mRNA_H-elongata_contig199516.5610.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199516.5610.1
Unique NamemRNA_H-elongata_contig199516.5610.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig199516.5610.1 vs. uniprot
Match: D7G1F5_ECTSI (Amino acid/polyamine transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F5_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.180e-15
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:   52 LQTLPLFVFCFTCHQNIFTICNEIVKPTPARVDSVIGESILI 177
            LQTLP+FVFCFTCHQNIFTICNEIV+PTPARVD+VI  S+ +
Sbjct:  321 LQTLPIFVFCFTCHQNIFTICNEIVRPTPARVDTVIACSMAV 362
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BLAST of mRNA_H-elongata_contig199516.5610.1 vs. uniprot
Match: A0A7S1TS32_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TS32_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.030e-9
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   25 VLPPSPSLPLQTLPLFVFCFTCHQNIFTICNEIVKPTPARVDSVIGESILILF 183
            V+P SP      L LFVFCFTCHQNIFTICNEI + T   V+ VI  ++ + F
Sbjct:  301 VIPDSPKDTFAVLTLFVFCFTCHQNIFTICNEIKRNTRKNVNRVIFIAVSMCF 353
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BLAST of mRNA_H-elongata_contig199516.5610.1 vs. uniprot
Match: A0A7S2WEX7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEX7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.340e-8
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   61 LPLFVFCFTCHQNIFTICNEIVKPTPARVDSVIGESILILFY 186
            L +FVF FTCHQNIF I NE+  PTP RVD VI  SI++ F+
Sbjct:  199 LTVFVFGFTCHQNIFAIANEMKLPTPRRVDRVIVSSIVVAFF 240
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BLAST of mRNA_H-elongata_contig199516.5610.1 vs. uniprot
Match: F0XYI5_AURAN (Uncharacterized protein AOT5 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYI5_AURAN)

HSP 1 Score: 57.8 bits (138), Expect = 3.360e-8
Identity = 22/39 (56.41%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   55 QTLPLFVFCFTCHQNIFTICNEIVKPTPARVDSVIGESI 171
            +T+ +F+F +TCHQNIF + NEI +PTPAR+D+V+  SI
Sbjct:  219 KTMTIFIFGYTCHQNIFAVVNEIKRPTPARLDAVVATSI 257
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BLAST of mRNA_H-elongata_contig199516.5610.1 vs. uniprot
Match: A0A8J5XBN8_DIALT (Aa_trans domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XBN8_DIALT)

HSP 1 Score: 56.2 bits (134), Expect = 1.190e-7
Identity = 23/42 (54.76%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   52 LQTLPLFVFCFTCHQNIFTICNEIVKPTPARVDSVIGESILI 177
            L+ L +FVF FTC QN+F++ NE+ KPT AR+D V+G S+L+
Sbjct:  210 LRVLSIFVFGFTCQQNVFSVVNELRKPTLARIDLVVGASVLL 251
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BLAST of mRNA_H-elongata_contig199516.5610.1 vs. uniprot
Match: A0A1S8VTB3_9FUNG (Aa_trans domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VTB3_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 2.210e-7
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   52 LQTLPLFVFCFTCHQNIFTICNEIVKPTPARVDSVIGESILI 177
            L  LP+FVF FTCHQNIF+I NE+V  +P ++ +VI  SI+I
Sbjct:  252 LTALPVFVFAFTCHQNIFSIYNELVDNSPKKIHTVISGSIII 293
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BLAST of mRNA_H-elongata_contig199516.5610.1 vs. uniprot
Match: A0A7S4FZE0_9EUGL (Hypothetical protein n=3 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FZE0_9EUGL)

HSP 1 Score: 54.7 bits (130), Expect = 4.130e-7
Identity = 24/59 (40.68%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   19 LFVLPP-SPSLPLQTLPLFVFCFTCHQNIFTICNEIVKPTPARVDS--VIGESILILFY 186
            +++ PP +P   L+ +P+F+F +TCHQN FT+ NE+ +PT +R D+  ++  S   LFY
Sbjct:  275 IYITPPHNPFAILKVIPIFIFGYTCHQNTFTLVNELKRPTQSRCDTFIILAVSTCCLFY 333
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BLAST of mRNA_H-elongata_contig199516.5610.1 vs. uniprot
Match: A0A177W6V7_BATDL (Aa_trans domain-containing protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177W6V7_BATDL)

HSP 1 Score: 54.3 bits (129), Expect = 5.670e-7
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   61 LPLFVFCFTCHQNIFTICNEIVKPTPARVDSVIGESIL 174
            LP+FVF FTCHQNIF++ NE++  +P +++SVI  SIL
Sbjct:  321 LPVFVFAFTCHQNIFSVYNELIDNSPRKIESVIKGSIL 358
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BLAST of mRNA_H-elongata_contig199516.5610.1 vs. uniprot
Match: X6NQU2_RETFI (Amino acid/polyamine transporter n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NQU2_RETFI)

HSP 1 Score: 53.9 bits (128), Expect = 7.310e-7
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   52 LQTLPLFVFCFTCHQNIFTICNEIVKPTPARVDSVIGESILILF 183
            L  LPLF+F FTCHQN FTI NE+  PT AR++ V+  ++L  F
Sbjct:   93 LGVLPLFIFGFTCHQNAFTITNELKSPTHARLNIVVYSAMLCCF 136
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BLAST of mRNA_H-elongata_contig199516.5610.1 vs. uniprot
Match: R1FE80_EMIHU (Aromatic amino acid permease n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FE80_EMIHU)

