mRNA_H-elongata_contig200.5631.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig200.5631.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE) HSP 1 Score: 261 bits (668), Expect = 1.330e-69 Identity = 239/802 (29.80%), Postives = 356/802 (44.39%), Query Frame = 1
Query: 436 LGMGEDARTILGLLSRCTHYLENNPWECPPAPVVEKGIDAMKKYYGELVKTKPVLID-----LRKVVFIGHSGSGKTSLIKSIKAGKGHLA--LEEELETVGVSVHGINFKNERRGDTDMKLYDLAGQVEYYGLHQLFLTERALYVLMWDASRFMDKITSQELAHH-LNEWLVTLHLRAPHSTVLLCGTHKDKCVPSNILTKSLAWLKRSRSIEAILEDVEYSIKDKNMQWKNEQS-QGKHSTSVRGLKLECGIQLIS----SSPTCYCDNGLADFLQRLKICGDSTRWLIPPSWRLALVVLDAVRDGIDPVKAARCHINPNDPLP---VASSSKICWVPCVQLQISWKSVLNPLELDLPPEVRPDDPEFTLQSVIDMRERAGSLLKHPRG--VFLDVEDFALSLAPILNHKTQQNDSRGVAVFADRKLDSQWKLNARTRLVRMGILEREFALFLWKED--------GVLPEQTFDVLVKLGILLPLPRR------DEQGVYRPCDWESTAAWDCIEEYLVLMRLPLNPTHKTLARFNAFERLRGDWGVVVRWEFKVGSTPHGLVERLVASCHAIGNVVRDTCWRRGACFVCHKASFDAAGGSFALALKFTQSSTSNIPTTGTLVVQAFGNRKGRALWGALRFVISAAWDIFQEFPGLRWEAWVECPKHHGQLQHYLACVDDSEEMSPGRSIIRPYESPICGCTEGVASSLGKVLRRSPTWDPSHLDDVFKTGDRSSQYARSFNDDGEQRFKAAIDIALDATQEIPTMDEARESEG------WKTPEWVKDALFAGPMGLFT 2727
LG EDA ++ L YL NPW PP VVE G+ A+K+Y ++ + K D L KVV +G + +GKTSL+ SI AG+G + TVG+ + + DT ++ +D AGQV+Y G+HQ FLT RALY+L+ D +++ + H + WL L+LRAP STV+L D + T +R R + A+ W + +G+ V L L G+ +S SP L + R +T +PP+W LAL V+ A+R +P+ AAR + +PLP VA ++ +L W+SV++ L D+P + + E L+ + + + AG L+ G +FLDV + L+PIL+HK + ++ +++W L R L GIL REFAL +W+E + E F VL+KLG+ LP+ RR D P D + + LV+MRL F+ V ++WEF P+GL+ERL+ASCH +G V CWR GA F H F G K S TS + + FG +W A+R+V SA ++ +E+PG+ W W++C KH Q Y+A ++ P P ++ C C G VLR + L V TG + F+ D + +E T + RE+ G W+T +W LF + LFT
Sbjct: 9 LGETEDALRLVERLGDSL-YLHGNPWIMPPEGVVEAGLTAVKRYLVDVREAKKAGADVTSLQLLKVVLVGSASAGKTSLMHSIIAGRGSPTEGTPAQASTVGMELRPCQLQ-----DTKVEFFDCAGQVDYAGMHQTFLTRRALYLLVVDITKYHGVDDLDKAIHDDIMRWLYYLYLRAPGSTVVLVANKCDGSIDKFAETAERIQ-RRVRELVAV--------------WHEARGLRGRSKGHVTDLTLLPGMSRVSCQEKGSPEASGLPALIALISRQA----ATAIHVPPAWDLALEVIGALRASCNPIAAARDKLGLPNPLPADGVADVHAFAFISKDELSRKWRSVVDNLRDDVPAAMI-SNWESALEGALWISDFAGHTLRVDGGDGIFLDVLWLSKCLSPILSHKLK-----------NQPFENRW-LWMRDDLAGDGILRREFALHIWRESVGEVVMESEEVAEALFSVLIKLGVALPMGRRTLLAHSDRSTPTAPSDVSGS------NDMLVIMRLSETCNEHQRTLFDGLASKMPRDRVTLKWEFDKAGPPYGLIERLIASCHVLGEVETGACWRYGAVFQSHDMRF--VEGRNVRFYKIALSMTSYNESERVFTAKVFGPLDSERVWVAIRYVASAMINLSKEWPGVLWTGWLDCEKHPSQ-HLYMASSVEARVGDPLLPAAAP-DARRCDCL----LEPGGVLRLAV----EELGPVIDTG--------------KDPFEGLSDEDTEDPEETVTCNCVREAFGHWLPHAWRTAKW----LFGLAVVLFT 736
BLAST of mRNA_H-elongata_contig200.5631.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE) HSP 1 Score: 257 bits (657), Expect = 3.120e-67 Identity = 222/726 (30.58%), Postives = 329/726 (45.32%), Query Frame = 1
