mRNA_H-elongata_contig200187.5635.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: D7FVP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP2_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 3.720e-23 Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 1
Query: 4 EKDGDIDLVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVDDQGVDLDEEVSRRHQRFGLIDQ 216
+ DIDL AM NARANLA G SPGAGLESAFDQADAAFADLIVTSVDDQGV LD+E + + G++DQ
Sbjct: 75 DSSDDIDLSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVDDQGVTLDDEEVQELAQSGMMDQ 145
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: A0A835ZCH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH3_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 7.370e-15 Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 1
Query: 13 GDIDLVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVDDQGVDLDEEVSRRHQRFGLID 213
GDI+L +A+ NAR NL EG+SPGAGL +A +QADAA+ADLI+TSVD + + L +E + G++D
Sbjct: 7 GDIELAKALDNARRNLEEGKSPGAGLATAEEQADAAYADLILTSVDQKHLSLGDEDLAELTKAGMMD 73
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: C1DZJ8_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZJ8_MICCC) HSP 1 Score: 55.5 bits (132), Expect = 6.620e-8 Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 22 DLVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVDDQGVDLDEEVSRRHQRFGLIDQ 216
D+ +AM NARA G SPGAGL A QA+AAFAD+I T+VD G LD E + R G +D+
Sbjct: 45 DISKAMENARACEKSGLSPGAGLADADAQAEAAFADMINTTVDVTGEALDSEELSQLSRGGKMDE 109
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: C1MJA6_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MJA6_MICPC) HSP 1 Score: 54.7 bits (130), Expect = 1.910e-7 Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 1
Query: 25 LVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVDDQGVDLDEEVSRRHQRFGLID 213
+ +M ARA A G SPGAGL SA DQA+AAFAD+I T+VD G LD + R G +D
Sbjct: 69 IAASMAAARACEASGMSPGAGLSSAEDQAEAAFADMINTTVDVTGEALDADARARLAEGGRMD 131
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: A0A7S2FA39_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2FA39_9CHLO) HSP 1 Score: 51.6 bits (122), Expect = 4.430e-6 Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1
Query: 25 LVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVD 150
L AM+NAR N EG SPGAGL +A +QA+AAFADLI TS+D
Sbjct: 122 LEFAMSNARKNSLEGLSPGAGLMTAEEQAEAAFADLINTSLD 163
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: A0A7R9XNM3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7R9XNM3_9CHLO) HSP 1 Score: 51.6 bits (122), Expect = 4.840e-6 Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1
Query: 25 LVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVD 150
L AM+NAR N EG SPGAGL +A +QA+AAFADLI TS+D
Sbjct: 119 LEFAMSNARKNSLEGLSPGAGLMTAQEQAEAAFADLINTSLD 160
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: A0A830HV35_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HV35_9CHLO) HSP 1 Score: 49.7 bits (117), Expect = 2.900e-5 Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1
Query: 37 MTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVD 150
M+NAR N EG SPGAGL +A +QA+AAFADLI TS+D
Sbjct: 71 MSNARKNSLEGLSPGAGLMTAQEQAEAAFADLINTSLD 108
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: D6PJB7_9ZZZZ (Uncharacterized protein n=1 Tax=uncultured organism MedDCM-OCT-S08-C998 TaxID=743643 RepID=D6PJB7_9ZZZZ) HSP 1 Score: 47.8 bits (112), Expect = 3.070e-5 Identity = 24/52 (46.15%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 25 LVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVDDQGVDLDEEV 180
+ +A+ A+ N +SPGAG+E AF+ A+AA+ADLI+TS+D + +L EE+
Sbjct: 1 MEQALAQAKENRDSNQSPGAGVEDAFEAAEAAYADLILTSIDQR--ELGEEL 50 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig200187.5635.1 >prot_H-elongata_contig200187.5635.1 ID=prot_H-elongata_contig200187.5635.1|Name=mRNA_H-elongata_contig200187.5635.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp MEKDGDIDLVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVDback to top mRNA from alignment at H-elongata_contig200187:800..1015+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig200187.5635.1 ID=mRNA_H-elongata_contig200187.5635.1|Name=mRNA_H-elongata_contig200187.5635.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig200187:800..1015+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig200187:800..1015+ >mRNA_H-elongata_contig200187.5635.1 ID=mRNA_H-elongata_contig200187.5635.1|Name=mRNA_H-elongata_contig200187.5635.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig200187:800..1015+ (Himanthalia elongata Himel1 dioecious)back to top |