mRNA_H-elongata_contig19968.5616.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19968.5616.1
Unique NamemRNA_H-elongata_contig19968.5616.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: A0A6H5JS96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 3.940e-39
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 1
Query:   67 NVCPCGVDVCYDPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLSQGHSLVVEVKEPYTVETPGCSKDASP 354
            +VCP G  VC DPH+QGLRGQ I+W+GVDGGWY+L+KD+  D+ INVR TAP+P+ FPDRQ +T +AVLS+GHS+V+EV+ PYTV T GC +  SP
Sbjct:  103 SVCPPGDAVCGDPHMQGLRGQRIDWSGVDGGWYSLIKDDNIDININVRLTAPLPDEFPDRQLMTSLAVLSKGHSVVIEVENPYTVVTNGCPEGVSP 198          
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: D7G4E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E8_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.310e-34
Identity = 49/84 (58.33%), Postives = 67/84 (79.76%), Query Frame = 1
Query:   82 GVDVCYDPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLSQGHSLVVEVKEPYTVETPG 333
            G D+C DPH++GLRGQHI+W GVDGGWYA +KD++ DL +NVR TAP+PE FP+RQ +TG++V++  HSL++EV  PY  +  G
Sbjct:    4 GTDICDDPHMKGLRGQHIDWFGVDGGWYAFIKDDDIDLHVNVRLTAPLPEEFPERQLVTGLSVIAGEHSLILEVTNPYDTDING 87          
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.680e-34
Identity = 53/89 (59.55%), Postives = 72/89 (80.90%), Query Frame = 1
Query:   88 DVCYDPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLSQGHSLVVEVKEPYTVETPGCSKDASP 354
            D+  DPH++GLRGQ I W+GVDGGWY+LVKD+  DL INVR TAP+P+ FPDRQ +T +A++S+G+S+V+EV+ PYT+ T GC +  SP
Sbjct:   11 DMWGDPHMRGLRGQRINWSGVDGGWYSLVKDDHADLSINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVENPYTIVTGGCPEGVSP 99          
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: A0A6H5JP37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP37_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.770e-34
Identity = 50/85 (58.82%), Postives = 69/85 (81.18%), Query Frame = 1
Query:  100 DPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLSQGHSLVVEVKEPYTVETPGCSKDASP 354
            DPH++GL GQ + W+G DGGWY+L+KD+  DL INVR TAP+P+ FPDRQ +T +A++S+G+S+V+EVK PYT +T GC +D SP
Sbjct:   20 DPHMRGLLGQRVNWSGFDGGWYSLIKDDNADLHINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVKNPYTTDTGGCPEDVSP 104          
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.350e-31
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 1
Query:   70 VCPCGVDVCYDPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLSQGHSLVVEVKEPYTVETPGCSKDASP 354
            +CP G  +C DPH++GL GQ I+W GVDG WY+ VKD + DL++NVR TAP+P+ FPDRQ +TG++V+S+GHSLV+EV  PY+ +      D SP
Sbjct:  394 ICPKGSHICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLRVNVRLTAPLPDDFPDRQLVTGLSVISEGHSLVLEVTNPYSTDLNDGCPDGSP 488          
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: A0A6H5KYD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD0_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.070e-22
Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  100 DPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLS-QGHSLVVEVKEPYTVETPGCSKDASP 354
            D H+ GL GQ I+W G D GWY L+ + E   Q+N R TAPMP+ FP RQ ++G+++ S +G SLVVEVK P T ET GCS  ++P
Sbjct:   10 DSHMVGLLGQEIDWYGEDSGWYCLLVNSE--FQVNARVTAPMPDEFPTRQLVSGVSIRSAEGPSLVVEVKNPITTETEGCSSTSAP 93          
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: D7G544_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G544_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 7.620e-18
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   79 CGVDVCYDPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLSQG-HSLVVEVKEPYTVETPGC 336
            C   +  DPHL GLRGQH +W G DGGWYA +    D LQ+N+R T+ +P +FP+RQ +TG+A++++G H++  ++ +P  +  P C
Sbjct:  238 CTPRIWDDPHLTGLRGQHFDWYGQDGGWYAFLSTP-DQLQMNLRVTSHLPATFPERQLVTGVALVTEGGHTITADIVDPLDL-APTC 322          
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: A0A6H5JW46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW46_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 7.410e-15
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   82 GVDVCYDPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLS-----QGHSLVVEVKEPYTVETPGCSKDASP 354
            G   C DPH+ G  GQ  ++TG DGG+YAL+ D  + + +N+R T+P+P S P+  +ITG+++L+     + HS+V+EVK P+ +E+  C    SP