Query: 436 LGMGEDARTILGLLSRCTHYLENNPWECPPAPVVEKGIDAMKKYYGELVKTKPV-----LIDLRKVVFIGHSGSGKTSLIKSIKAGKGHLALEEELETVG----VSVHGINFKNERRGDTDMKLYDLAGQVEYYGLHQLFLTERALYVLMWDASRFMDKITS---QELAHHLNEWLVTLHLRAPHSTVLLCGTHKDKCVPSNILTKSLAWLKRSRSIEAILEDVEYSIKDKNMQWKNEQSQGKHSTSVRGLKLECGIQLISSSPTCYCDNGLADFLQRLKICGDSTRWLIPPSWRLALVVLDAVRDGIDPVKAARCHINPNDPLPVASSSKI--------CWVPCVQLQISWKSVLNPLELDLPPEVRP---DDPEFTLQSVIDMRERAGSLLK--HPRGVFLDVEDFALSLAPILNHKTQQNDSRGVAVFADRKLDSQWKLNARTRLVRMGILEREFALFLWKE--DGVLPEQTFD----VLVKLGILLPLPRRDEQGVYRPCDWESTAAWD---CIEEYLVLMRLP--LNPTHKTLARFNAFERLRGDWGVVVRWEFKVGSTPHGLVERLVASCHAIGNVVRDTCWRRGACFVCHK-ASFDAAGGSFALALKFTQSSTSNIPTTGTLVVQAFGNRKGRALWGALRFVISAAWDIFQEFPGLRWEAWVECPKHHGQLQHYLACVDDSEEMSPGRSIIRPYESPI----CGCTEGVASSLGKVLRR 2490
+G E A L S C L NPW PP VVEKG+ A++ Y ++ K + + L KVV +G S +GKTSL+ SI G+G L TVG VS GI T ++ YD AGQV+YYG+HQ FLT RALY+L+WD R K + + + WL LHLRAP STV+L D + T ++ VE + +W+ ++G ST + ++ + SS +C GL + + R+ + +PP+W LAL LDA+RD DP +A R D L + S K+ + L WK V+ +E +L + DP+ ++ + + E AG +L+ + GVFLDV + +L PIL+HK K+ Q R LV GIL FA LW + + +PE+ D V+V LG+ LPL E P + A ++ LV+MRLP H+ + R D V + W F P+GLVER++ASCHA+G V CWR GA F A+ D + + +++ S+ N L ++ FG + +W ALR+V S+ +I +++PG+ WE W +C + H ++ S++ S G ++ + C C + L VL R
Sbjct: 161 VGEAEHALRWLTRRSECLIVLGGNPWIMPPEGVVEKGLPAVESYLLDVRKAEEAGAEVKTLKLLKVVLVGSSQAGKTSLVNSIVEGRG-------LPTVGTPAEVSTVGIELLRHNLQGTAVEFYDCAGQVDYYGMHQNFLTRRALYLLVWDVLRCHGKTDDDLDEVIFQDIMRWLYVLHLRAPGSTVILVANKCDGSIEDFTGTAAV---------------VEERVAVLRKEWRK--ARGFSSTR---MDMDMTVLERSSLVSCLDGVGLQEMIDRIA-AQSAASMRVPPAWGLALTFLDALRDSRDPQQACR------DCLSLGSRPKVGADREPGRSFFTENSLVEQWKGVVQNVEGELRSDAEKMAVSDPDGAIEGALWISEFAGQVLRVANGDGVFLDVVWLSTALKPILDHKLVH------------KVFPQHFAGMRNELVHNGILRIAFAEHLWSDVMEITVPEEVLDALCRVIVNLGVALPL----EPASLLPGSGRALATGRPNISRQDMLVIMRLPETCGAEHELQELISDQMRRHSDREVTLMWRFDSAGPPYGLVERVIASCHAVGVVEMGLCWRYGAVFQSRAMATSDGSDRLYTFVVRY-DSAVGN--ERRILSMRMFGPLQDNRVWAALRWVASSVVNISKDWPGVLWEGWPQCARRHRNRTYFAT----SDKASIGDFLLADAATGATRRGCDCLAVEGTVLRLVLER 829
BLAST of mRNA_H-elongata_contig200.5631.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI) HSP 1 Score: 249 bits (635), Expect = 9.150e-64 Identity = 226/740 (30.54%), Postives = 338/740 (45.68%), Query Frame = 1
Query: 436 LGMGEDARTILGLLSRCTH----YLENNPWECPPAPVVEKGIDAMKKYY---------GELVKTKPVLIDLRKVVFIGHSGSGKTSLIKSI--KAGKGHLALEEELETVGVSVHGINFKNERRGDTDMKLYDLAGQVEYYGLHQLFLTERALYVLMWDASRF-------MDKITSQELAHHLNEWLVTLHLRAPHSTVLLCGTHKDKCVPSNILTKSLAWLKRSRSIEAILEDVEYSIKDKNMQWKNEQSQGKHSTSVRGLKLECGIQLISSSPTCYCDNGLADFLQRLKICGDSTRWLIPPSWRLALVVLDAVRDGIDPVKAARCHINPNDPLPVASSSKICWVPCVQLQISWKSVLNPL--ELDLPPE-VRPDDPEFTLQSVIDMRERAGSLLK--HPRGVFLDVEDFALSLAPILNHKTQQNDSRGVAVFADRKLDSQWKLNARTRLVRMGILEREFALFLWKEDGVLP--EQTFD----VLVKLGILLPLPRRDEQGVYRPCDWESTAAWDCIEEYLVLMRLPLNPTHKTLARFNAFER----LRGDWGVVVRWEFKVGSTPHGLVERLVASCHAIGNVVRDTCWRRGACFVCHKASFDAA-GGSFALALKFTQSSTSNIPTTGTLVVQAFGNRKGRALWGALRFVISAAWDIFQEFPGLRWEAWVECPKH-HGQLQHYLACVDDSEEMSPGRSIIRPYESP-ICGC--TEGVASSLGKVLRRSPTWDPSHLDDVF 2529
