mRNA_H-elongata_contig19976.5619.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19976.5619.1
Unique NamemRNA_H-elongata_contig19976.5619.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19976.5619.1 vs. uniprot
Match: D8LJ62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ62_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 5.950e-16
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    1 GKPTSFTIRLVANDGDP----------PNTAWNVQPGIFIYVWIANQDQIFIAEVVNNGDGTLTATYESSFPGKYLIYV 207
            G P SFTIRL   D             P+  +NV    FIYVW+A++D +F+A V NNG+GTLTA YESSFPG YL++V
Sbjct:   83 GVPASFTIRLAGVDASGARPEQQGEKNPDWDYNVDKKRFIYVWVASEDNVFVAGVRNNGNGTLTAAYESSFPGDYLVHV 161
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BLAST of mRNA_H-elongata_contig19976.5619.1 vs. uniprot
Match: D8LHZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ4_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.800e-15
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 GKPTSFTIRLVAND-GDPPNTAWNVQPGIFIYVWIANQDQIFIAEVVNNG--DGTLTATYESSFPGKYLIYV 207
            G+P SFTI+LV +  G  P+   N     FIYVWIAN+DQI IAEVV+ G  +GTLTATY+S FPG YL+Y+
Sbjct:   71 GRPASFTIQLVGDQLGSLPDWKPNTSTR-FIYVWIANKDQILIAEVVDGGSKNGTLTATYKSDFPGDYLVYI 141
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BLAST of mRNA_H-elongata_contig19976.5619.1 vs. uniprot
Match: D7FXD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXD9_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.220e-13
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    1 GKPTSFTIRLVAND--GDPPNTAWNVQPGI---FIYVWIANQDQIFIAEVVNNGD-GTLTATYESSFPGKYLIYV 207
            G   SFTI+LV ++  G   ++  N +P     FIYVWI+N+DQI IAE+V +G+ GTLTATY+S FPG YL+YV
Sbjct:   86 GISASFTIQLVGDNLGGSGGSSLPNWEPNSSSRFIYVWISNEDQILIAEIVGDGNTGTLTATYKSDFPGDYLVYV 160
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BLAST of mRNA_H-elongata_contig19976.5619.1 vs. uniprot
Match: A0A6H5JGZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGZ7_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.050e-13
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 GKPTSFTIRLVAND-GD----PPNTAWN-VQPGIFIYVWIANQDQIFIAEVVNNG--DGTLTATYESSFPGKYLIYV 207
            G P SFTI+LV ++ GD     PN  W  ++   FIYVWIAN+DQI  AEVV+ G  DGTLTATY+S FPG Y +++
Sbjct:   74 GMPASFTIQLVGDNLGDFHVLLPN--WERIRSRRFIYVWIANEDQILTAEVVDGGRKDGTLTATYKSDFPGNYSVHI 148
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BLAST of mRNA_H-elongata_contig19976.5619.1 vs. uniprot
Match: A0A6H5K8P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.410e-11
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:   13 SFTIRLVAND----GDPPNTAWNVQPGI-FIYVWIANQDQIFIAEVVNNG--DGTLTATYESSFPGKYLIYV 207
            SFTI LV ++    G  P+  W       FIYVWI ++DQI IAEVV +G  +GTLTATY+S FPG YL++V
Sbjct:    2 SFTIELVGDEIGGGGSLPD--WEPNSSFRFIYVWICSKDQILIAEVVGDGSNNGTLTATYQSDFPGDYLVHV 71
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BLAST of mRNA_H-elongata_contig19976.5619.1 vs. uniprot
Match: D7FLN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN2_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.120e-10
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   85 FIYVWIANQDQIFIAEVVNNGDGTLTATYESSFPGKYLIYV 207
            F+YVWIA+ D +  A VV+NGDGTLTATYES +PG YL++V
Sbjct:    6 FVYVWIASTDHVLHAAVVDNGDGTLTATYESPYPGDYLVHV 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19976.5619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LJ62_ECTSI5.950e-1650.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LHZ4_ECTSI2.800e-1558.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXD9_ECTSI2.220e-1353.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JGZ7_9PHAE3.050e-1354.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8P1_9PHAE2.410e-1152.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLN2_ECTSI2.120e-1065.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19976contigH-elongata_contig19976:2850..3056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog2880.D8LJ62
EggNOG OGs2E5RD@1,2SCI8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930126.074253-CDS-H-elongata_contig19976:2849..30561622930126.074253-CDS-H-elongata_contig19976:2849..3056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19976 2850..3056 +
1691679290.9571795-CDS-H-elongata_contig19976:2849..30561691679290.9571795-CDS-H-elongata_contig19976:2849..3056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19976 2850..3056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19976.5619.1prot_H-elongata_contig19976.5619.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19976 2850..3056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19976.5619.1

>prot_H-elongata_contig19976.5619.1 ID=prot_H-elongata_contig19976.5619.1|Name=mRNA_H-elongata_contig19976.5619.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
GKPTSFTIRLVANDGDPPNTAWNVQPGIFIYVWIANQDQIFIAEVVNNGD
GTLTATYESSFPGKYLIYV
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mRNA from alignment at H-elongata_contig19976:2850..3056+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19976.5619.1 ID=mRNA_H-elongata_contig19976.5619.1|Name=mRNA_H-elongata_contig19976.5619.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig19976:2850..3056+ (Himanthalia elongata Himel1 dioecious)
GGCAAGCCGACATCCTTCACAATTCGACTCGTCGCTAACGATGGAGACCC
CCCTAATACCGCGTGGAATGTTCAGCCCGGGATATTTATTTACGTCTGGA
TAGCCAACCAAGACCAGATCTTCATCGCCGAAGTGGTCAACAACGGGGAT
GGAACCCTAACCGCCACCTACGAGAGCTCTTTTCCAGGGAAGTATCTTAT
CTACGTT
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Coding sequence (CDS) from alignment at H-elongata_contig19976:2850..3056+

>mRNA_H-elongata_contig19976.5619.1 ID=mRNA_H-elongata_contig19976.5619.1|Name=mRNA_H-elongata_contig19976.5619.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig19976:2850..3056+ (Himanthalia elongata Himel1 dioecious)
GGCAAGCCGACATCCTTCACAATTCGACTCGTCGCTAACGATGGAGACCC
CCCTAATACCGCGTGGAATGTTCAGCCCGGGATATTTATTTACGTCTGGA
TAGCCAACCAAGACCAGATCTTCATCGCCGAAGTGGTCAACAACGGGGAT
GGAACCCTAACCGCCACCTACGAGAGCTCTTTTCCAGGGAAGTATCTTAT
CTACGTTGGCAAGCCGACATCCTTCACAATTCGACTCGTCGCTAACGATG
GAGACCCCCCTAATACCGCGTGGAATGTTCAGCCCGGGATATTTATTTAC
GTCTGGATAGCCAACCAAGACCAGATCTTCATCGCCGAAGTGGTCAACAA
CGGGGATGGAACCCTAACCGCCACCTACGAGAGCTCTTTTCCAGGGAAGT
ATCTTATCTACGTT
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