mRNA_H-elongata_contig19960.5611.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19960.5611.1 vs. uniprot
Match: A0A6H5KS17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS17_9PHAE) HSP 1 Score: 457 bits (1177), Expect = 1.070e-153 Identity = 223/288 (77.43%), Postives = 248/288 (86.11%), Query Frame = 1
Query: 13 MLRHGLTGDWIGTFMGHKGAVWGVALDDSGLLAATASADFSARLWDAVTGDQVHEFGHNHIVKSVHFKGDRSNLATAGHEGILRIYDVASPSSDPTEITVFPGGEATPKPMRVVTKARWGHNQNTVLTGSADGFLRVFDVRSGERIRKVQMDGPVMDLEMSLDRSIATVAAGQAVHFLNTDDFSEMKRHTMPINFLNEGGASLHPGGDRFIAGGSDLWVRVFDYETGVQMECLK-------GHHGPVRCLRYAPDGKTYATGSEDGTIRLWQTK-PGVAAAATDGAAG 852
M+R+G TGDWIGTF+GHKGAVWGVALDD+GLLAATASADFSARLWDAVTG+QVHEF H HIVK+VHF DRS LATAGHEGILRI+D ASP S PTEITVFPGGE TPK RV++KARWG + NTVLTGSADGF+RV+D+RSGE+IRKVQ+ G VMDLEMS D+ IATVAAG VHF +T D SE+KRHTMPINF NEGGASLHPGG RFIAGGSDLWVRVFD++TG ++ECLK GHHGPVRCLRYAPDGKTYATGSEDGTIRLWQ+ P AAA+ G +G
Sbjct: 1 MIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPTEITVFPGGEETPKVARVISKARWGKDPNTVLTGSADGFVRVWDIRSGEKIRKVQVAGAVMDLEMSWDKKIATVAAGDTVHFFDTGDLSEVKRHTMPINFRNEGGASLHPGGKRFIAGGSDLWVRVFDFDTGAELECLKASRGRARGHHGPVRCLRYAPDGKTYATGSEDGTIRLWQSNAPAAAAASAAGTSG 288
BLAST of mRNA_H-elongata_contig19960.5611.1 vs. uniprot
Match: D8LST9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST9_ECTSI) HSP 1 Score: 411 bits (1056), Expect = 2.730e-135 Identity = 205/285 (71.93%), Postives = 228/285 (80.00%), Query Frame = 1
Query: 1 AKTPMLRHGLTGDWIGTFMGHKGAVWGVALDDSGLLAATASADFSARLWDAVTGDQVHEFGHNHIVKSVHFKGDRSNLATAGHEGILRIYDVASPSSDPTEITVFPGGEATPKPMRVVTKARWGHNQNTVLTGSADGFLRVFDVRSGERIRKVQMDGPVMDLEMSLDRSIATVAAGQAVHFLNTDDFSEMKRHTMPINFLNEGGASLHPGGDRFIAGGSDLWVRVFDYETGVQMECLKGHHGPVRCLRYAPDGKTYATGSEDGTIRLWQTK-PGVAAAATDGAAG 852
AKTPM+R+G TGDWIGTF+GHKGAVWGVALDD+GLLAATASADFSARLWDAVTG+QVHEF H HIVK+VHF DRS LATAGHEGILRI+D ASP S PTEITVFPGGE TPK RV++KARWG + NTVLTGSADGF+RV+DVRSGE+IRKVQ+ G VMDLEMS D+ IATVAAG VHF +T GG RF+AGGSDLWVRV D++TG ++ECLKGHHGPVRCLRYAPDGKTYATGSEDGTIRLWQ+ P AA A G +G
Sbjct: 43 AKTPMIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPTEITVFPGGEETPKVSRVISKARWGKDPNTVLTGSADGFVRVWDVRSGEKIRKVQVAGAVMDLEMSWDKKIATVAAGDTVHFFDT-------------------------GGKRFMAGGSDLWVRVLDFDTGAELECLKGHHGPVRCLRYAPDGKTYATGSEDGTIRLWQSNAPSAAAGAAAGTSG 302
BLAST of mRNA_H-elongata_contig19960.5611.1 vs. uniprot
Match: A0A835YS18_9STRA (WD40-repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS18_9STRA) HSP 1 Score: 343 bits (879), Expect = 8.980e-109 Identity = 165/273 (60.44%), Postives = 203/273 (74.36%), Query Frame = 1