LG E A + L + L++NPW PP +V +G+ A++KY G VKT VL KVV IG G+GKTSL+ SI + G + EE+ TVG+ + ++ +R ++ YD AGQV+YYG+HQ FLT RALY+L+WD SR +DK+ S+++ +WL LHLR P S VLL D + + T VE S + + +W+ + S V L + L+S C GL++ + R+ G +T ++PPSW LAL LDA+RD DP A R ++ + V ++ ++ L W + + EL P E + D ++ + + E AG +L+ H +FLDV + +L PIL+HK + + F +L + + LV G+L +FA +LW + P E+ D VL LG+ LPL R +E+ D + ++ LV+MRLP R G V ++W F HGLVER++ASCH +G+V CWR GA F + + D ++ +++ + S L V FG LW ALR+V S+ + +PG+RWE C H G++ Y ++ P + P +P +C C TEG A L VL R T + DD F
Sbjct: 318 LGQAEQALQFVARLGQLASGQNLRLQDNPWVMPPEGIVNEGLPAVEKYLRDVREAEEAGAEVKTLNVL----KVVLIGSPGAGKTSLLNSIVNERGSRTVGTSEEVSTVGIELR----RHHQRNGRIVEFYDCAGQVDYYGMHQTFLTRRALYLLVWDVSRCHGKESNDLDKVVSEDIM----KWLYALHLRVPGSAVLLVANKCDGSLQEFVGTAGA---------------VESSARRQLQEWQG----NRKSPGVTKLTILQQPSLVS----CDDGGGLSEVIARVDAQG-ATSIVVPPSWGLALAFLDALRDSRDPEPATRRFLHLDFDAEVGAAQGSSFMTESTLFQRWNDTVKSVAGELTSPAERMAVSDHHGAMEGALWISEFAGHILRVAHSDVIFLDVVWLSAALKPILSHKLESH------FFPRSELTAM-----KDELVDNGVLRLKFAEYLWDLEMEAPPSEEVMDALCGVLHSLGVALPLGR-EERHTASAIDPAAAHGQIGRQDMLVIMRLPDTCEENIQGELQELVRDLSERHGGNEVTLKWRFDGAGASHGLVERVIASCHEVGSVRSGLCWRYGAVFQSYARADDGGLNWLYSFVIRYDEEVGSG---ERVLAVTMFGPTAEDRLWAALRWVASSVVNTSTGWPGVRWEGGPACAIHARGRM--YFKTPIEARIGDPILTDPDPRTAPNVCDCYTTEGNAMRL--VLERLGTIIDTQKDDPF 1002
BLAST of mRNA_H-elongata_contig200.5631.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI) HSP 1 Score: 187 bits (475), Expect = 3.740e-44 Identity = 196/728 (26.92%), Postives = 302/728 (41.48%), Query Frame = 1
Query: 463 ILGLLSRCTHYLENNPWECPPAPVVEKGIDAMKKYYGELVKT--KPVLIDLRKVVFIGHSGSGKTSLIKSIKAGKGHLALEEELETVGVSVHGINFKNERRGDTDMKLYDLAGQVEYYGLHQLFLTERALYVLMWDASRFMDK----ITSQELAHHLN--------EWLVTLHLRAPHSTVLLCGTHKDKCVPSNILTKSLAWLKRSRSIEAILEDVEYSIKDKNMQWKNEQSQGKHSTSVRGLKLECGIQLISSSPTCYCDNGLADFLQRLKICGDST---RW-----------------------------LIPPSWRLALVVLDAVRDGIDPVKAARCHINPND---------PLPVASSSKICWVPCVQLQISWKSVLNPLELDLPPEVRPDDPEFTLQSVIDMRERAGSLLKHPRGVFLDVEDFALSLAPILNHKTQQNDSRGVAVFADR--KLDSQWKLNARTRLVRMGILEREFALFLWKEDGVLPEQTFDVLVKLGILLPLPRRDEQGVYRPCDWESTAAWDCIEEYLVLMRLPLNPTHKTLARFNAFERLRGDWGVV--VRWEFKVGSTPHGLVERLVASCHAIGNVVRDTCWRRGACFVCHKASFDAAGGSFALALKFTQSSTSNIPTTGTLVVQAFGNRKGRALWGALRFVISAAWDIFQEFPGLRWEAWVECPKHHGQLQHYLACVDDSEEMSPGRSIIRPYESPICGCTEGVASS 2469
+L LSR + NPW+ PP VV KGI A+++Y+ +L PV + KVV +G G+GKTSL +S++ G+ E TV + V ++ +++YD AGQV Y GL Q+FL+ RA+ +L+ D F + I S +L L+ +WL +L R P S V++ T D L + R AI E +E W + + +E G+ L S P ++G A +R DST W ++P SW +AL VLDA+ G +PV++A+ ++ + P + + + L W V+ LE D V+PD L+ + +RE GSL++H VFLDV A L P+LNH+ ++ RG D L + + RL G+LE A LW DG L L LG+ PL +G+ +VL+RL + F R D V V+W+ +G P G +E+++ C +G + T WR G V A +FAL ++++ + ++ +G+ A W AL F IS + EFPGLRW A ++CP+H ++M ++ RP + + G T + S
