mRNA_H-elongata_contig200071.5634.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 110 bits (274), Expect = 1.650e-25 Identity = 55/119 (46.22%), Postives = 80/119 (67.23%), Query Frame = 1
Query: 4 VERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYRDSRQQVGLLKKAMYGLGHA 360
V RP+ + ++G++ VFK K DG++EKYK RLVAQGF QV+GI Y E+ P SIR++L++ A WE Q+DV A+L ++EE+IY+++P ++ S V LKKA+YGL A
Sbjct: 1030 VPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQA 1148
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA) HSP 1 Score: 104 bits (260), Expect = 4.110e-25 Identity = 51/119 (42.86%), Postives = 81/119 (68.07%), Query Frame = 1
Query: 1 VVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYR--DSRQQVGLLKKAMYGL 351
+V++P+ K +G R +F K DG IE+YK RLVA+G+ Q GI Y+E+ P ++R+VL++ A GW+ QLDV A+L ++EE++Y+E+P+ ++ + R +V LLKKA+YGL
Sbjct: 25 IVDKPRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGL 143
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE) HSP 1 Score: 100 bits (248), Expect = 5.050e-24 Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = 1
Query: 1 VVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAY--------RDSRQQVGLLKKAMYGLGHAG 363
+V+RP+GKTV+G+R VF+ K+ DG +E+ K RLVA+GF Q+ G HY E+ +SIR V+++ A E QLD AYL ++EE+IY+E+P+ +D +V ++KA+YGL +G
Sbjct: 51 LVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSG 179
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A2K3JLR7_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JLR7_TRIPR) HSP 1 Score: 98.2 bits (243), Expect = 8.160e-24 Identity = 48/117 (41.03%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 13 PKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYRDSRQ-QVGLLKKAMYGLGHA 360
P GK ++G R V+K K G++EKYK RLVA+GF Q++G + E+ P ++R +LS+ A GWE Q+DV A+L D+EE++Y+++P+ Y+ ++ V L+K++YGL A
Sbjct: 20 PVGKKIVGCRWVYKVKYKASGEVEKYKARLVAKGFTQIEGEDFNETFAPVAKMTTVRCLLSVAVAKGWELHQMDVSNAFLHGDLEEEVYMQVPDGYQVPKEGMVCRLRKSLYGLKQA 136
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A2G2YGH0_CAPAN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G2YGH0_CAPAN) HSP 1 Score: 98.2 bits (243), Expect = 8.390e-24 Identity = 45/121 (37.19%), Postives = 81/121 (66.94%), Query Frame = 1
Query: 1 VVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYR-DSRQQVGLLKKAMYGLGHA 360
+V+ PKGK +G++ ++K K +G++E++K RLVA+G+ Q +G+ Y E+ P ++R +++ A+ GW +Q+DV A+L+ D+EE++Y+E+PE +R +V L K++YGL A
Sbjct: 16 IVDLPKGKNTVGSKWIYKIKYLSNGEVERFKERLVAKGYSQQEGLDYHETFSPVAKMVTVRCTITLAASQGWNLYQMDVHNAFLQGDLEEEVYIEIPEGFRRQGEDKVCKLIKSLYGLKQA 136
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A5B7BX31_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BX31_DAVIN) HSP 1 Score: 97.8 bits (242), Expect = 1.550e-23 Identity = 49/111 (44.14%), Postives = 73/111 (65.77%), Query Frame = 1
Query: 19 GKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYRDSRQQVGLLKKAMYGL 351
GKTV+G + ++K K DG IE+YK RLVA+GF Q GI YEE+ P S+R +L++ A W+ +Q+DV A+L D++E++Y++ P + S QQV L +A+YGL
Sbjct: 38 GKTVVGCKWIYKIKTRSDGSIERYKARLVARGFTQEYGIDYEETFAPVARLTSVRSLLAIAAVRKWKLFQMDVKNAFLNGDLQEEVYMQPPPGFPHSPQQVCKLHRALYGL 148
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY) HSP 1 Score: 103 bits (257), Expect = 3.180e-23 Identity = 55/120 (45.83%), Postives = 79/120 (65.83%), Query Frame = 1
Query: 4 VERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYRDSRQQVGLLKKAMYGLGHAG 363
VERP+ + V+ + VFK K DG+IEKYK RLVA+GF QV+G+ + E+ P AS+R +L++ A L E Q+DV A+L D++E+IY+++P +R S V L KA+YGL AG
Sbjct: 902 VERPQNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLNKALYGLKQAG 1021
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY) HSP 1 Score: 103 bits (257), Expect = 3.180e-23 Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = 1
Query: 4 VERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYRDSRQQVGLLKKAMYGLGHAG 363
VERP+ + V+ + VFK K DG+IEKYK RLVA+GF QV+G+ + E+ P AS+R +L++ A L E Q+DV A+L D++E+IY+++P +R S + L KA+YGL AG
Sbjct: 638 VERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAG 757
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI) HSP 1 Score: 103 bits (256), Expect = 4.330e-23 Identity = 51/121 (42.15%), Postives = 81/121 (66.94%), Query Frame = 1
Query: 1 VVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYRDS-RQQVGLLKKAMYGLGHA 360
VV+ P K +G + ++K K + DG IE+YK RLVAQGF Q++GI Y+E P S+R L+++ A WE Q+DV+ A+L D+EE++Y++LPE ++ + + +V L+K++YGL A
Sbjct: 584 VVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQA 704
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Match: A0A2R6QI23_ACTCC (Endonuclease (Fragment) n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QI23_ACTCC) HSP 1 Score: 102 bits (255), Expect = 4.340e-23 Identity = 52/120 (43.33%), Postives = 76/120 (63.33%), Query Frame = 1
Query: 1 VVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESSYPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEDIYVELPEAYRDSRQQVGLLKKAMYGLGHA 360
+V+ P GK+++G R V+K K DG +E+YK RLVA+GF Q GI YEE+ P S+R +L++ A GW Q+DV A+L D+ E++Y++LP S QV L++A+YGL A
Sbjct: 347 LVDLPPGKSIIGCRWVYKIKTRADGTVERYKARLVAKGFTQEYGIDYEETFAPVARLTSVRSLLAVAATRGWSLCQMDVKNAFLNGDLTEEVYMQLPPGSSSSSNQVCRLRRALYGLKQA 466 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200071.5634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig200071.5634.1 >prot_H-elongata_contig200071.5634.1 ID=prot_H-elongata_contig200071.5634.1|Name=mRNA_H-elongata_contig200071.5634.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp VVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCRLVAQGFRQVKGIHYEESback to top mRNA from alignment at H-elongata_contig200071:700..1074+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig200071.5634.1 ID=mRNA_H-elongata_contig200071.5634.1|Name=mRNA_H-elongata_contig200071.5634.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig200071:700..1074+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig200071:700..1074+ >mRNA_H-elongata_contig200071.5634.1 ID=mRNA_H-elongata_contig200071.5634.1|Name=mRNA_H-elongata_contig200071.5634.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig200071:700..1074+ (Himanthalia elongata Himel1 dioecious)back to top |