Query: 1 AKTPMLRHGLTGDWIGTFMGHKGAVWGVALDDSGLLAATASADFSARLWDAVTGDQVHEFGHNHIVKSVHFKGDRSNLATAGHEGILRIYDVASPSSDPTEITVFPGGEATPKPMRVVTKARWGHNQNTVLTGSADGFLRVFDVRSGERIRKVQMDGPVMDLEMSLDRSIATVAAGQAVHFLNTDDFSEMKRHTMPINFLNEGGASLHPGGDRFIAGGSDLWVRVFDYETGVQMECLKGHHGPVRCLRYAPDGKTYATGSEDGTIRLWQTKPG 819
AKTPMLR G TGDWIGTF GHKGAVWGVALD ++AATASADFSARLWDA++G HE+ H HIVK V F D + LAT GHEGI+R++ VA P +P + +V E T + K RWG + +L+GS+DG +R++D R+ E +++V+++G VMD+E+S SI TVAAG V FL+ +K+H MPINF NEGGASLHP G RFIAGGSDLWVRVFD+ETG ++ECLKGHHGPVRCLRY P G +YATGSEDGTIR+W + G
Sbjct: 44 AKTPMLRRGDTGDWIGTFEGHKGAVWGVALDPQAMIAATASADFSARLWDAISGKLTHEWPHKHIVKGVDFSQDSTTLATGGHEGIVRLFQVAQPDEEPRQFSV--SSERT-----TINKVRWGLEPHQLLSGSSDGAVRMWDARTLELLKEVRVEGAVMDMEVSKPMSIITVAAGDKVTFLDARTLEVIKQHQMPINFKNEGGASLHPSGKRFIAGGSDLWVRVFDFETGAELECLKGHHGPVRCLRYTPGGLSYATGSEDGTIRIWVDENG 309
BLAST of mRNA_H-elongata_contig19960.5611.1 vs. uniprot
Match: A0A7S2XYA9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYA9_9STRA) HSP 1 Score: 328 bits (841), Expect = 4.570e-103 Identity = 161/280 (57.50%), Postives = 207/280 (73.93%), Query Frame = 1
Query: 4 KTPMLRHGLTGDWIGTFMGHKGAVWGVALDDSGLLAATASADFSARLWDAVTGDQVHEFGHNHIVKSVHFKGDRSNLATAGHEGILRIYDVASPSSDPTEITVFPGGEATPKPMRVVTKARWGHNQNTVLTGSADGFLRVFDVRS-GER-IRKVQMDGPVMDLEMSLDRSIATVAAGQAVHFLNTDDFSEMKRHTMPINFLNEGGASLHPGGDRFIAGGSDLWVRVFDYETGVQMECLKGHHGPVRCLRYAPDGKTYATGSEDGTIRLWQT--KPGVAAA 831
K PMLR G TGDWIGTF GHKGAVW LD+ LAATAS DFSA+LW+A++G+++H+F H HIVK+V F DRS L + G EG+LRI+D++ P +DP + + + VTKA WG + V+TG++DG +R +D+RS G+ +++V ++G VMD+EMS D TVAAG V+FL+ +D S +K H MP+NF EGGASLHP +FIAGGSDLWVRVFDYETG ++EC KGHHGPVRCLRY+PDG +YATGSEDGTIR+WQT KP ++A
Sbjct: 41 KLPMLRRGDTGDWIGTFEGHKGAVWCAKLDNDATLAATASGDFSAKLWNAISGEEMHQFVHRHIVKTVEFAPDRSKLISGGQEGLLRIFDLSRPEADPDQAN---HKQPDQQGSLAVTKAVWGAEADLVVTGTSDGTVRTWDLRSLGDGPVKEVSVEGAVMDMEMSRDSRTVTVAAGTQVNFLSAEDLSVLKAHQMPVNFREEGGASLHPDKTKFIAGGSDLWVRVFDYETGQELECHKGHHGPVRCLRYSPDGGSYATGSEDGTIRIWQTTLKPATSSA 317
BLAST of mRNA_H-elongata_contig19960.5611.1 vs. uniprot
Match: A0A6U3S695_9STRA (Hypothetical protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3S695_9STRA) HSP 1 Score: 298 bits (764), Expect = 2.180e-91 Identity = 147/278 (52.88%), Postives = 186/278 (66.91%), Query Frame = 1
Query: 4 KTPMLRHGLTGDWIGTFMGHKGAVWGVALDDSGLLAATASADFSARLWDAVTGDQVHEFGHNHIVKSVHFKGDRSNLATAGHEGILRIYDVASPSSDPTEITVFPGGEATPKPMRVVTKARWGHNQNTVLTGSADGFLRVFDV---RSGERIRKV----QMDGPVMDLEMSLDRSIATVAAGQAVHFLNTDDFSEMKRHTMPINFLNEGGASLHPGGDRFIAGGSDLWVRVFDYETGVQMECLKGHHGPVRCLRYAPDGKTYATGSEDGTIRLWQTKP 816