Sbjct: 234 LLATLSRLGFLVHENPWQEPPEAVVSKGISAVQEYFTDLFAEGIAPVGRKMIKVVLVGQEGAGKTSLRQSLRTGRPTPTSGSEESTVQIDVEQMDVNG-----VTLRVYDCAGQVAYTGLLQMFLSPRAVSLLVCDLGAFGQRDGTLIHSDQLKKDLSKLQELRVCDWLRSLSFRIPDSDVVVVATKCD-------LAAGMGTDAAGRIEGAIGEWLE--------SWSG--------AGMNAVHVEDGVSLTSCFPPTPNEDGGAALGKRKSPDEDSTWACDWREGVSVESQPSLLHRVMYNSKGNVRGASLVLPRSWNIALEVLDALGSGRNPVESAQQNVLASGGPKGATEVVPAVYQRNQGVGGLTRADLSTKWNEVVAALEGDGVSVVKPD---HALEGALLIREHEGSLVRHETYVFLDVTWLAQILKPLLNHRDDEDPLRGDVSLGDTGITLKEDKHIASWNRLKGHGVLEPSLARVLWP-DG-LSNYVLPALDSLGLTYPLDDDPAEGL------------------VVLLRLDEKRPEDVGKELDDFRR---DHTAVLSVKWKVFLG-VPPGAIEKMLTRCCRLGTL--RTFWRFGV-LVQGSLGGGIAARTFALVVEYSHDKCE-------VDMKVYGSISTAAPWAALSFGISVFQAMCSEFPGLRWRAALKCPQHE-------------QDMQISKAATRPGDKSLFGATCSLCDS 883
BLAST of mRNA_H-elongata_contig200.5631.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI) HSP 1 Score: 183 bits (464), Expect = 7.170e-43 Identity = 184/674 (27.30%), Postives = 289/674 (42.88%), Query Frame = 1
Query: 463 ILGLLSRCTHYLENNPWECPPAPVVEKGIDAMKKYYGELVKT--KPVLIDLRKVVFIGHSGSGKTSLIKSIKAGKGHLALEEELETVGVSVHGINFKNERRGDTDMKLYDLAGQVEYYGLHQLFLTERALYVLMWDASRFMDK----ITSQELAHHLN--------EWLVTLHLRAPHSTVLLCGTHKDKCVPSNILTKSLA--------WLKRSRSIEAILEDVEYSIKDKNMQWKNEQSQGKHSTSVRGLKLECGIQLISSSPTCYCDNGLADFLQRL------KICGDSTRWLIPPSWRLALVVLDAVRDGIDPVKAARCHINPND---------PLPVASSSKICWVPCVQLQISWKSVLNPLELDLPPEVRPDDPEFTLQSVIDMRERAGSLLKHPRGVFLDVEDFALSLAPILNHKTQQNDSRGVAVFADR--KLDSQWKLNARTRLVRMGILEREFALFLWKEDGVLPEQTFDVLVKLGILLPLPRRDEQGVYRPCDWESTAAWDCIEEYLVLMRLPLNPTHKTLARFNAFERLRGDWGVV--VRWEFKVGSTPHGLVERLVASCHAIGNVVRDTCWRRGACFVCHKASFDAAGGSFALALKFTQSSTSNIPTTGTLVVQAFGNRKGRALWGALRFVISAAWDIFQEFPGLRWEAWVECPKHHGQLQ 2361
+L LS+ ++ NPW+ PP VV KGI A+++Y+ +L PV + KV+ +G G+GKTSL +S++ G+ E TV + V ++ +++YD AGQV Y GL Q+FL+ RA+ +L+ D F + S +L LN +WL +L R P S V++ T D + + + + A W++ + VE + + G + R E S C L R+ ++ G S ++P SW + L VLDA+ G DPV++A+ + + P + + + L W V+ LE D V PD L+ + +RE GSL++H VFLDV A L P+LNH+ ++ RG D L + + RL G+LE E A LW DG L L LG+ PL +G+ +VL+RL + F R D V V+W+ +G P G +E+++ C +G + T WR G V A +FAL ++++ T + ++ +G+ + A W AL + IS + EFPGLRW A ++CP+H +Q
Sbjct: 198 LLATLSQLGLHVHTNPWQEPPEAVVSKGIPAVREYFTDLFAEGIAPVGRKMIKVILVGQEGAGKTSLRQSLRTGRPTPTSGPEESTVQIDVEQMDVNG-----VTLRVYDCAGQVAYTGLLQMFLSPRAVSLLVCDTGAFGQRDGSLTDSDQLKKDLNKLQELRVCDWLRSLSFRIPDSDVVMVATKCD--LAAGMAADAAARMAGGAGNWIESWSDAQMTAVRVEDGVNLTSCFASTPNEDGGAALGTRESPEEQSTWACDWSDG-MCVESQPSLLHRVMYNNKGELRGASL--VLPRSWNIGLGVLDALGSGRDPVESAQQMVLASGGPKGAAEVVPAVYQRNQGVGGLTRADLSTKWNDVVAALEEDGVSIVNPD---HALEGALLIREHEGSLVRHETYVFLDVTWLAQILKPLLNHRDDEDPLRGDVSLGDTGITLKEDKHIASWNRLKGHGVLEPELAGVLWP-DG-LSNYVLPTLDSLGLTYPLDDDPAEGL------------------VVLLRLDEKRPEDVGKELDDFRR---DHTAVLSVKWKIFLG-VPPGAIEKMLTRCCRLGTL--RTFWRFGV-LVQGSLGGGMAAKTFALLIEYSHD-------TCEVDMEVYGSIRTAAPWAALSYGISVFQAMCSEFPGLRWRASLKCPQHEQDMQ 824
