mRNA_H-elongata_contig199988.5629.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199988.5629.1
Unique NamemRNA_H-elongata_contig199988.5629.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig199988.5629.1 vs. uniprot
Match: D7FNJ6_ECTSI (Lon protease homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNJ6_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.920e-40
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 DHYGLDDIKERILEFIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKALNREFYRFSVGGLRDVAEIKGHR 219
            DHYGLDDIKERILEFIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKAL+REFYRFSVGGLRDVAEIKGHR
Sbjct:  515 DHYGLDDIKERILEFIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKALDREFYRFSVGGLRDVAEIKGHR 587
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BLAST of mRNA_H-elongata_contig199988.5629.1 vs. uniprot
Match: A0A7J6U5E5_PEROL (ATP-dependent Lon protease pim1 (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6U5E5_PEROL)

HSP 1 Score: 129 bits (325), Expect = 4.790e-37
Identity = 60/73 (82.19%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:    1 DHYGLDDIKERILEFIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKALNREFYRFSVGGLRDVAEIKGHR 219
            DHYGL D+KERILEFIAVGKLRG + G+ILC VGPPGVGKTS+G SIA+++NREFYRFSVGGL DVAEIKGHR
Sbjct:   15 DHYGLKDVKERILEFIAVGKLRGSLQGKILCLVGPPGVGKTSVGKSIARSINREFYRFSVGGLSDVAEIKGHR 87
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BLAST of mRNA_H-elongata_contig199988.5629.1 vs. uniprot
Match: A0A7S3XLI5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLI5_HETAK)

HSP 1 Score: 130 bits (326), Expect = 4.910e-36
Identity = 59/73 (80.82%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:    1 DHYGLDDIKERILEFIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKALNREFYRFSVGGLRDVAEIKGHR 219
            +H+GL+D+KER+LEFIAVG+LRG VHG+ILC  GPPGVGKTSIG SIA+ALNRE+YRFSVGGL DVAEIKGHR
Sbjct:   72 EHHGLEDVKERVLEFIAVGRLRGAVHGKILCLAGPPGVGKTSIGRSIARALNREYYRFSVGGLSDVAEIKGHR 144
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BLAST of mRNA_H-elongata_contig199988.5629.1 vs. uniprot
Match: A0A835YRA9_9STRA (Lon protease homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRA9_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.000e-35
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:    1 DHYGLDDIKERILEFIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKALNREFYRFSVGGLRDVAEIKGHR 219
            DHYGLDDIK+RILEFIAVGKLRG VHG+ILCF GPPGVGKTSIG SIA+ALNREF+RFSVGGL D+AEIKGHR
Sbjct:  354 DHYGLDDIKQRILEFIAVGKLRGTVHGKILCFAGPPGVGKTSIGQSIARALNREFFRFSVGGLTDIAEIKGHR 426
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BLAST of mRNA_H-elongata_contig199988.5629.1 vs. uniprot
Match: A0A7J6SS70_PEROL (ATP-dependent Lon protease pim1 (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SS70_PEROL)

HSP 1 Score: 129 bits (325), Expect = 1.010e-35
Identity = 60/73 (82.19%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:    1 DHYGLDDIKERILEFIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKALNREFYRFSVGGLRDVAEIKGHR 219
            DHYGL D+KERILEFIAVGKLRG + G+ILC VGPPGVGKTS+G SIA+++NREFYRFSVGGL DVAEIKGHR
Sbjct:   98 DHYGLKDVKERILEFIAVGKLRGSLQGKILCLVGPPGVGKTSVGKSIARSINREFYRFSVGGLSDVAEIKGHR 170
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BLAST of mRNA_H-elongata_contig199988.5629.1 vs. uniprot
Match: A0A2G5BDB7_COERN (Lon protease homolog, mitochondrial n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BDB7_COERN)

HSP 1 Score: 135 bits (341), Expect = 1.890e-35
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:    1 DHYGLDDIKERILEFIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKALNREFYRFSVGGLRDVAEIKGHR 219
            DHYGLDD+K+RILEFIAVGKLRG V G+ILCFVGPPGVGKTSIG SIA++LNREFYRFSVGGL DVAEIKGHR
Sbjct:  574 DHYGLDDVKQRILEFIAVGKLRGAVQGKILCFVGPPGVGKTSIGKSIARSLNREFYRFSVGGLTDVAEIKGHR 646
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BLAST of mRNA_H-elongata_contig199988.5629.1 vs. uniprot
Match: A0A2P6MZ80_9EUKA (Lon protease like protein (Fragment) n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MZ80_9EUKA)

