mRNA_H-elongata_contig199645.5614.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199645.5614.1
Unique NamemRNA_H-elongata_contig199645.5614.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig199645.5614.1 vs. uniprot
Match: D8LF40_ECTSI (Putative two-pore calcium channel (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF40_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 1.630e-76
Identity = 131/186 (70.43%), Postives = 153/186 (82.26%), Query Frame = 1 
Query:    1 QKANKQKLKSLFKLGVSKVVKQRAEEMDRMAKKGALYVMDAFAGRLKHGMAEMSTKSPYIFVAFRVQISWVWMWTIIVCSVAHSLMVFLEPRPGRGGEDGYLAPGTLRFLEAMFIAVYALDVALKVSYMGLKTYVKKPWQKLMIVITFILAVDATGLVGVRFARALRPGEIDTKELPLLVFFCIFS 558
            ++A KQKL+ LFK GVS+VV++RAEEMD MAKKG+LYVMDAFAGRL+HGMA MSTK  YIF+AFR+QIS  WMWTII  SVAHSL+VFLEPRPGR  EDG L PGTL  LEA FI VYALDVALK SYMGLK+YVKKPWQKLM+VI  +LA+DA+G+VGVRFARALRP  +  +   +  F+ + S
Sbjct:   66 KRARKQKLQRLFKQGVSRVVRERAEEMDLMAKKGSLYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSLLVFLEPRPGRPPEDGVLGPGTLLGLEAAFITVYALDVALKASYMGLKSYVKKPWQKLMVVIVLLLAIDASGVVGVRFARALRPAILSVRTRHIRRFYAVVS 251
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BLAST of mRNA_H-elongata_contig199645.5614.1 vs. uniprot
Match: A0A6H5KF87_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF87_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 2.270e-74
Identity = 130/186 (69.89%), Postives = 152/186 (81.72%), Query Frame = 1 
Query:    1 QKANKQKLKSLFKLGVSKVVKQRAEEMDRMAKKGALYVMDAFAGRLKHGMAEMSTKSPYIFVAFRVQISWVWMWTIIVCSVAHSLMVFLEPRPGRGGEDGYLAPGTLRFLEAMFIAVYALDVALKVSYMGLKTYVKKPWQKLMIVITFILAVDATGLVGVRFARALRPGEIDTKELPLLVFFCIFS 558
            ++A KQKL+ LFK GVS+VV++RAEEMD MAKKG+LYVMDAFAGRL+HGMA MSTK  YIF+AFR+QIS  WMWTII  SVAHSL+VFLEPRPGR  +DG L PGTL  LEA FI VYALDVALK SYMGLK+Y KKPWQKLM+VI  +LAVDA+G+VGVRFARALRP  +  +   +  F+ + S
Sbjct:   66 KRARKQKLQRLFKQGVSRVVRKRAEEMDLMAKKGSLYVMDAFAGRLQHGMAAMSTKPWYIFMAFRLQISAYWMWTIIASSVAHSLLVFLEPRPGRPPDDGVLGPGTLLGLEAAFITVYALDVALKASYMGLKSYFKKPWQKLMVVIVLLLAVDASGVVGVRFARALRPAILSVRTRHIRRFYAVVS 251
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BLAST of mRNA_H-elongata_contig199645.5614.1 vs. uniprot
Match: A0A7S2XMD6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMD6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.390e-18
Identity = 49/158 (31.01%), Postives = 83/158 (52.53%), Query Frame = 1 
Query:   31 LFKLGVSKVVKQRAEEMDRMAKKGALYVMDAFAGRLKHGMAEMSTKSPYIFVAFRVQISWVWMWTIIVCSVAHSLMVFLEPRPGRGGEDGYLAPGTLRFLEAMFIAVYALDVALKVSYMGLKTYVKKPWQKLMIVITFILAVDATGLVGVRFARALRP 504
            L +  +  + ++R + + + A+   L ++DAF GRLK+G+A  S KS  IF  F +Q S   ++T+I     H+L +F EP         Y       F++   I +Y  D+ALK+SY GLK Y    WQ++ +++T ++ +D        ++  LRP
Sbjct:   17 LLRKSIPDLARRRRKNVQQRAEYARLCILDAFQGRLKNGLASNSEKSKRIFTIFSIQTSASLLYTVIYACAFHTLSIFFEPENACSSSTIYY------FMQVSVILIYIFDIALKMSYQGLKEYWGHSWQQVYVIVTALICMDLLVCGCTHYSNFLRP 168