BLAST of mRNA_H-elongata_contig200.5631.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI) HSP 1 Score: 168 bits (426), Expect = 2.120e-38 Identity = 182/677 (26.88%), Postives = 285/677 (42.10%), Query Frame = 1
Query: 496 LENNPWECPPAPVVEKGIDAMKKYYGELVK------TKPVLIDLRKVVFIGHSGSGKTSLIKSIKAGKGHLALEEELETVGVSVHGINFKNERRGDTDMKLYDLAGQVEYYGLHQLFLTERALYVLMWDASRF--MDKITSQELAHHLNEWLVTLHLRAPHSTVLLCGTHKDKCVPSNILTKSLAWLKRSRSIEAILEDVEYSIKDKNMQWKNEQSQGKHSTSVRGLKLECGIQLISSSPTCY--------------CDNGLADFLQRLKICG-DSTRWL---IPPSWRLALVVLDAVRDGIDPVKAARCHINPNDPLPVASSSKICWVPCVQLQISWKSVLNPLELDLPPEVRPDDPEFTLQSVIDMRERAGSLLKHPRGVFLDVEDFALSLAPILNHKTQQNDSRGVAVFADRKLDSQWKLNARTRLVRMGILEREFALFLWKEDGVLPEQTFDVLVKLGILLPLPRRDEQGVYRPCDWESTAAWDCIEEYLVLMRLPLN-PTHKTLARFNAFERLRGDWGVVVRWEFKVGSTPHGLVERLVASCHAIGNVVRDTCWRRGACFVCHKASFDAAGGSFALALKFTQSSTSNIPTTGTLVVQAFGNRKGRALWGALRFVISAAWDIFQEFPGLRWEAWVECPKHHGQLQHYLACVDDSEEMSPGRSII-RPYESPIC 2442
L NPWE PP +V G+ A++ YY + K T+P+ KVV IG GKTSL +SI G + +E+ +VH ++ ++ + ++++D AGQV YYGL QLFLT RA+Y+L+WDA++ MD + ++LA + WL L R P++ V+L G D+ V R+ + +DVE + +W + H GL LE G+ L+S + +C CD R+ D R + +PPS+RLAL +L+ + R + L+ W + + L P P E + I +R+ G L+++ VFLDVE FA L P+ +H+ DS G ++ + L + RL + E + A LW + L L G+ PLP G+ ++L+R+ P ++ R A + + D + V F +G P G VERL+A C +G WR GA V + A G F+L+L +++ L V+ G + W AL V+S + EFPGL E CP+H + + + PG ++ + Y P+C
Sbjct: 410 LSRNPWEHPPEAIVAGGVQAVRGYYEAMFKGGTTAVTRPL-----KVVIIGKETVGKTSLRRSITTGGPCMTQNGGVES---TVH-VDVEDHKVDGHPIRIFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLNLEDLA--IAPWLRYLTFRVPNANVILVGNKWDRVV---------------RTRGTVADDVECESR----RWLKSWMEKAHGHQPHGLSLEDGVSLVSCAQSCLGVSAPAFGGGTGWPCDKSTPGLFHRMIYDPVDDKRTVTMHLPPSYRLALEMLEELASSSRRKAEQRTR----------------GITRADLEEKWHAKVAELNGAGTPVAAP---EAAMPGAILIRKWEGGLVEYGNYVFLDVEWFATVLDPLFSHR---RDSYGDIDLGGIRVTN---LASLRRLDNEHVFEPQLAEELWTPE--LAPHLLLALKSAGLTFPLPNDPNGGL------------------VILLRMDTTRPPEYSIRREEANQARKYDLTLSVACSFSLGLPP-GFVERLLARCCHLGYPY--PFWRYGALIVGNGAE----KGLFSLSLDYSEHDN-------MLKVEVLGGGEEVHAWAALSKVLSVMIKMLSEFPGLPCEPIFFCPQHKTKGMPIR-----TTDAPPGSGLVEKGYFCPLC 992
BLAST of mRNA_H-elongata_contig200.5631.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE) HSP 1 Score: 161 bits (408), Expect = 2.040e-36 Identity = 187/661 (28.29%), Postives = 287/661 (43.42%), Query Frame = 1
Query: 496 LENNPWECPPAPVVEKGIDAMKKYYGELVKTKPVLI--DLRKVVFIGHSGSGKTSLIKSIKAGKGHLALE-EELETVGVSVHGINFKNERRGDTDMKLYDLAGQVEYYGLHQLFLTERALYVLMWDASRFMDKITSQ------ELAHHLNE-----WLVTLHLRAPHSTVLLCGTHKDKC------VPSNILTKSLAWLKRSRSIEAILEDVEY-------SIKDKNMQWKNEQSQGKHSTSVRGLKLECGIQLISSSPTCYCDNGLADFLQRLKICGDS-----TRWLIPPSWRLALVVLDAVRDGIDPVKAA-RCHINPN--DPLPVASSSKICW--VPCVQLQISWKSVLNPLELDLPPEVRPDDPEFTLQSVIDMRERAGSLLKHPRGVFLDVEDFALSLAPILNHKTQQND----SRGVAVFADRKLDSQWKLNARTRLVRMGILEREFALFLWKEDGVLPEQTFDVLVKLGILLPLPRRDEQGVYRPCDWESTAAWDCIEEYLVLMRLPLNPTHKTLARFNAFERLRGDWGVVVRWEFKVGSTPHGLVERLVASCHAIGNVVRDTCWRRGACFVCHKASFDA---AGGSFALALKFTQSSTSNIPTTGTLVVQAFGNRKGRALWGALRFVISAAWDIFQEFPGLRWEAWVECPKH 2346
