mRNA_H-elongata_contig199994.5630.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199994.5630.1
Unique NamemRNA_H-elongata_contig199994.5630.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig199994.5630.1 vs. uniprot
Match: D8LI08_ECTSI (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI08_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 4.250e-40
Identity = 65/86 (75.58%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    1 RADPREHVIKGSVIAANQTEFPHSIDSFPPLLNSEVYYNGTSKRFWWNQNAEAVCVYAPVPTGFDPEKVEFVAKSRHVSFKVDGEE 258
            R + +E +IKGSVIAANQT FP+SIDSFPPL NSEVYYNGTS+R+WWNQNA+AV VY PVP  FD EKVEFVAK+RH+S K DGEE
Sbjct:  146 RVEAKEQLIKGSVIAANQTVFPYSIDSFPPLTNSEVYYNGTSERYWWNQNADAVSVYVPVPKDFDAEKVEFVAKTRHISLKFDGEE 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199994.5630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI08_ECTSI4.250e-4075.58CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199994contigH-elongata_contig199994:452..976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-18_001280.1
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930126.8761363-CDS-H-elongata_contig199994:451..5561622930126.8761363-CDS-H-elongata_contig199994:451..556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199994 452..556 +
1691679291.283445-CDS-H-elongata_contig199994:451..5561691679291.283445-CDS-H-elongata_contig199994:451..556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199994 452..556 +
1622930126.8916621-CDS-H-elongata_contig199994:823..9761622930126.8916621-CDS-H-elongata_contig199994:823..976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199994 824..976 +
1691679291.2927153-CDS-H-elongata_contig199994:823..9761691679291.2927153-CDS-H-elongata_contig199994:823..976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199994 824..976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199994.5630.1prot_H-elongata_contig199994.5630.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199994 452..976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199994.5630.1

>prot_H-elongata_contig199994.5630.1 ID=prot_H-elongata_contig199994.5630.1|Name=mRNA_H-elongata_contig199994.5630.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
RADPREHVIKGSVIAANQTEFPHSIDSFPPLLNSEVYYNGTSKRFWWNQN
AEAVCVYAPVPTGFDPEKVEFVAKSRHVSFKVDGEE
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mRNA from alignment at H-elongata_contig199994:452..976+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199994.5630.1 ID=mRNA_H-elongata_contig199994.5630.1|Name=mRNA_H-elongata_contig199994.5630.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=525bp|location=Sequence derived from alignment at H-elongata_contig199994:452..976+ (Himanthalia elongata Himel1 dioecious)
AGAGCTGATCCTAGGGAGCACGTGATCAAGGGGTCGGTGATCGCGGCGAA
TCAAACCGAATTCCCCCACTCGATCGACAGCTTCCCCCCGCTCCTGAACA
GCGAGGTGAGGACCCTGCTTGATCGTGCAATCCGCCAGGACAATTTGTAC
GACAATCTTCTGCGTGCTAGCTTGACTGCGTCTTCCCTGCCGCGTTTGCC
GCTCTTCTCGTGCGTCTTTGCAAAAATTACTTTTTCAGATCTACTCTCAA
TCGATAGCGCCGACTAGGAATAGCTCGAACGAGTACTTGAAGAGCGATCG
ATCCGTCCAATCAATCGGGCCCGCCAAGCCCTACGATCGCCACTGAAAAC
GTTTAGATGCTTGCGCCCTCAGGTTTACTACAACGGCACCTCCAAGAGGT
TCTGGTGGAACCAAAACGCAGAGGCCGTGTGCGTCTATGCTCCAGTTCCT
ACGGGTTTCGATCCAGAGAAGGTGGAATTCGTGGCCAAGTCGAGACACGT
CTCGTTCAAGGTCGACGGCGAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig199994:452..976+

>mRNA_H-elongata_contig199994.5630.1 ID=mRNA_H-elongata_contig199994.5630.1|Name=mRNA_H-elongata_contig199994.5630.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig199994:452..976+ (Himanthalia elongata Himel1 dioecious)
AGAGCTGATCCTAGGGAGCACGTGATCAAGGGGTCGGTGATCGCGGCGAA
TCAAACCGAATTCCCCCACTCGATCGACAGCTTCCCCCCGCTCCTGAACA
GCGAGAGAGCTGATCCTAGGGAGCACGTGATCAAGGGGTCGGTGATCGCG
GCGAATCAAACCGAATTCCCCCACTCGATCGACAGCTTCCCCCCGCTCCT
GAACAGCGAGGTTTACTACAACGGCACCTCCAAGAGGTTCTGGTGGAACC
AAAACGCAGAGGCCGTGTGCGTCTATGCTCCAGTTCCTACGGGTTTCGAT
CCAGAGAAGGTGGAATTCGTGGCCAAGTCGAGACACGTCTCGTTCAAGGT
CGACGGCGAGGAGGTTTACTACAACGGCACCTCCAAGAGGTTCTGGTGGA
ACCAAAACGCAGAGGCCGTGTGCGTCTATGCTCCAGTTCCTACGGGTTTC
GATCCAGAGAAGGTGGAATTCGTGGCCAAGTCGAGACACGTCTCGTTCAA
GGTCGACGGCGAGGAG
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