K PMLR TGDWIGTF GHKGAVW LD GLLA TAS DFS ++WDA+TG + + H HIVK++ F D +AT GHEG+LR++D+ + +T+ GE T +TK W N TVL +DG + ++V GE ++ ++D V D+E+S D TVAAG V+F + ++ S + H MPI+F +EGGASLHP G +F+AGGSDLWVRVFDYETG ++EC KGHHGPVRC+RY PDGKTYATGSEDGTIRLW+T P
Sbjct: 65 KMPMLRDAKTGDWIGTFAGHKGAVWSCRLDPLGLLAGTASGDFSVKIWDAITGSSLFTYPHKHIVKTLDFSPDSKYIATGGHEGLLRVFDLRKEKEETPILTIKQNGEKTV----TITKCNW-LNATTVLAAGSDGSINYWNVDPKHEGEEQHRLMGTLKVDAEVRDMELSKDFKTLTVAAGTKVYFFDVENKSLLCSHQMPIHFRDEGGASLHPDGKKFVAGGSDLWVRVFDYETGTELECHKGHHGPVRCVRYDPDGKTYATGSEDGTIRLWKTDP 337
BLAST of mRNA_H-elongata_contig19960.5611.1 vs. uniprot
Match: A0A7S1UTQ8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UTQ8_9STRA) HSP 1 Score: 285 bits (730), Expect = 6.050e-86 Identity = 150/294 (51.02%), Postives = 186/294 (63.27%), Query Frame = 1
Query: 4 KTPMLRHGLTGDWIGTFMGHKGAVWGVALDDSGLLAATASADFSARLWDAVTGDQVHEFGHNHIVKSVHFKGDRSNLATAGHEGILRIYDVASPSSDPTEITVFPGGEATPKPMRV---------------------VTKARWGHNQNTVLTGSADGFLRVFDVRSG---ERIRKVQMDGPVMDLEMSLDRSIATVAAGQAVHFLNTD-DFSEMKRHTMPINFLNEGGASLHPGGDRFIAGGSDLWVRVFDYETGVQMECLKGHHGPVRCLRYAPDGKTYATGSEDGTIRLWQT 810
K PM+R G+TGDWIGT+ GHKGAVW LD SG LAATAS DFSA++WDA+TG + E H HIVKS F D LAT GHEGILRIYD A ++T G+ + + +TK W + TVL + G ++ + V SG + + +Q+ V D+E S + I TVAAG V+F T+ D + + MPI+F +EGGASLHP G +F+AGGSDLWVRVFD+ETG Q+EC KGHHGP+RC RYAPDGKTYATGSEDGTIRLW+T
Sbjct: 79 KLPMMRDGMTGDWIGTWSGHKGAVWSCRLDRSGNLAATASGDFSAKVWDAITGQALWELPHKHIVKSCDFSPDSKKLATGGHEGILRIYDFAE------KVTSAKAGQKKDPILEIEQIVNNXXXXXXXXXXXXXVAITKLVW-IGRGTVLAADSSGSIQRWKVESGIPTKPLLSLQVHAEVRDMEFSEYQQILTVAAGSKVYFFETEGDMKLLHAYDMPIHFRDEGGASLHPSGKKFVAGGSDLWVRVFDFETGQQLECHKGHHGPIRCCRYAPDGKTYATGSEDGTIRLWKT 365
BLAST of mRNA_H-elongata_contig19960.5611.1 vs. uniprot
Match: B8CFL5_THAPS (WD40-repeat protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFL5_THAPS) HSP 1 Score: 280 bits (716), Expect = 1.830e-84 Identity = 141/279 (50.54%), Postives = 183/279 (65.59%), Query Frame = 1
Query: 4 KTPMLRHGLTGDWIGTFMGHKGAVWGVALDDSGLLAATASADFSARLWDAVTGDQVHEFGHNHIVKSVHFKGDRSNLATAGHEGILRIYDVASPSSDPTEITVFPGGEATPKPMRVVTKARWGHNQNTVLTGSADGFLRVFDVRSGERI----RKVQMDGPVMDLEM----SLDRSIATVAAGQAVHFLNTDDFSEMKRHTMPINFLNEGGASLHPGGDRFIAGGSDLWVRVFDYETGVQMECLKGHHGPVRCLRYAPDGKTYATGSEDGTIRLWQTKP 816