Sbjct:   84 GPRACGDPHMTGFLGQKFDFTGEDGGYYALISDFPN-MHMNMRVTSPVP-SLPEITYITGLSLLTTDANGEVHSIVIEVKNPHDIES-ACPAGVSP 176          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JS96_9PHAE3.940e-3963.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4E8_ECTSI1.310e-3458.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMW2_ECTSI1.680e-3459.55Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JP37_9PHAE4.770e-3458.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNZ2_9PHAE2.350e-3154.74VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KYD0_9PHAE2.070e-2252.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G544_ECTSI7.620e-1843.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JW46_9PHAE7.410e-1540.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19968contigH-elongata_contig19968:1427..2099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size356
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930125.8434367-CDS-H-elongata_contig19968:1426..14801622930125.8434367-CDS-H-elongata_contig19968:1426..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19968 1427..1480 +
1691679290.8556418-CDS-H-elongata_contig19968:1426..14801691679290.8556418-CDS-H-elongata_contig19968:1426..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19968 1427..1480 +
1622930125.865103-CDS-H-elongata_contig19968:1797..20971622930125.865103-CDS-H-elongata_contig19968:1797..2097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19968 1798..2097 +
1691679290.8693404-CDS-H-elongata_contig19968:1797..20971691679290.8693404-CDS-H-elongata_contig19968:1797..2097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19968 1798..2097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19968.5616.1prot_H-elongata_contig19968.5616.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19968 1427..2097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19968.5616.1

>prot_H-elongata_contig19968.5616.1 ID=prot_H-elongata_contig19968.5616.1|Name=mRNA_H-elongata_contig19968.5616.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
GESEITADSDEEDTVLIIDIETNVCPCGVDVCYDPHLQGLRGQHIEWTGV
DGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLSQGHSLVVE
VKEPYTVETPGCSKDASP
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mRNA from alignment at H-elongata_contig19968:1427..2099+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19968.5616.1 ID=mRNA_H-elongata_contig19968.5616.1|Name=mRNA_H-elongata_contig19968.5616.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=673bp|location=Sequence derived from alignment at H-elongata_contig19968:1427..2099+ (Himanthalia elongata Himel1 dioecious)
GGCGAATCGGAAATCACAGCTGATAGTGATGAGGAGGACACCGTTCTGAT TATTGTGAGTATTTGTGTCAAGCTCAATAACATGCGTCATCAGTTCTCGT TTGCTTGCATGGCAAGCGTTCGACCAACAACATTGTTCGTACTCAGTGGT GCCAAAATCATTTCCGGGCAACCTGATTTGACAACTTTCCTATCACGCAG TCCGTAACGAGATACTCATAGCGGAACGAAACGAAATGTTATACCATCGA AATCTATCGAAATTATTTATTATATTACATGTTATGTATTCTAGCATGAT CACGTTGACCATTCCGACAATAAATCTATAAATCTCGTCGTGGGACTTAT CGCCTACCTTTTCCTTGTCAGGACATCGAGACGAACGTTTGCCCCTGTGG CGTGGACGTATGCTATGATCCGCACCTGCAAGGCCTCCGTGGACAGCACA TCGAGTGGACTGGAGTAGACGGAGGGTGGTATGCCCTCGTCAAGGACGAA GAAGATGATCTTCAGATCAACGTGCGCACCACCGCGCCTATGCCCGAATC TTTCCCCGATCGCCAGTTCATCACTGGTATGGCCGTTCTATCGCAGGGGC ACTCCCTCGTTGTCGAGGTCAAGGAACCCTACACCGTTGAGACACCTGGC TGCTCTAAAGATGCCTCGCCCTG
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Coding sequence (CDS) from alignment at H-elongata_contig19968:1427..2099+

>mRNA_H-elongata_contig19968.5616.1 ID=mRNA_H-elongata_contig19968.5616.1|Name=mRNA_H-elongata_contig19968.5616.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig19968:1427..2099+ (Himanthalia elongata Himel1 dioecious)
GGCGAATCGGAAATCACAGCTGATAGTGATGAGGAGGACACCGTTCTGAT
TATTGGCGAATCGGAAATCACAGCTGATAGTGATGAGGAGGACACCGTTC
TGATTATTGACATCGAGACGAACGTTTGCCCCTGTGGCGTGGACGTATGC
TATGATCCGCACCTGCAAGGCCTCCGTGGACAGCACATCGAGTGGACTGG
AGTAGACGGAGGGTGGTATGCCCTCGTCAAGGACGAAGAAGATGATCTTC
AGATCAACGTGCGCACCACCGCGCCTATGCCCGAATCTTTCCCCGATCGC
CAGTTCATCACTGGTATGGCCGTTCTATCGCAGGGGCACTCCCTCGTTGT
CGAGGTCAAGGAACCCTACACCGTTGAGACACCTGGCTGCTCTAAAGATG
CCTCGCCCGACATCGAGACGAACGTTTGCCCCTGTGGCGTGGACGTATGC
TATGATCCGCACCTGCAAGGCCTCCGTGGACAGCACATCGAGTGGACTGG
AGTAGACGGAGGGTGGTATGCCCTCGTCAAGGACGAAGAAGATGATCTTC
AGATCAACGTGCGCACCACCGCGCCTATGCCCGAATCTTTCCCCGATCGC
CAGTTCATCACTGGTATGGCCGTTCTATCGCAGGGGCACTCCCTCGTTGT
CGAGGTCAAGGAACCCTACACCGTTGAGACACCTGGCTGCTCTAAAGATG
CCTCGCCC
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