mRNA_H-elongata_contig19968.5616.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: A0A6H5JS96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE) HSP 1 Score: 144 bits (363), Expect = 3.940e-39 Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 1
Query: 67 NVCPCGVDVCYDPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLSQGHSLVVEVKEPYTVETPGCSKDASP 354
+VCP G VC DPH+QGLRGQ I+W+GVDGGWY+L+KD+ D+ INVR TAP+P+ FPDRQ +T +AVLS+GHS+V+EV+ PYTV T GC + SP
Sbjct: 103 SVCPPGDAVCGDPHMQGLRGQRIDWSGVDGGWYSLIKDDNIDININVRLTAPLPDEFPDRQLMTSLAVLSKGHSVVIEVENPYTVVTNGCPEGVSP 198
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: D7G4E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E8_ECTSI) HSP 1 Score: 125 bits (314), Expect = 1.310e-34 Identity = 49/84 (58.33%), Postives = 67/84 (79.76%), Query Frame = 1
Query: 82 GVDVCYDPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLSQGHSLVVEVKEPYTVETPG 333
G D+C DPH++GLRGQHI+W GVDGGWYA +KD++ DL +NVR TAP+PE FP+RQ +TG++V++ HSL++EV PY + G
Sbjct: 4 GTDICDDPHMKGLRGQHIDWFGVDGGWYAFIKDDDIDLHVNVRLTAPLPEEFPERQLVTGLSVIAGEHSLILEVTNPYDTDING 87
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI) HSP 1 Score: 130 bits (326), Expect = 1.680e-34 Identity = 53/89 (59.55%), Postives = 72/89 (80.90%), Query Frame = 1
Query: 88 DVCYDPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLSQGHSLVVEVKEPYTVETPGCSKDASP 354
D+ DPH++GLRGQ I W+GVDGGWY+LVKD+ DL INVR TAP+P+ FPDRQ +T +A++S+G+S+V+EV+ PYT+ T GC + SP
Sbjct: 11 DMWGDPHMRGLRGQRINWSGVDGGWYSLVKDDHADLSINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVENPYTIVTGGCPEGVSP 99
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: A0A6H5JP37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP37_9PHAE) HSP 1 Score: 128 bits (322), Expect = 4.770e-34 Identity = 50/85 (58.82%), Postives = 69/85 (81.18%), Query Frame = 1
Query: 100 DPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLSQGHSLVVEVKEPYTVETPGCSKDASP 354
DPH++GL GQ + W+G DGGWY+L+KD+ DL INVR TAP+P+ FPDRQ +T +A++S+G+S+V+EVK PYT +T GC +D SP
Sbjct: 20 DPHMRGLLGQRVNWSGFDGGWYSLIKDDNADLHINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVKNPYTTDTGGCPEDVSP 104
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE) HSP 1 Score: 126 bits (316), Expect = 2.350e-31 Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 1
Query: 70 VCPCGVDVCYDPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLSQGHSLVVEVKEPYTVETPGCSKDASP 354
+CP G +C DPH++GL GQ I+W GVDG WY+ VKD + DL++NVR TAP+P+ FPDRQ +TG++V+S+GHSLV+EV PY+ + D SP
Sbjct: 394 ICPKGSHICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLRVNVRLTAPLPDDFPDRQLVTGLSVISEGHSLVLEVTNPYSTDLNDGCPDGSP 488
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: A0A6H5KYD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD0_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 2.070e-22 Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 1
Query: 100 DPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLS-QGHSLVVEVKEPYTVETPGCSKDASP 354
D H+ GL GQ I+W G D GWY L+ + E Q+N R TAPMP+ FP RQ ++G+++ S +G SLVVEVK P T ET GCS ++P
Sbjct: 10 DSHMVGLLGQEIDWYGEDSGWYCLLVNSE--FQVNARVTAPMPDEFPTRQLVSGVSIRSAEGPSLVVEVKNPITTETEGCSSTSAP 93
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: D7G544_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G544_ECTSI) HSP 1 Score: 87.8 bits (216), Expect = 7.620e-18 Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 79 CGVDVCYDPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLSQG-HSLVVEVKEPYTVETPGC 336
C + DPHL GLRGQH +W G DGGWYA + D LQ+N+R T+ +P +FP+RQ +TG+A++++G H++ ++ +P + P C
Sbjct: 238 CTPRIWDDPHLTGLRGQHFDWYGQDGGWYAFLSTP-DQLQMNLRVTSHLPATFPERQLVTGVALVTEGGHTITADIVDPLDL-APTC 322
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Match: A0A6H5JW46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW46_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 7.410e-15 Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 1
Query: 82 GVDVCYDPHLQGLRGQHIEWTGVDGGWYALVKDEEDDLQINVRTTAPMPESFPDRQFITGMAVLS-----QGHSLVVEVKEPYTVETPGCSKDASP 354
G C DPH+ G GQ ++TG DGG+YAL+ D + + +N+R T+P+P S P+ +ITG+++L+ + HS+V+EVK P+ +E+ C SP
Sbjct: 84 GPRACGDPHMTGFLGQKFDFTGEDGGYYALISDFPN-MHMNMRVTSPVP-SLPEITYITGLSLLTTDANGEVHSIVIEVKNPHDIES-ACPAGVSP 176 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19968.5616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19968.5616.1 >prot_H-elongata_contig19968.5616.1 ID=prot_H-elongata_contig19968.5616.1|Name=mRNA_H-elongata_contig19968.5616.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp GESEITADSDEEDTVLIIDIETNVCPCGVDVCYDPHLQGLRGQHIEWTGVback to top mRNA from alignment at H-elongata_contig19968:1427..2099+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19968.5616.1 ID=mRNA_H-elongata_contig19968.5616.1|Name=mRNA_H-elongata_contig19968.5616.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=673bp|location=Sequence derived from alignment at H-elongata_contig19968:1427..2099+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19968:1427..2099+ >mRNA_H-elongata_contig19968.5616.1 ID=mRNA_H-elongata_contig19968.5616.1|Name=mRNA_H-elongata_contig19968.5616.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig19968:1427..2099+ (Himanthalia elongata Himel1 dioecious)back to top |