mRNA_H-elongata_contig200071.5634.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig200071.5634.1
Unique NamemRNA_H-elongata_contig200071.5634.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 110 bits (274), Expect = 1.650e-25
Identity = 55/119 (46.22%), Postives = 80/119 (67.23%), Query Frame = 1
Query:    4 VERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYRDSRQQVGLLKKAMYGLGHA 360
            V RP+ + ++G++ VFK K   DG++EKYK RLVAQGF QV+GI Y E+  P     SIR++L++ A   WE  Q+DV  A+L  ++EE+IY+++P  ++ S   V  LKKA+YGL  A
Sbjct: 1030 VPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQA 1148          
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA)

HSP 1 Score: 104 bits (260), Expect = 4.110e-25
Identity = 51/119 (42.86%), Postives = 81/119 (68.07%), Query Frame = 1
Query:    1 VVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYR--DSRQQVGLLKKAMYGL 351
            +V++P+ K  +G R +F  K   DG IE+YK RLVA+G+ Q  GI Y+E+  P     ++R+VL++ A  GW+  QLDV  A+L  ++EE++Y+E+P+ ++  + R +V LLKKA+YGL
Sbjct:   25 IVDKPRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGL 143          
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 100 bits (248), Expect = 5.050e-24
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 VVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAY--------RDSRQQVGLLKKAMYGLGHAG 363
            +V+RP+GKTV+G+R VF+ K+  DG +E+ K RLVA+GF Q+ G HY E+       +SIR V+++ A    E  QLD   AYL  ++EE+IY+E+P+          +D   +V  ++KA+YGL  +G
Sbjct:   51 LVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSG 179          
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A2K3JLR7_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JLR7_TRIPR)

HSP 1 Score: 98.2 bits (243), Expect = 8.160e-24
Identity = 48/117 (41.03%), Postives = 77/117 (65.81%), Query Frame = 1
Query:   13 PKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYRDSRQ-QVGLLKKAMYGLGHA 360
            P GK ++G R V+K K    G++EKYK RLVA+GF Q++G  + E+  P     ++R +LS+  A GWE  Q+DV  A+L  D+EE++Y+++P+ Y+  ++  V  L+K++YGL  A
Sbjct:   20 PVGKKIVGCRWVYKVKYKASGEVEKYKARLVAKGFTQIEGEDFNETFAPVAKMTTVRCLLSVAVAKGWELHQMDVSNAFLHGDLEEEVYMQVPDGYQVPKEGMVCRLRKSLYGLKQA 136          
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A2G2YGH0_CAPAN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G2YGH0_CAPAN)

HSP 1 Score: 98.2 bits (243), Expect = 8.390e-24
Identity = 45/121 (37.19%), Postives = 81/121 (66.94%), Query Frame = 1
Query:    1 VVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYR-DSRQQVGLLKKAMYGLGHA 360
            +V+ PKGK  +G++ ++K K   +G++E++K RLVA+G+ Q +G+ Y E+  P     ++R  +++ A+ GW  +Q+DV  A+L+ D+EE++Y+E+PE +R     +V  L K++YGL  A
Sbjct:   16 IVDLPKGKNTVGSKWIYKIKYLSNGEVERFKERLVAKGYSQQEGLDYHETFSPVAKMVTVRCTITLAASQGWNLYQMDVHNAFLQGDLEEEVYIEIPEGFRRQGEDKVCKLIKSLYGLKQA 136          
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A5B7BX31_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BX31_DAVIN)

HSP 1 Score: 97.8 bits (242), Expect = 1.550e-23
Identity = 49/111 (44.14%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   19 GKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYRDSRQQVGLLKKAMYGL 351
            GKTV+G + ++K K   DG IE+YK RLVA+GF Q  GI YEE+  P     S+R +L++ A   W+ +Q+DV  A+L  D++E++Y++ P  +  S QQV  L +A+YGL
Sbjct:   38 GKTVVGCKWIYKIKTRSDGSIERYKARLVARGFTQEYGIDYEETFAPVARLTSVRSLLAIAAVRKWKLFQMDVKNAFLNGDLQEEVYMQPPPGFPHSPQQVCKLHRALYGL 148          
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY)

HSP 1 Score: 103 bits (257), Expect = 3.180e-23
Identity = 55/120 (45.83%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    4 VERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYRDSRQQVGLLKKAMYGLGHAG 363
            VERP+ + V+  + VFK K   DG+IEKYK RLVA+GF QV+G+ + E+  P    AS+R +L++ A L  E  Q+DV  A+L  D++E+IY+++P  +R S   V  L KA+YGL  AG
Sbjct:  902 VERPQNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLNKALYGLKQAG 1021          
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 103 bits (257), Expect = 3.180e-23
Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    4 VERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYRDSRQQVGLLKKAMYGLGHAG 363
            VERP+ + V+  + VFK K   DG+IEKYK RLVA+GF QV+G+ + E+  P    AS+R +L++ A L  E  Q+DV  A+L  D++E+IY+++P  +R S   +  L KA+YGL  AG
Sbjct:  638 VERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAG 757          
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 103 bits (256), Expect = 4.330e-23
Identity = 51/121 (42.15%), Postives = 81/121 (66.94%), Query Frame = 1
Query:    1 VVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYRDS-RQQVGLLKKAMYGLGHA 360
            VV+ P  K  +G + ++K K + DG IE+YK RLVAQGF Q++GI Y+E   P     S+R  L+++ A  WE  Q+DV+ A+L  D+EE++Y++LPE ++ + + +V  L+K++YGL  A
Sbjct:  584 VVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQA 704          
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A2R6QI23_ACTCC (Endonuclease (Fragment) n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QI23_ACTCC)

