRAAVD--DGRGALCIAVYRGKLSEGISFNDDYARLVVCVGVPFPSVADEQLKAKRAFNDLPSSRAEGLLSGA 1329
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: A0A3F2RKI7_9STRA (Helicase ATP-binding domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RKI7_9STRA) HSP 1 Score: 149 bits (377), Expect = 6.750e-37 Identity = 95/260 (36.54%), Postives = 137/260 (52.69%), Query Frame = 1
Query: 52 SPFVRGGAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHALALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSNEFLRQLGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAVDA---------------PGGGSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFNDWK 786
SP R G + K+ IW + +V F +A+E SVILTSGTLSP+ S ELG +F RL EA HV++ QV + + R PGN L+ S N Q ++ +G+ + + Q +P G+L+F PSYS L ++ T W+ +++W +E+ K V E +G +F A + Y+ + A P A+ LAVYRGK+SEG+ F+D AR VLCVGIPF N +V+ K + D K
Sbjct: 605 SPTKRNGN--EWQLKMCIWCLNAAVAFSDIANEARSVILTSGTLSPMDSFAGELGVNFPIRL-------EANHVVNMRKQVFIGSIMRGPGNVDLQ---STYNNQQDP-----KYQDSMGQVLLQYSQSIPGGILMFFPSYSLLNKLSTRWKQTKLWGEIEQFKTVYTEPRNAGKDFDALLEDYKDTIVAYSSTLPSGMGTTNGQPEKTGAIFLAVYRGKVSEGIDFSDDNARAVLCVGIPFPNVKDLQVSLKRKYQDQK 847
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Match: UPI001E674C93 (Fanconi anemia group J protein homolog n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E674C93) HSP 1 Score: 149 bits (377), Expect = 7.070e-37 Identity = 91/252 (36.11%), Postives = 139/252 (55.16%), Query Frame = 1
Query: 49 GSPFVRGGAVPKRMFKLNIWLMAPSVIFDRVASETHSVILTSGTLSPLHSLEAELGRSFSKRLLPHALALEAKHVIDTNNQVRVIPVGRSPGNYTLRQATSLGNLAQSSIRRSN--EFLRQLGRTIARLCQHVPSGVLVFLPSYSTLRRVGTIWRASEVWRRLERIKGVIVEEPESGAEFKAARQRYETAV------DAPGGGSALLLAVYRGKMSEGVSFNDQYARGVLCVGIPFSNRGCPKVNAKMLFND 780
G F RG + + ++ +N W + P V F+ V S T S+ILTSGTLSP++S ++EL +P + LEA HV+D NQV V VGR P + L Q++ R + EF +LGR + +C+ VP G+L FLPSY+ L ++ W+ + +W L +K V++ EP + +F+ A + + + G A +AV RGK+SEG+ F D AR V+ VGIP+ N +V+ K +N+
Sbjct: 375 GGWFGRGKSTVEWVYSINFWCLNPGVAFNSVGSSTRSIILTSGTLSPMNSFQSELS-------VPFKIQLEANHVVD-KNQVWVGTVGRGPTDQLL----------QATYRHTETWEFQDELGRLVLAVCKAVPRGILCFLPSYAMLNKLVDRWQVTGIWNELNEVK-VVITEPRNNEQFEEAITLFYDTIKNTGTENCEGINGAFFMAVCRGKVSEGLDFTDDNARAVIAVGIPYPNVKDIQVDLKRQYNN 607 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20019.5636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20019.5636.1 >prot_H-elongata_contig20019.5636.1 ID=prot_H-elongata_contig20019.5636.1|Name=mRNA_H-elongata_contig20019.5636.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp MQHILFYRPHSQCPLQGSPFVRGGAVPKRMFKLNIWLMAPSVIFDRVASEback to top mRNA from alignment at H-elongata_contig20019:2531..5763+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20019.5636.1 ID=mRNA_H-elongata_contig20019.5636.1|Name=mRNA_H-elongata_contig20019.5636.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3233bp|location=Sequence derived from alignment at H-elongata_contig20019:2531..5763+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20019:2531..5763+ >mRNA_H-elongata_contig20019.5636.1 ID=mRNA_H-elongata_contig20019.5636.1|Name=mRNA_H-elongata_contig20019.5636.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at H-elongata_contig20019:2531..5763+ (Himanthalia elongata Himel1 dioecious)back to top |