K PM+R +GDWIGTF GHKGAVW LD + L ATAS DFS ++WDA+TG +H F H H+VKS + D LAT G+EGILR++D+ P P E + K + ++K W N +TVL +DG +R ++V + + R +Q+ V D+E+ S +++I TVAAG V F + + + MPI+F EGGASLHP G +FIAGGSDLWVRVFD+E+G ++EC KGHHGPVRCLRY PDGK+YATGSEDGTIRLW+T P
Sbjct: 56 KCPMVRDAESGDWIGTFKGHKGAVWSCRLDPAAFLGATASGDFSVKVWDAITGSPLHSFPHKHVVKSCDWSPDSKRLATGGNEGILRVFDIVHPEKAPLEFV------QSEKEVVSISKCNWIDN-HTVLAACSDGSIRFWNVDASDPTQQLTRTLQVKDGVRDMELQALSSNNKTILTVAAGDKVTFFDMATGDMIHSYKMPIHFREEGGASLHPSGAKFIAGGSDLWVRVFDFESGEELECHKGHHGPVRCLRYHPDGKSYATGSEDGTIRLWKTDP 327
BLAST of mRNA_H-elongata_contig19960.5611.1 vs. uniprot
Match: A0A1Z5KMR3_FISSO (Serine-threonine kinase receptor-associated protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KMR3_FISSO) HSP 1 Score: 279 bits (713), Expect = 4.430e-84 Identity = 141/280 (50.36%), Postives = 180/280 (64.29%), Query Frame = 1
Query: 4 KTPMLRHGLTGDWIGTFMGHKGAVWGVALDDSGLLAATASADFSARLWDAVTGDQVHEFGHNHIVKSVHFKGDRSNLATAGHEGILRIYDVASPSSDPTEITVFPGGEATPKPMRVVTKARWGHNQNTVLTGSADGFLRVFDVRS----GERIRKVQMDGPVMDLEMSL-----DRSIATVAAGQAVHFLNTDDFSEMKRHTMPINFLNEGGASLHPGGDRFIAGGSDLWVRVFDYETGVQMECLKGHHGPVRCLRYAPDGKTYATGSEDGTIRLWQTKP 816
K PM+R G+TGDWIGTF+GHKGAVW LD SG LAATAS D+S +WDA+TG +H+ H HIVK+ F + LAT GHEGI+R+YD+ P + EI G P + K W N N +L G DG +R + + S G+ I ++ + V +M + R I +VAAG V+F N D S M + MP++F EGG SLHP G+ F+AGGSDLWVRVF TG ++EC KGHHGP+RCLRY+PDG TYA+GSEDGTIR+W+T P
Sbjct: 50 KKPMVRDGITGDWIGTFVGHKGAVWCCRLDPSGNLAATASGDYSVHVWDAITGKDLHQLPHKHIVKTCDFTPNSRWLATGGHEGIIRVYDLLHPKNAALEIAQSSG------PKIGINKCLWISN-NVLLAGGTDGCIRFWQIDSLSSPGKLIHVLKTENGVEIRDMDITSTTASRQILSVAAGDKVYFFNLADRSLMHSYKMPVHFREEGGVSLHPSGEMFVAGGSDLWVRVFATATGQELECHKGHHGPIRCLRYSPDGSTYASGSEDGTIRIWKTHP 322
BLAST of mRNA_H-elongata_contig19960.5611.1 vs. uniprot
Match: K3WFN9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFN9_GLOUD) HSP 1 Score: 278 bits (710), Expect = 2.530e-83 Identity = 147/292 (50.34%), Postives = 193/292 (66.10%), Query Frame = 1
Query: 4 KTPMLRHGLTGDWIGTFMGHKGAVWGVALDDSGLLAATASADFSARLWDAVTGDQVHEFGHNHIVKSVHFKGDRSNLATAGHEGILRIYDVAS--------PSSDPTEITVFPGGEATPKPMRVVTKARWGH----NQNTVLTGSADGFLRVFDVRSGERIRKVQMD-GPVMDLEMSLDRSIATVAAGQAVHFLNT-DDFSEMKRHTMPINFLNEGGASLHPGGDRFIAGGSDLWVRVFDYETGVQMECLKGHHGPVRCLRYAPDGKTYATGSEDGTIRLWQTKPGVAAAAT 837
K PMLR TGDWIGTF GHKGAVW +D S AAT SADFS + WDA++GD + F H HIVKSV F D + L TAGHE +LR+YD+ + S T I V P TP + + TK + + +TG DG + V+++ S +++ + ++D G VMD+E S S+ TVAAG+ V+F + ++F+ ++ MPI+F EGGASLHP D+FIAGGSD WVRVFDY+TG +EC KGHHGPVRCLRY+P G+++ATGSEDGTIR+WQ+ AAAA+