L NPW PP P+V KG A++ Y+ +L +P I + KVV +G G+GKTSL +S+KA + E +E TV V + + + +++YD AGQV Y GL Q+FLT RA+ VL+ +A +F + S+ E L E WL ++ R P++ V+L T D + + + WL S + L+ V S + + E S G H ++G + +P+ L RL D T+ ++P SW +AL VL+A+ G DPV+ R +P+ D A + + L I W+ ++ LE V + + L+ + +RE GSL+++ + +FLDV A L P+LNHK Q+ S G A LD + + RL G+LE A +W L E L LG+ PL +G+ +VL+RL + + F L + W+ +G P G +E+++ C +G V T WR G + H + G FA+ L++ SST N L Q FG+ A W L +V+SA + +FPGLRW + CP+H
Sbjct: 155 LGTNPWVEPPEPIVVKGPKAVRGYFEDLY-AEPCRIKRSIVKVVLVGQEGAGKTSLRQSMKANEATPTGEWKEESTVFADVEAMELEG-----SSVRVYDCAGQVAYTGLLQMFLTPRAVCVLVCNAGKFGQQTRSESNDQVGEDCRKLEELRVCDWLRSISRRVPNNDVILVATKCDLAGGNAGKIGARMEHACRRWL--SSWVRNGLQPVRLEPCVSLTSCFETGVGEHGESSTGSHE--LKGGWACDWRDMADGNPS-------PSLLHRLVNKPDGRGLRGTQMVLPRSWDIALTVLEALEHGRDPVEVVLRKSPDPDRGDATETARGETAMYQGITVEDLSIKWQETVDGLERS---GVTVTNAKNALEGALLIREFDGSLIRYEKFIFLDVVWLAKILKPLLNHKDQETFDGLVSLGDTGDARITLDDPSDIASWGRLKSQGVLEPRLAYAIWPNG--LSEYVLPALAFLGLTFPLEDDPAKGL------------------VVLLRLKPDRPESVGHAIDTF-CLDHTPALSASWKIFLG-VPPGAIEKVLTRCCGLGGV--RTFWRYGV--LVHGGLGEVHVGRRGIFAVVLEY--SSTDN-----ELAAQIFGDISTPAPWVVLSYVMSAVSLMLLDFPGLRWRGSLTCPQH 762
BLAST of mRNA_H-elongata_contig200.5631.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI) HSP 1 Score: 160 bits (406), Expect = 5.660e-36 Identity = 188/706 (26.63%), Postives = 289/706 (40.93%), Query Frame = 1
Query: 496 LENNPWECPPAPVVEKGIDAMKKYYGELVK------TKPVLIDLRKVVFIGHSGSGKTSLIKSIKAGKGHLALEEELETVGVSVHGINFKNERRGDTDMKLYDLAGQVEYYGLHQLFLTERALYVLMWDASRF--MDKITSQELAHHLNEWLVTLHLRAPHSTVLLCGTHKDKCVPSNILTKSLAWLKRSRSIEAILEDVEYSIKDKNMQWKNEQSQGKHSTSVRGLKLECGIQLIS--------SSPTCY------CDNGLADFLQRLKICG-DSTRWL---IPPSWRLALVVLDAVRDGIDPVKAARCHINPNDPLPVASSSKICWVPCVQLQISWKSVLNPLELDLPPEVRPDDPEFTLQSVIDMRERAGSLLKHPRGVFLDVEDFALSLAPILNHKTQQNDSRGVAVFADRKLDSQWKLNARTRLVRMGILEREFALFLWKEDGVLPEQTFDVLVKLGILLPLPRRDEQGVYRPCDWESTAAWDCIEEYLVLMRLPLNPTHKTLARFNAFERLRGDWGVVVRWEFKVGSTPHGLVERLVASCHAIGNVVRDTCWRRGACFVCHKASFDAAGGSFALALKFTQSSTSNIPTTGTLVVQAFGNRKGRALWGALRFVISAAWDIFQEFPGLRWEAWVECPKHHGQLQHYLACVDDSEEMSPGRSIIRP-YESPICGCTEGVASSLGKVLRRSPTWDPSHLDDVFK 2532
L NPWE PP +V G+ A++ YY + K T+P+ KVV IG GKTSL +SI G + +E+ +VH ++ ++ + ++++D AGQV YYGL QLFLT RA+Y+L+WDA++ MD + ++LA + WL L R P + V+L G D+ V R+ + +DVE + +W + H GL LE G+ L+S S+P CD R+ D R + +PPS+RLAL +L+ + R + L+ W + + L P P E + I +R+ G L+++ VFLDVE FA L P+ +H+ DS G ++ + L + RL + E + A LW + L L G+ PLP G+ ++T EY + L HK D + V F +G P G VERL+A C +G WR GA V + A G F+L++++++ L ++ FG + W AL V+S + EFPGL E CP+H + + + PG ++ Y +C E L L+ D LD+ +