HSP 1 Score: 102 bits (255), Expect = 4.340e-23
Identity = 52/120 (43.33%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    1 VVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYRDSRQQVGLLKKAMYGLGHA 360
            +V+ P GK+++G R V+K K   DG +E+YK RLVA+GF Q  GI YEE+  P     S+R +L++ A  GW   Q+DV  A+L  D+ E++Y++LP     S  QV  L++A+YGL  A
Sbjct:  347 LVDLPPGKSIIGCRWVYKIKTRADGTVERYKARLVAKGFTQEYGIDYEETFAPVARLTSVRSLLAVAATRGWSLCQMDVKNAFLNGDLTEEVYMQLPPGSSSSSNQVCRLRRALYGLKQA 466          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK1.650e-2546.22Integrase catalytic domain-containing protein (Fra... [more]
A0A151RGT1_CAJCA4.110e-2542.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9Y7J8_LYGHE5.050e-2441.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3JLR7_TRIPR8.160e-2441.03Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G2YGH0_CAPAN8.390e-2437.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5B7BX31_DAVIN1.550e-2344.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401H317_9APHY3.180e-2345.83Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H123_9APHY3.180e-2345.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E4T4_VITVI4.330e-2342.15Retrovirus-related Pol polyprotein from transposon... [more]
A0A2R6QI23_ACTCC4.340e-2343.33Endonuclease (Fragment) n=1 Tax=Actinidia chinensi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig200071contigH-elongata_contig200071:700..1074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score101.7
Seed ortholog evalue2.6e-19
Seed eggNOG ortholog4081.Solyc03g062850.1.1
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGs37SNQ@33090,3GHRQ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930127.5678554-CDS-H-elongata_contig200071:699..10741622930127.5678554-CDS-H-elongata_contig200071:699..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200071 700..1074 +
1691679291.5861318-CDS-H-elongata_contig200071:699..10741691679291.5861318-CDS-H-elongata_contig200071:699..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200071 700..1074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig200071.5634.1prot_H-elongata_contig200071.5634.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig200071 700..1074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig200071.5634.1

>prot_H-elongata_contig200071.5634.1 ID=prot_H-elongata_contig200071.5634.1|Name=mRNA_H-elongata_contig200071.5634.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
VVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEES
SYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAY
RDSRQQVGLLKKAMYGLGHAGLLG*
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mRNA from alignment at H-elongata_contig200071:700..1074+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig200071.5634.1 ID=mRNA_H-elongata_contig200071.5634.1|Name=mRNA_H-elongata_contig200071.5634.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig200071:700..1074+ (Himanthalia elongata Himel1 dioecious)
GTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGGACGAGAGTAGTTTT CAAGCGAAAAATCGATAAGGATGGAAAGATCGAGAAGTATAAATGTCGTC TCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACATTACGAGGAATCC TCCTATCCGACTCCTGCGCAGGCCAGCATTAGGATGGTACTTAGCATGAT CGCGGCTCTCGGCTGGGAGGCGTGGCAGCTGGACGTCGACATGGCCTACC TGGAGGCCGATGTGGAGGAGGATATCTACGTTGAGCTCCCGGAGGCATAC CGTGACTCCAGGCAGCAAGTCGGCCTACTAAAGAAGGCAATGTACGGACT CGGCCACGCCGGGCTGCTGGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig200071:700..1074+

>mRNA_H-elongata_contig200071.5634.1 ID=mRNA_H-elongata_contig200071.5634.1|Name=mRNA_H-elongata_contig200071.5634.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig200071:700..1074+ (Himanthalia elongata Himel1 dioecious)
GTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGGACGAGAGTAGTTTT
CAAGCGAAAAATCGATAAGGATGGAAAGATCGAGAAGTATAAATGTCGTC
TCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACATTACGAGGAATCC
TCCTATCCGACTCCTGCGCAGGCCAGCATTAGGATGGTACTTAGCATGAT
CGCGGCTCTCGGCTGGGAGGCGTGGCAGCTGGACGTCGACATGGCCTACC
TGGAGGCCGATGTGGAGGAGGATATCTACGTTGAGCTCCCGGAGGCATAC
CGTGACTCCAGGCAGCAAGTCGGCCTACTAAAGAAGGCAATGTACGGACT
CGGCCACGCCGGGCTGCTGGGGTAAGTGGTGGAGCGCCCAAAAGGGAAGA
CGGTGTTGGGGACGAGAGTAGTTTTCAAGCGAAAAATCGATAAGGATGGA
AAGATCGAGAAGTATAAATGTCGTCTCGTGGCGCAGGGTTTCAGGCAGGT
CAAAGGCATACATTACGAGGAATCCTCCTATCCGACTCCTGCGCAGGCCA
GCATTAGGATGGTACTTAGCATGATCGCGGCTCTCGGCTGGGAGGCGTGG
CAGCTGGACGTCGACATGGCCTACCTGGAGGCCGATGTGGAGGAGGATAT
CTACGTTGAGCTCCCGGAGGCATACCGTGACTCCAGGCAGCAAGTCGGCC
TACTAAAGAAGGCAATGTACGGACTCGGCCACGCCGGGCTGCTGGGGTAA
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