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BLAST of mRNA_H-elongata_contig199645.5614.1 vs. uniprot
Match: A9VBA5_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VBA5_MONBE)

HSP 1 Score: 54.3 bits (129), Expect = 1.110e-5
Identity = 33/105 (31.43%), Postives = 52/105 (49.52%), Query Frame = 1 
Query:  109 YVMDAFAGRLKHGMAEMSTKSPYIFVAFRVQISWVWMWTIIVCSVAHSLMVFLEPRPGRGGEDGYLAPGTLRFLEAMFIAVYALDVALKVSYMGLKTYVKKPWQK 423
            YV+DA  GRL +G   +   +    + F +    +W   I + +  H+ + F EP P  G      A      LE + +AVY++D+ LK+ YMG + YV K W +
Sbjct:   65 YVLDAMDGRLANGRGNLYFANQAKQLCFLLHSHEMWTHMIYLVAFVHAFLAFWEP-PTWGH-----ASAVCYALEFLCLAVYSIDIYLKMVYMGARVYVSKKWHR 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199645.5614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LF40_ECTSI1.630e-7670.43Putative two-pore calcium channel (Partial) (Fragm... [more]
A0A6H5KF87_9PHAE2.270e-7469.89Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S2XMD6_9STRA4.390e-1831.01Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A9VBA5_MONBE1.110e-531.43Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199645contigH-elongata_contig199645:64..1095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.2
Seed ortholog evalue1.5e-66
Seed eggNOG ortholog2880.D8LF40
EggNOG free text desc.Ion transport protein
EggNOG OGs2E9E1@1,2SFS9@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size567
Cds size567
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930125.7469537-CDS-H-elongata_contig199645:63..1971622930125.7469537-CDS-H-elongata_contig199645:63..197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199645 64..197 +
1691679290.8217351-CDS-H-elongata_contig199645:63..1971691679290.8217351-CDS-H-elongata_contig199645:63..197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199645 64..197 +
1622930125.7592237-CDS-H-elongata_contig199645:662..10951622930125.7592237-CDS-H-elongata_contig199645:662..1095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199645 663..1095 +
1691679290.833736-CDS-H-elongata_contig199645:662..10951691679290.833736-CDS-H-elongata_contig199645:662..1095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199645 663..1095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199645.5614.1prot_H-elongata_contig199645.5614.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199645 64..1095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199645.5614.1

>prot_H-elongata_contig199645.5614.1 ID=prot_H-elongata_contig199645.5614.1|Name=mRNA_H-elongata_contig199645.5614.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp
QKANKQKLKSLFKLGVSKVVKQRAEEMDRMAKKGALYVMDAFAGRLKHGM
AEMSTKSPYIFVAFRVQISWVWMWTIIVCSVAHSLMVFLEPRPGRGGEDG
YLAPGTLRFLEAMFIAVYALDVALKVSYMGLKTYVKKPWQKLMIVITFIL
AVDATGLVGVRFARALRPGEIDTKELPLLVFFCIFSIS*