Sbjct: 49 KLPMLRRADTGDWIGTFEGHKGAVWSATIDASAQFAATGSADFSVKFWDALSGDVITTFEHKHIVKSVAFTPDGARLLTAGHEKLLRVYDLLTVKEQFEHYKSEGRTGIFVPP----TPPTLELATKDQIRKVVVISDALAVTGEVDGTITVWNLESAQKVHEFKVDAGGVMDMEASRKNSVLTVAAGKKVYFYDVPNNFALIRSFMMPISFAEEGGASLHPHEDKFIAGGSDTWVRVFDYQTGEMLECHKGHHGPVRCLRYSPRGESFATGSEDGTIRIWQSDSKSAAAAS 336
BLAST of mRNA_H-elongata_contig19960.5611.1 vs. uniprot
Match: M4BK16_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BK16_HYAAE) HSP 1 Score: 276 bits (707), Expect = 7.410e-83 Identity = 141/284 (49.65%), Postives = 182/284 (64.08%), Query Frame = 1
Query: 4 KTPMLRHGLTGDWIGTFMGHKGAVWGVALDDSGLLAATASADFSARLWDAVTGDQVHEFGHNHIVKSVHFKGDRSNLATAGHEGILRIYDVASPSSDPTEITVFPGGEATPKPMRVVTKARWGH-------NQNTVLTGSADGFLRVFDVRSGERIRKVQMDGPVMDLEMSLDRSIATVAAGQAVHFLNTD-DFSEMKRHTMPINFLNEGGASLHPGGDRFIAGGSDLWVRVFDYETGVQMECLKGHHGPVRCLRYAPDGKTYATGSEDGTIRLWQTKPGVAAA 831
K PMLRHG +GDWIGTF GHKGAVW LD+ AAT SADFS ++WDA TGD V H H+VK V F D + L TAGHE ++R++D+ ++ GG P P + H + N +TG DG L V+D+ + + R+ +D VMD+E+S + + TVAAG+ VHF N D DF+ ++ MPI+F EGGASLHP ++F+AGGSD WVRVFD+E+G +E KGHHGPVRCLRY+P G ++ATGSEDGTIR+WQ AAA
Sbjct: 55 KLPMLRHGDSGDWIGTFEGHKGAVWSAKLDNEAAFAATGSADFSVKIWDARTGDVVTTLEHKHVVKCVAFTRDDTRLVTAGHEKLVRVFDITQVKEQLKQLKTEGGGVIEP-PQPLGEMQTGQHIRKVVVLSNNVAVTGEVDGTLTVWDLDTFTQKRQFTVDAGVMDMEVSREGKVLTVAAGKQVHFYNVDEDFALLRSFAMPISFAEEGGASLHPIENKFVAGGSDTWVRVFDFESGELLETHKGHHGPVRCLRYSPSGGSFATGSEDGTIRIWQNDSTSAAA 337 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19960.5611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19960.5611.1 >prot_H-elongata_contig19960.5611.1 ID=prot_H-elongata_contig19960.5611.1|Name=mRNA_H-elongata_contig19960.5611.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=281bp MLRHGLTGDWIGTFMGHKGAVWGVALDDSGLLAATASADFSARLWDAVTGback to top mRNA from alignment at H-elongata_contig19960:1007..6309+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19960.5611.1 ID=mRNA_H-elongata_contig19960.5611.1|Name=mRNA_H-elongata_contig19960.5611.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5303bp|location=Sequence derived from alignment at H-elongata_contig19960:1007..6309+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19960:1007..6309+ >mRNA_H-elongata_contig19960.5611.1 ID=mRNA_H-elongata_contig19960.5611.1|Name=mRNA_H-elongata_contig19960.5611.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1686bp|location=Sequence derived from alignment at H-elongata_contig19960:1007..6309+ (Himanthalia elongata Himel1 dioecious)back to top |