mRNA_H-elongata_contig199800.5622.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199800.5622.1
Unique NamemRNA_H-elongata_contig199800.5622.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig199800.5622.1 vs. uniprot
Match: D8LGK3_ECTSI (Vta1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK3_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 6.490e-23
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 MAMTIPRTLKPVTQFVRRAEKLDTAHEPEAPVVAYYCRLYAVDQAMKLKDNSEEG 165
            MAM+IP  LKPVTQ+VRRAE+LD A EPEAPVVAY+CR+YA +QAMKL+DNSE G
Sbjct:    1 MAMSIPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRMYATEQAMKLQDNSEAG 55
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BLAST of mRNA_H-elongata_contig199800.5622.1 vs. uniprot
Match: A0A418DW00_9STRA (Vta1 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DW00_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.700e-9
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 MAMTIPRTLKPVTQFVRRAEKLDTAHE-PEAPVVAYYCRLYAVDQAMKLK--DNSEEG 165
            MA  IP T K VT F+RRAE+LD     PE+ +VAYYCR YA++  +KL+  D S+E 
Sbjct:    1 MASKIPATFKAVTPFIRRAEELDRDRSRPESQMVAYYCRQYAMELGIKLRNHDASDEA 58
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BLAST of mRNA_H-elongata_contig199800.5622.1 vs. uniprot
Match: A0A1V9Z1A8_9STRA (Cell 5A endo-1,4-betaglucanase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z1A8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.930e-9
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 MAMTIPRTLKPVTQFVRRAEKLDTAH-EPEAPVVAYYCRLYAVDQAMKLKDN--SEEG 165
            MA  IP T K +T F+RRAE+LD     PE+ +VAYYCR YA++  +KL++N  SEE 
Sbjct:  600 MASKIPATFKAITPFIRRAEELDRDRTRPESKMVAYYCRQYAMELGIKLRENDASEEA 657
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BLAST of mRNA_H-elongata_contig199800.5622.1 vs. uniprot
Match: A0A067BNV3_SAPPC (Vta1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BNV3_SAPPC)