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mRNA from alignment at H-elongata_contig199645:64..1095+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199645.5614.1 ID=mRNA_H-elongata_contig199645.5614.1|Name=mRNA_H-elongata_contig199645.5614.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1032bp|location=Sequence derived from alignment at H-elongata_contig199645:64..1095+ (Himanthalia elongata Himel1 dioecious)
CAGAAAGCAAACAAGCAGAAGCTTAAGAGCCTGTTCAAGCTGGGCGTCAG
CAAGGTGGTGAAGCAGAGGGCCGAGGAGATGGACCGCATGGCCAAGAAGG
GGGCGCTCTACGTCATGGACGCCTTCGCCGGCAGGTGGAACTCCTCGCAG
CTTTCTTTCTATCTCTCTCTCTCTCAATGATAATATGTTGTATTAATAGT
GCACCTAGTACATGCTTGGCTTAGCTTGGCGGTGCAGAAATTCTTAGAAT
AGATGCAAACCTCGGCCGAGGATGTTTTTTGGTTTGTTTCTAGGGCAATG
TATGTCCAGGTTCGATCGAGAGAGTGGCGCCGCGATGGAAAAACACGTGA
AGAGGGGGAGAGACATGTGCGGGCGATTGACCTGACCCAGGAAGCAATTG
TGTTTTAACTTTGGTTTGAGCACGTCACGCCAACCAACGCGGCAGGATAG
CAAGGCCACCCAAATGGTGCACCTAATCGTCCCGGCAGACCATAACACTG
CGTTTATAAGCCACCTCCGAAGAACACCCCCCCCCGTCTACCCTACGAAT
CGCCGCCTTGGGCGGCACAAAAACCGTCCCGTTTTTTTCTCGGACGCAGG
TTAAAGCACGGCATGGCGGAGATGTCCACGAAATCACCGTACATCTTCGT
GGCGTTCCGGGTGCAGATCAGCTGGGTGTGGATGTGGACGATTATCGTGT
GCAGCGTTGCCCACTCCCTTATGGTGTTCCTCGAGCCGCGGCCCGGCAGG
GGCGGCGAAGACGGGTACCTCGCTCCGGGAACGCTTCGCTTCCTCGAGGC
GATGTTCATCGCCGTCTACGCCCTGGACGTGGCGCTCAAGGTTTCTTATA
TGGGGCTCAAGACCTACGTCAAGAAGCCCTGGCAGAAGCTGATGATCGTG
ATCACCTTCATCCTCGCGGTAGACGCCACCGGGCTGGTCGGGGTGAGGTT
CGCAAGGGCTCTGCGACCTGGTGAGATAGACACGAAAGAACTGCCACTTT
TGGTGTTTTTTTGTATTTTTTCTATTAGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig199645:64..1095+

>mRNA_H-elongata_contig199645.5614.1 ID=mRNA_H-elongata_contig199645.5614.1|Name=mRNA_H-elongata_contig199645.5614.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at H-elongata_contig199645:64..1095+ (Himanthalia elongata Himel1 dioecious)
CAGAAAGCAAACAAGCAGAAGCTTAAGAGCCTGTTCAAGCTGGGCGTCAG
CAAGGTGGTGAAGCAGAGGGCCGAGGAGATGGACCGCATGGCCAAGAAGG
GGGCGCTCTACGTCATGGACGCCTTCGCCGGCAGCAGAAAGCAAACAAGC
AGAAGCTTAAGAGCCTGTTCAAGCTGGGCGTCAGCAAGGTGGTGAAGCAG
AGGGCCGAGGAGATGGACCGCATGGCCAAGAAGGGGGCGCTCTACGTCAT
GGACGCCTTCGCCGGCAGGTTAAAGCACGGCATGGCGGAGATGTCCACGA
AATCACCGTACATCTTCGTGGCGTTCCGGGTGCAGATCAGCTGGGTGTGG
ATGTGGACGATTATCGTGTGCAGCGTTGCCCACTCCCTTATGGTGTTCCT
CGAGCCGCGGCCCGGCAGGGGCGGCGAAGACGGGTACCTCGCTCCGGGAA
CGCTTCGCTTCCTCGAGGCGATGTTCATCGCCGTCTACGCCCTGGACGTG
GCGCTCAAGGTTTCTTATATGGGGCTCAAGACCTACGTCAAGAAGCCCTG
GCAGAAGCTGATGATCGTGATCACCTTCATCCTCGCGGTAGACGCCACCG
GGCTGGTCGGGGTGAGGTTCGCAAGGGCTCTGCGACCTGGTGAGATAGAC
ACGAAAGAACTGCCACTTTTGGTGTTTTTTTGTATTTTTTCTATTAGTTA
GGTTAAAGCACGGCATGGCGGAGATGTCCACGAAATCACCGTACATCTTC
GTGGCGTTCCGGGTGCAGATCAGCTGGGTGTGGATGTGGACGATTATCGT
GTGCAGCGTTGCCCACTCCCTTATGGTGTTCCTCGAGCCGCGGCCCGGCA
GGGGCGGCGAAGACGGGTACCTCGCTCCGGGAACGCTTCGCTTCCTCGAG
GCGATGTTCATCGCCGTCTACGCCCTGGACGTGGCGCTCAAGGTTTCTTA
TATGGGGCTCAAGACCTACGTCAAGAAGCCCTGGCAGAAGCTGATGATCG
TGATCACCTTCATCCTCGCGGTAGACGCCACCGGGCTGGTCGGGGTGAGG
TTCGCAAGGGCTCTGCGACCTGGTGAGATAGACACGAAAGAACTGCCACT
TTTGGTGTTTTTTTGTATTTTTTCTATTAGTTAG
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