HSP 1 Score: 134 bits (336), Expect = 8.340e-35
Identity = 63/73 (86.30%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:    1 DHYGLDDIKERILEFIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKALNREFYRFSVGGLRDVAEIKGHR 219
            DHYGL D+KERILEFIAVGKLR GV G+ILCFVGPPGVGKTSIG SIAKA NREFYRFS+GG+RDVAEI+GHR
Sbjct:  425 DHYGLKDVKERILEFIAVGKLRAGVQGKILCFVGPPGVGKTSIGKSIAKATNREFYRFSLGGMRDVAEIRGHR 497
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BLAST of mRNA_H-elongata_contig199988.5629.1 vs. uniprot
Match: A0A8K1CMW1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMW1_PYTOL)

HSP 1 Score: 134 bits (336), Expect = 8.890e-35
Identity = 63/73 (86.30%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:    1 DHYGLDDIKERILEFIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKALNREFYRFSVGGLRDVAEIKGHR 219
            DHYGL DIKERILEF+AV KL+GGV G+ILCFVGPPGVGKTSIG SIA++LNREFYRFSVGGL DVAEIKGHR
Sbjct:  454 DHYGLSDIKERILEFVAVSKLKGGVQGKILCFVGPPGVGKTSIGQSIARSLNREFYRFSVGGLSDVAEIKGHR 526
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BLAST of mRNA_H-elongata_contig199988.5629.1 vs. uniprot
Match: A0A2T9YHI6_9FUNG (Lon protease homolog, mitochondrial n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9YHI6_9FUNG)

HSP 1 Score: 134 bits (336), Expect = 8.930e-35
Identity = 61/73 (83.56%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:    1 DHYGLDDIKERILEFIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKALNREFYRFSVGGLRDVAEIKGHR 219
            DHYGLDD+K+RILEF+AVGKL+G + G+ILCFVGPPGVGKTSIG SIA++LNREFYRFSVGGL DVAEIKGHR
Sbjct:  609 DHYGLDDVKDRILEFVAVGKLKGAIQGKILCFVGPPGVGKTSIGKSIARSLNREFYRFSVGGLSDVAEIKGHR 681
[Close]
BLAST of mRNA_H-elongata_contig199988.5629.1 vs. uniprot
Match: A0A7S1KVJ6_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1KVJ6_ALECA)