HSP 1 Score: 58.2 bits (139), Expect = 1.720e-8
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 MAMTIPRTLKPVTQFVRRAEKLDTAH-EPEAPVVAYYCRLYAVDQAMKLKDN 153
            MA  IP T K +T F+RRAE+LD     PE+ +VAYYCR YA++  +KL++N
Sbjct:    1 MASKIPATFKAITPFIRRAEELDRDRTRPESKMVAYYCRQYAMELGIKLREN 52
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BLAST of mRNA_H-elongata_contig199800.5622.1 vs. uniprot
Match: A0A1V9ZIF3_9STRA (Vacuolar protein sorting-associated protein VTA1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIF3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.750e-8
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 MAMTIPRTLKPVTQFVRRAEKLDTAH-EPEAPVVAYYCRLYAVDQAMKLKDN 153
            MA  IP T K +T F+RRAE+LD     PE+ +VAYYCR YA++  +KL++N
Sbjct:    1 MASKIPATFKAITPFIRRAEELDRDRTRPESKMVAYYCRQYAMELGIKLREN 52
[Close]
BLAST of mRNA_H-elongata_contig199800.5622.1 vs. uniprot
Match: A0A397D5Y7_9STRA (Vta1 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D5Y7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.160e-8
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 MAMTIPRTLKPVTQFVRRAEKLDTAHE-PEAPVVAYYCRLYAVDQAMKLK--DNSEEG 165
            MA  IP T K VT F+RRAE+LD     PE+ +VAYYCR YA++  +KL+  D S+E 
Sbjct:    1 MASKIPATFKAVTPFIRRAEELDRDRSRPESQMVAYYCRQYAMELGIKLRNHDASDEA 58
[Close]
BLAST of mRNA_H-elongata_contig199800.5622.1 vs. uniprot
Match: A0A024TGV6_9STRA (Vta1 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TGV6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.080e-8
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 MAMTIPRTLKPVTQFVRRAEKLDT-AHEPEAPVVAYYCRLYAVDQAMKLKDN 153
            MA  IP T K VT F+RRAE+LD     PE+ +VAYYCR YA++  +KL+++
Sbjct:    1 MASKIPATFKAVTPFIRRAEELDRDKSRPESKMVAYYCRQYAMELGIKLREH 52
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BLAST of mRNA_H-elongata_contig199800.5622.1 vs. uniprot
Match: W4FW13_9STRA (Vta1 domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FW13_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.180e-8
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 MAMTIPRTLKPVTQFVRRAEKLDTAHE-PEAPVVAYYCRLYAVDQAMKLK--DNSEEG 165
            MA  IP T K VT F+RRAE+LD     PE+ +VAYYCR YA++  +KL+  D S+E 
Sbjct:    1 MASKIPATFKAVTPFIRRAEELDRDRSRPESQMVAYYCRQYAMELGIKLRNHDASDEA 58
[Close]
BLAST of mRNA_H-elongata_contig199800.5622.1 vs. uniprot
Match: A0A6G0WAG3_9STRA (Vta1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WAG3_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 8.630e-8
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 MAMTIPRTLKPVTQFVRRAEKLDTAH-EPEAPVVAYYCRLYAVDQAMKLKDN 153
            MA  IP T K +T F+RRAE+LD     PE+ +VAYYCR YA++  +KL+++
Sbjct:    1 MASKIPATFKAITPFIRRAEELDRDRTRPESKMVAYYCRQYAMELGIKLREH 52
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BLAST of mRNA_H-elongata_contig199800.5622.1 vs. uniprot
Match: A0A7S2R0K1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0K1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.620e-7
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 MAMTIPRTLKPVTQFVRRAEKLDTAHEPEAPVVAYYCRLYAVDQAMKLKDNSEEG 165
            M + +P  LK +TQFVRRAE+LD+   PE+ VV+YY R YAV   + L  ++ + 
Sbjct:    1 MPLKVPPELKKITQFVRRAEELDSESSPESRVVSYYSRQYAVQMGLPLAGSTPKA 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199800.5622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGK3_ECTSI6.490e-2376.36Vta1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A418DW00_9STRA8.700e-951.72Vta1 domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A1V9Z1A8_9STRA9.930e-951.72Cell 5A endo-1,4-betaglucanase n=1 Tax=Thraustothe... [more]
A0A067BNV3_SAPPC1.720e-851.92Vta1 domain-containing protein n=2 Tax=Saprolegnia... [more]
A0A1V9ZIF3_9STRA1.750e-851.92Vacuolar protein sorting-associated protein VTA1 n... [more]
A0A397D5Y7_9STRA2.160e-851.72Vta1 domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A024TGV6_9STRA6.080e-851.92Vta1 domain-containing protein n=1 Tax=Aphanomyces... [more]
W4FW13_9STRA6.180e-851.72Vta1 domain-containing protein n=3 Tax=Aphanomyces... [more]
A0A6G0WAG3_9STRA8.630e-850.00Vta1 domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A7S2R0K1_9STRA1.620e-745.45Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199800contigH-elongata_contig199800:305..472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930126.2709978-CDS-H-elongata_contig199800:304..4721622930126.2709978-CDS-H-elongata_contig199800:304..472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199800 305..472 +
1691679291.0194895-CDS-H-elongata_contig199800:304..4721691679291.0194895-CDS-H-elongata_contig199800:304..472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199800 305..472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199800.5622.1prot_H-elongata_contig199800.5622.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199800 305..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199800.5622.1

>prot_H-elongata_contig199800.5622.1 ID=prot_H-elongata_contig199800.5622.1|Name=mRNA_H-elongata_contig199800.5622.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MAMTIPRTLKPVTQFVRRAEKLDTAHEPEAPVVAYYCRLYAVDQAMKLKD
NSEEG*
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mRNA from alignment at H-elongata_contig199800:305..472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199800.5622.1 ID=mRNA_H-elongata_contig199800.5622.1|Name=mRNA_H-elongata_contig199800.5622.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig199800:305..472+ (Himanthalia elongata Himel1 dioecious)
ATGGCGATGACGATACCCCGTACCCTGAAACCCGTGACGCAGTTCGTGCG
TCGGGCTGAGAAGCTTGACACCGCCCACGAACCGGAAGCCCCAGTCGTGG
CCTACTATTGCAGGCTTTACGCCGTCGATCAGGCTATGAAGCTAAAGGAT
AACTCAGAAGAAGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig199800:305..472+

>mRNA_H-elongata_contig199800.5622.1 ID=mRNA_H-elongata_contig199800.5622.1|Name=mRNA_H-elongata_contig199800.5622.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig199800:305..472+ (Himanthalia elongata Himel1 dioecious)
ATGGCGATGACGATACCCCGTACCCTGAAACCCGTGACGCAGTTCGTGCG
TCGGGCTGAGAAGCTTGACACCGCCCACGAACCGGAAGCCCCAGTCGTGG
CCTACTATTGCAGGCTTTACGCCGTCGATCAGGCTATGAAGCTAAAGGAT
AACTCAGAAGAAGGGTAAATGGCGATGACGATACCCCGTACCCTGAAACC
CGTGACGCAGTTCGTGCGTCGGGCTGAGAAGCTTGACACCGCCCACGAAC
CGGAAGCCCCAGTCGTGGCCTACTATTGCAGGCTTTACGCCGTCGATCAG
GCTATGAAGCTAAAGGATAACTCAGAAGAAGGGTAA
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