Sbjct: 503 LSRNPWEHPPEAIVAGGVQAVRGYYDAMFKGGTTAVTRPL-----KVVIIGKETVGKTSLRRSITTGGPCMTQNGGVES---TVH-VDVEDHKVDGHPIRIFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLNLEDLA--IAPWLRYLTFRVPDANVILVGNKWDRVV---------------RTRGTVADDVECESR----RWLKSWMEKAHGHQPHGLSLEDGVSLVSCAQSGLGVSAPAFGGGTGWPCDKSTPGLFHRMIYDPVDDKRTVTMHLPPSYRLALEMLEELASSSRRKAEQRTR----------------GITRADLEEKWHAKVAELNGAGTPVAAP---EAAMPGAILIRKWEGGLVEYGNYVFLDVEWFATVLDPLFSHR---RDSYGDIDLGGIRVTN---LASLRRLDNEHVFEPQLAEELWTPE--LAPHLLLALKSAGLTFPLPNDPNGGLVILLRMDTTRP----PEY----GIKLEQVHKAS---------EADLRLTVACSFSLGLPP-GFVERLLARCCHMGYPF--PFWRYGALIVGNGAE----KGLFSLSVEYSEEDK-------ILALEVFGGCEEVHAWAALSKVLSVMIKMLSEFPGLPCELMFFCPQHKTKGMPIR-----TTDGRPGSCLVEESYFCQLCQDREAGIDLLAAALQVVEFSDEKFLDEPLR 1115
BLAST of mRNA_H-elongata_contig200.5631.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 152 bits (384), Expect = 2.230e-33 Identity = 171/684 (25.00%), Postives = 272/684 (39.77%), Query Frame = 1
Query: 496 LENNPWECPPAPVVEKGIDAMKKYYGELVKTKPVLIDLR--KVVFIGHSGSGKTSLIKSIKAGKGHLALE-EELETVGVSVHGINFKNERRGDTDMKLYDLAGQVEYYGLHQLFLTERALYVLMWDASRFMDKITSQELAHHLNE------------WLVTLHLRAPHSTVLLCGTHKDKC------VPSNILTKSLAWLKRSRSIEAILEDVEYSIKDKNMQWKNEQSQGKHSTSVRGLKLECGIQLISSSPTCYCDNGLADFLQRLKICGDSTRW------------------------------LIPPSWRLALVVLDAVRDGIDPVKAARCHINPNDPLPVASSSKIC------WVPCVQLQISWKSVLNPLELDLPPEVRPDDPEFTLQSVIDMRERAGSLLKHPRGVFLDVEDFALSLAPILNHKTQQNDSRGVAVFADR-----KLDSQWKLNARTRLVRMGILEREFALFLWKEDGVLPEQTFDVLVKLGILLPLPRRDEQGVYRPCDWESTAAWDCIEEYLVLMRLPLNPTHKTLARFNAF-----ERLRGDWGVVVRWEFKVGSTPHGLVERLVASCHAIGNVVRDTCWRRGACFVCHKASFDAAGGSFALALKFTQSSTSNIPTTGTLVVQAFGNRKGRALWGALRFVISAAWDIFQEFPGLRWEAWVECPKH 2346
L++NPW PP +V KG ++ Y+ +L +P + K++ +G G+GKTSL KS+KA + E +E TV V + + + +++YD AGQV Y GL Q+FLT RA+ V++ +A F + + E + E WL ++ R P + V+L T D + I S WL W + ++ ++LE G+ L S T C++G + G + W +IP SW +AL VL+A+ G DPV+ + D A+ + C + L+ W+ L ++ + + L+ + +RE GSL++H VFLDV A L P+LNHK ++ G+ D L+ + + RL G+LE A LW L E + LG+ PL G+ +VL+RL + + F LR W + + P G +E+++ C ++G V T WR G V G FA+ L+++ P+ L Q FG+ A W AL +V+SA + +FPGLR ++CP+H
Sbjct: 298 LDDNPWAEPPESIVAKGAKNIRGYFEDLY-AEPCRVQRSSVKIILVGQEGAGKTSLRKSMKAKEATPTGEWKEESTVFADVERMELEG-----SSIRVYDCAGQVAYTGLLQMFLTPRAVCVIVCNAESFGQQRGTCETGGQVKEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDSVGGNAGEIGKRIELASRMWL---------------------ASWVR--------SGMQPVRLEPGVCLTSCCTTNVCEDGERSTRNQAMEGGWTCDWRDGKDDNPSPSLLHRLVNKPDGGGLRGAQMVIPRSWDIALTVLEALERGRDPVEMVVEDLGDADGGD-ATGTAACKTGLYHGITAEDLRTKWQEAAVGLAGR---DITVTNADNALEGALAIREFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFD-GLVNLGDTGDTRVTLEDPSDIASWGRLKNEGVLEPRLARKLWPNG--LSEYVIPTIASLGLTFPLENDPAGGL------------------VVLLRLEHDRPELVGKVIDTFCLDQTPALRASWKIFL-------GVPAGAIEKVLTRCCSLGGV--QTFWRSGV-LVHGGVGEQDRSGIFAVVLEYS-------PSDNELTAQIFGDISTPAPWVALSYVVSAVSLMLLDFPGLRSRGSLKCPQH 904
BLAST of mRNA_H-elongata_contig200.5631.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI) HSP 1 Score: 152 bits (383), Expect = 2.450e-33 Identity = 179/647 (27.67%), Postives = 269/647 (41.58%), Query Frame = 1