HSP 1 Score: 130 bits (328), Expect = 1.130e-34
Identity = 63/73 (86.30%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:    1 DHYGLDDIKERILEFIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKALNREFYRFSVGGLRDVAEIKGHR 219
            DHYGL D+KERILE IAVG LRG V G+ILCFVGPPGVGKTSIG SIA+ALNREFYRFSVGGL DVAEIKGHR
Sbjct:  188 DHYGLSDVKERILELIAVGSLRGAVQGKILCFVGPPGVGKTSIGRSIAEALNREFYRFSVGGLFDVAEIKGHR 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199988.5629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNJ6_ECTSI1.920e-4098.63Lon protease homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7J6U5E5_PEROL4.790e-3782.19ATP-dependent Lon protease pim1 (Fragment) n=1 Tax... [more]
A0A7S3XLI5_HETAK4.910e-3680.82Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YRA9_9STRA1.000e-3587.67Lon protease homolog n=1 Tax=Tribonema minus TaxID... [more]
A0A7J6SS70_PEROL1.010e-3582.19ATP-dependent Lon protease pim1 (Fragment) n=1 Tax... [more]
A0A2G5BDB7_COERN1.890e-3587.67Lon protease homolog, mitochondrial n=1 Tax=Coeman... [more]
A0A2P6MZ80_9EUKA8.340e-3586.30Lon protease like protein (Fragment) n=1 Tax=Plano... [more]
A0A8K1CMW1_PYTOL8.890e-3586.30Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2T9YHI6_9FUNG8.930e-3583.56Lon protease homolog, mitochondrial n=1 Tax=Smitti... [more]
A0A7S1KVJ6_ALECA1.130e-3486.30Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199988contigH-elongata_contig199988:208..429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue3.8e-34
Seed eggNOG ortholog2880.D7FNJ6
Preferred namePIM1
KEGG koko:K08675
GOsGO:0000002,GO:0000166,GO:0001018,GO:0001067,GO:0001666,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003727,GO:0003824,GO:0004175,GO:0004176,GO:0004252,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005829,GO:0006139,GO:0006259,GO:0006508,GO:0006515,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009295,GO:0009314,GO:0009408,GO:0009507,GO:0009536,GO:0009628,GO:0009719,GO:0009725,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010044,GO:0010165,GO:0010212,GO:0010604,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017171,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022607,GO:0030163,GO:0030554,GO:0031974,GO:0031981,GO:0032042,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034599,GO:0034622,GO:0034641,GO:0035639,GO:0035694,GO:0036094,GO:0036293,GO:0042176,GO:0042221,GO:0042579,GO:0042623,GO:0042645,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043531,GO:0043565,GO:0043632,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051131,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051603,GO:0051716,GO:0051880,GO:0060255,GO:0065003,GO:0065007,GO:0070011,GO:0070013,GO:0070182,GO:0070407,GO:0070482,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial
EggNOG OGsCOG0466@1,KOG2004@2759
EC3.4.21.53
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930126.8201597-CDS-H-elongata_contig199988:207..4291622930126.8201597-CDS-H-elongata_contig199988:207..429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199988 208..429 -
1691679291.2711265-CDS-H-elongata_contig199988:207..4291691679291.2711265-CDS-H-elongata_contig199988:207..429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199988 208..429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199988.5629.1prot_H-elongata_contig199988.5629.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199988 208..429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199988.5629.1

>prot_H-elongata_contig199988.5629.1 ID=prot_H-elongata_contig199988.5629.1|Name=mRNA_H-elongata_contig199988.5629.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
DHYGLDDIKERILEFIAVGKLRGGVHGRILCFVGPPGVGKTSIGHSIAKA
LNREFYRFSVGGLRDVAEIKGHR*
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mRNA from alignment at H-elongata_contig199988:208..429-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199988.5629.1 ID=mRNA_H-elongata_contig199988.5629.1|Name=mRNA_H-elongata_contig199988.5629.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig199988:208..429- (Himanthalia elongata Himel1 dioecious)
GACCACTACGGACTCGACGATATCAAAGAGCGTATTCTGGAGTTCATCGC
TGTGGGGAAGCTCCGCGGAGGGGTTCACGGCCGCATATTGTGCTTCGTTG
GCCCCCCGGGTGTGGGCAAGACCTCGATCGGTCACAGCATCGCCAAGGCG
CTTAACAGGGAGTTCTACAGGTTTAGCGTCGGCGGGCTGAGGGATGTGGC
GGAGATCAAAGGACACCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig199988:208..429-

>mRNA_H-elongata_contig199988.5629.1 ID=mRNA_H-elongata_contig199988.5629.1|Name=mRNA_H-elongata_contig199988.5629.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig199988:208..429- (Himanthalia elongata Himel1 dioecious)
GACCACTACGGACTCGACGATATCAAAGAGCGTATTCTGGAGTTCATCGC
TGTGGGGAAGCTCCGCGGAGGGGTTCACGGCCGCATATTGTGCTTCGTTG
GCCCCCCGGGTGTGGGCAAGACCTCGATCGGTCACAGCATCGCCAAGGCG
CTTAACAGGGAGTTCTACAGGTTTAGCGTCGGCGGGCTGAGGGATGTGGC
GGAGATCAAAGGACACCGGTGAGACCACTACGGACTCGACGATATCAAAG
AGCGTATTCTGGAGTTCATCGCTGTGGGGAAGCTCCGCGGAGGGGTTCAC
GGCCGCATATTGTGCTTCGTTGGCCCCCCGGGTGTGGGCAAGACCTCGAT
CGGTCACAGCATCGCCAAGGCGCTTAACAGGGAGTTCTACAGGTTTAGCG
TCGGCGGGCTGAGGGATGTGGCGGAGATCAAAGGACACCGGTGA
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