mRNA_H-elongata_contig200187.5635.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig200187.5635.1
Unique NamemRNA_H-elongata_contig200187.5635.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: D7FVP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP2_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.720e-23
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    4 EKDGDIDLVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVDDQGVDLDEEVSRRHQRFGLIDQ 216
            +   DIDL  AM NARANLA G SPGAGLESAFDQADAAFADLIVTSVDDQGV LD+E  +   + G++DQ
Sbjct:   75 DSSDDIDLSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVDDQGVTLDDEEVQELAQSGMMDQ 145          
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: A0A835ZCH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 7.370e-15
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   13 GDIDLVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVDDQGVDLDEEVSRRHQRFGLID 213
            GDI+L +A+ NAR NL EG+SPGAGL +A +QADAA+ADLI+TSVD + + L +E      + G++D
Sbjct:    7 GDIELAKALDNARRNLEEGKSPGAGLATAEEQADAAYADLILTSVDQKHLSLGDEDLAELTKAGMMD 73          
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: C1DZJ8_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZJ8_MICCC)

HSP 1 Score: 55.5 bits (132), Expect = 6.620e-8
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   22 DLVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVDDQGVDLDEEVSRRHQRFGLIDQ 216
            D+ +AM NARA    G SPGAGL  A  QA+AAFAD+I T+VD  G  LD E   +  R G +D+
Sbjct:   45 DISKAMENARACEKSGLSPGAGLADADAQAEAAFADMINTTVDVTGEALDSEELSQLSRGGKMDE 109          
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: C1MJA6_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MJA6_MICPC)

HSP 1 Score: 54.7 bits (130), Expect = 1.910e-7
Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   25 LVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVDDQGVDLDEEVSRRHQRFGLID 213
            +  +M  ARA  A G SPGAGL SA DQA+AAFAD+I T+VD  G  LD +   R    G +D
Sbjct:   69 IAASMAAARACEASGMSPGAGLSSAEDQAEAAFADMINTTVDVTGEALDADARARLAEGGRMD 131          
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: A0A7S2FA39_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2FA39_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 4.430e-6
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   25 LVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVD 150
            L  AM+NAR N  EG SPGAGL +A +QA+AAFADLI TS+D
Sbjct:  122 LEFAMSNARKNSLEGLSPGAGLMTAEEQAEAAFADLINTSLD 163          
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: A0A7R9XNM3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7R9XNM3_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 4.840e-6
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   25 LVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVD 150
            L  AM+NAR N  EG SPGAGL +A +QA+AAFADLI TS+D
Sbjct:  119 LEFAMSNARKNSLEGLSPGAGLMTAQEQAEAAFADLINTSLD 160          
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: A0A830HV35_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HV35_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 2.900e-5
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1
Query:   37 MTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVD 150
            M+NAR N  EG SPGAGL +A +QA+AAFADLI TS+D
Sbjct:   71 MSNARKNSLEGLSPGAGLMTAQEQAEAAFADLINTSLD 108          
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Match: D6PJB7_9ZZZZ (Uncharacterized protein n=1 Tax=uncultured organism MedDCM-OCT-S08-C998 TaxID=743643 RepID=D6PJB7_9ZZZZ)

HSP 1 Score: 47.8 bits (112), Expect = 3.070e-5
Identity = 24/52 (46.15%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   25 LVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVDDQGVDLDEEV 180
            + +A+  A+ N    +SPGAG+E AF+ A+AA+ADLI+TS+D +  +L EE+
Sbjct:    1 MEQALAQAKENRDSNQSPGAGVEDAFEAAEAAYADLILTSIDQR--ELGEEL 50          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200187.5635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FVP2_ECTSI3.720e-2370.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCH3_9STRA7.370e-1553.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
C1DZJ8_MICCC6.620e-850.77Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
C1MJA6_MICPC1.910e-750.79Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A7S2FA39_9CHLO4.430e-666.67Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]
A0A7R9XNM3_9CHLO4.840e-666.67Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]
A0A830HV35_9CHLO2.900e-568.42Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
D6PJB7_9ZZZZ3.070e-546.15Uncharacterized protein n=1 Tax=uncultured organis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig200187contigH-elongata_contig200187:800..1015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.8e-17
Seed eggNOG ortholog2880.D7FVP2
EggNOG OGs2D476@1,2SU5J@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_006010.1
Exons1
Model size216
Cds size216
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930127.617808-CDS-H-elongata_contig200187:799..10151622930127.617808-CDS-H-elongata_contig200187:799..1015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200187 800..1015 +
1691679291.5996563-CDS-H-elongata_contig200187:799..10151691679291.5996563-CDS-H-elongata_contig200187:799..1015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200187 800..1015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig200187.5635.1prot_H-elongata_contig200187.5635.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig200187 800..1015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig200187.5635.1

>prot_H-elongata_contig200187.5635.1 ID=prot_H-elongata_contig200187.5635.1|Name=mRNA_H-elongata_contig200187.5635.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MEKDGDIDLVRAMTNARANLAEGRSPGAGLESAFDQADAAFADLIVTSVD
DQGVDLDEEVSRRHQRFGLIDQ
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mRNA from alignment at H-elongata_contig200187:800..1015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig200187.5635.1 ID=mRNA_H-elongata_contig200187.5635.1|Name=mRNA_H-elongata_contig200187.5635.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig200187:800..1015+ (Himanthalia elongata Himel1 dioecious)
ATGGAGAAGGACGGTGATATTGACCTCGTCAGGGCTATGACCAATGCGCG AGCAAATCTCGCGGAGGGGCGATCACCAGGCGCAGGACTGGAGTCAGCCT TCGATCAAGCGGATGCAGCGTTCGCCGACCTGATCGTCACATCTGTGGAC GACCAAGGTGTGGATCTCGATGAAGAGGTAAGCAGGCGTCACCAGCGGTT TGGATTAATTGACCAA
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Coding sequence (CDS) from alignment at H-elongata_contig200187:800..1015+

>mRNA_H-elongata_contig200187.5635.1 ID=mRNA_H-elongata_contig200187.5635.1|Name=mRNA_H-elongata_contig200187.5635.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig200187:800..1015+ (Himanthalia elongata Himel1 dioecious)
ATGGAGAAGGACGGTGATATTGACCTCGTCAGGGCTATGACCAATGCGCG
AGCAAATCTCGCGGAGGGGCGATCACCAGGCGCAGGACTGGAGTCAGCCT
TCGATCAAGCGGATGCAGCGTTCGCCGACCTGATCGTCACATCTGTGGAC
GACCAAGGTGTGGATCTCGATGAAGAGGTAAGCAGGCGTCACCAGCGGTT
TGGATTAATTGACCAAATGGAGAAGGACGGTGATATTGACCTCGTCAGGG
CTATGACCAATGCGCGAGCAAATCTCGCGGAGGGGCGATCACCAGGCGCA
GGACTGGAGTCAGCCTTCGATCAAGCGGATGCAGCGTTCGCCGACCTGAT
CGTCACATCTGTGGACGACCAAGGTGTGGATCTCGATGAAGAGGTAAGCA
GGCGTCACCAGCGGTTTGGATTAATTGACCAA
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