Query: 505 NPWECPPAPVVEKGIDAMKKYY------GELVKTKPVLIDLRKVVFIGHSGSGKTSLIKSIKAGKGHLAL---EEELETVGVSVHGINFKNERRGDTDMKLYDLAGQVEYYGLHQLFLTERALYVLMWDASRF--MDKITSQELAHHLNEWLVTLHLRAPHSTVLLCGTHKDKCVPSNILTKSLAWLKRSRSIEAILEDVEYSIKDKNMQWKNEQSQGKHSTSVRGLKLECGIQLISSSPTCY--------------CDNGLADFLQRLKICG-DSTRWL---IPPSWRLALVVLDAVRDGIDPVKAARCHINPNDPLPVASSSKICWVPCVQLQISWKSVLNPLELDLPPEVRPDDPEFTLQSVIDMRERAGSLLKHPRGVFLDVEDFALSLAPILNHKTQQN---DSRGVAVFADRKLDSQWKLNARTRLVRMGILEREFALFLWKEDGVLPEQTFDVLVKLGILLPLPRRDEQGVYRPCDWESTAAWDCIEEYLVLMRLPLNPTHKTLARFNAFERL-RGDWGVVVRWEFKVGSTPHGLVERLVASCHAIGNVVRDTCWRRGACFVCHKASFDAAGGSFALALKFTQSSTSNIPTTGTLVVQAFGNRKGRALWGALRFVISAAWDIFQEFPGLRWEAWVECPKH 2346
NPWE PP +V GI A++ Y+ G T+P+ KVV +G GKTSL +SIK GK + EE V V H ++ ++++D AGQV YYGL QLFLT RA+Y+L+WDA++ M+ + ++LA + WL L R P ++V+L G D+ V R+R A+ DVE+ + QW + RG+ LE G+ L+S + + CD R+ D TR + +P S+RLAL +L+ + A C + + + I L+ W++ + + PD + I +R+ G L+++ VFLDVE FA L P+ HK D G+ V LD RL +LE + A LW VL L G+ PL G+ ++L+R+ P + ++ + D +VV F++G P G VERL+A C +G + WR GA V A F+L+L+++++ L V+ G W AL V+S + EFPGL CP H
Sbjct: 341 NPWESPPDAIVVGGIPAVRAYFEAIYMGGTTAVTRPL-----KVVIVGKETVGKTSLRRSIKTGKPCMTRGGGEESTVHVDVEDHDLDGH-------PIRMFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMEGLNLEDLA--IAPWLRHLTFRVPDASVILVGNKCDRVV-------------RTRRT-AVAVDVEHESR----QWLESWIEIARGHQPRGISLEDGVSLVSCAASGVGAVAPSFGRRSGWPCDKSTPGLFHRIIYDSTDDTRVVTMRLPESYRLALEMLEEL---------ASCSRSKTEQQTRGITRAI-------LEEKWQAKVAEMNRAGTSVAAPD---AAMAGAILIRKWEGGLVEYGSYVFLDVEWFATVLDPLFCHKRDSYGKIDLGGIRVMDVDSLD---------RLDEEHVLEPQLAEDLW--GPVLAPHLLLALKSAGLTFPLSNDSNGGL------------------VILLRMDTKPPPDYGIKLKEKDQANKFDLRLVVECSFRLGLPP-GFVERLLARCCHLG--LPYPFWRYGALIV----GKGAEERMFSLSLEYSEARK-------ILTVEVSGGHTEVFAWAALSKVLSVTIKMLLEFPGLPCRTTFFCPLH 893 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200.5631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig200.5631.1 >prot_H-elongata_contig200.5631.1 ID=prot_H-elongata_contig200.5631.1|Name=mRNA_H-elongata_contig200.5631.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=840bp MLYLFSNQLSGLGMGEDARTILGLLSRCTHYLENNPWECPPAPVVEKGIDback to top mRNA from alignment at H-elongata_contig200:10906..23378- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig200.5631.1 ID=mRNA_H-elongata_contig200.5631.1|Name=mRNA_H-elongata_contig200.5631.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=12473bp|location=Sequence derived from alignment at H-elongata_contig200:10906..23378- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig200:10906..23378- >mRNA_H-elongata_contig200.5631.1 ID=mRNA_H-elongata_contig200.5631.1|Name=mRNA_H-elongata_contig200.5631.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5040bp|location=Sequence derived from alignment at H-elongata_contig200:10906..23378- (Himanthalia elongata Himel1 dioecious)back to top |