HSP 1 Score: 53.9 bits (128), Expect = 7.690e-7
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   37 SPSLPLQTLPLFVFCFTCHQNIFTICNEIVKPTPAR 144
            +PS  L  LPLFVF +TCHQNIF+I NE+  PTP R
Sbjct:  227 NPSQTLHALPLFVFSYTCHQNIFSITNELSDPTPQR 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199516.5610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1F5_ECTSI1.180e-1580.95Amino acid/polyamine transporter n=2 Tax=Ectocarpu... [more]
A0A7S1TS32_9STRA2.030e-954.72Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WEX7_9STRA3.340e-861.90Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0XYI5_AURAN3.360e-856.41Uncharacterized protein AOT5 n=1 Tax=Aureococcus a... [more]
A0A8J5XBN8_DIALT1.190e-754.76Aa_trans domain-containing protein n=1 Tax=Diacron... [more]
A0A1S8VTB3_9FUNG2.210e-757.14Aa_trans domain-containing protein n=1 Tax=Batrach... [more]
A0A7S4FZE0_9EUGL4.130e-740.68Hypothetical protein n=3 Tax=Eutreptiella gymnasti... [more]
A0A177W6V7_BATDL5.670e-757.89Aa_trans domain-containing protein n=2 Tax=Batrach... [more]
X6NQU2_RETFI7.310e-754.55Amino acid/polyamine transporter n=1 Tax=Reticulom... [more]
R1FE80_EMIHU7.690e-763.89Aromatic amino acid permease n=3 Tax=Emiliania hux... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199516contigH-elongata_contig199516:817..1005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog2880.D7G1F5
Preferred nameAVT7
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003333,GO:0003674,GO:0005215,GO:0005290,GO:0005302,GO:0005310,GO:0005313,GO:0005326,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006835,GO:0006836,GO:0006855,GO:0006865,GO:0006950,GO:0006995,GO:0007034,GO:0007154,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0015075,GO:0015171,GO:0015172,GO:0015173,GO:0015174,GO:0015175,GO:0015179,GO:0015181,GO:0015183,GO:0015189,GO:0015194,GO:0015238,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015800,GO:0015801,GO:0015802,GO:0015804,GO:0015807,GO:0015809,GO:0015813,GO:0015817,GO:0015819,GO:0015825,GO:0015828,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0022857,GO:0022889,GO:0031090,GO:0031166,GO:0031224,GO:0031300,GO:0031301,GO:0031310,GO:0031667,GO:0031668,GO:0031669,GO:0032329,GO:0032974,GO:0032975,GO:0033554,GO:0034220,GO:0034486,GO:0034490,GO:0034491,GO:0042221,GO:0042493,GO:0042594,GO:0043090,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043562,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045117,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0051938,GO:0055085,GO:0061459,GO:0070778,GO:0071496,GO:0071627,GO:0071628,GO:0071702,GO:0071705,GO:0071944,GO:0089709,GO:0090454,GO:0090513,GO:0090514,GO:0090515,GO:0090516,GO:0090517,GO:0090518,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:0098852,GO:1901474,GO:1901481,GO:1901482,GO:1902022,GO:1902023,GO:1902024,GO:1902475,GO:1903400,GO:1903401,GO:1903825,GO:1903826,GO:1905039,GO:1990822
EggNOG free text desc.amino acid
EggNOG OGsCOG0814@1,KOG1305@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size189
Cds size189
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930125.2628803-CDS-H-elongata_contig199516:816..10051622930125.2628803-CDS-H-elongata_contig199516:816..1005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199516 817..1005 +
1691679290.5924153-CDS-H-elongata_contig199516:816..10051691679290.5924153-CDS-H-elongata_contig199516:816..1005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199516 817..1005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199516.5610.1prot_H-elongata_contig199516.5610.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199516 817..1005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199516.5610.1

>prot_H-elongata_contig199516.5610.1 ID=prot_H-elongata_contig199516.5610.1|Name=mRNA_H-elongata_contig199516.5610.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MSFLLFLFVLPPSPSLPLQTLPLFVFCFTCHQNIFTICNEIVKPTPARVD
SVIGESILILFY*
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mRNA from alignment at H-elongata_contig199516:817..1005+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199516.5610.1 ID=mRNA_H-elongata_contig199516.5610.1|Name=mRNA_H-elongata_contig199516.5610.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig199516:817..1005+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTTCTTGTTGTTCCTTTTTGTGCTCCCTCCTTCCCCCTCTCTTCC
TCTGCAGACCCTCCCCCTGTTCGTATTTTGCTTCACCTGTCACCAAAACA
TCTTCACTATCTGCAACGAGATCGTCAAGCCCACCCCAGCAAGGGTCGAC
TCCGTCATCGGTGAGTCAATTTTGATTCTCTTTTACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig199516:817..1005+

>mRNA_H-elongata_contig199516.5610.1 ID=mRNA_H-elongata_contig199516.5610.1|Name=mRNA_H-elongata_contig199516.5610.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig199516:817..1005+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTTCTTGTTGTTCCTTTTTGTGCTCCCTCCTTCCCCCTCTCTTCC
TCTGCAGACCCTCCCCCTGTTCGTATTTTGCTTCACCTGTCACCAAAACA
TCTTCACTATCTGCAACGAGATCGTCAAGCCCACCCCAGCAAGGGTCGAC
TCCGTCATCGGTGAGTCAATTTTGATTCTCTTTTACTGAATGTCGTTCTT
GTTGTTCCTTTTTGTGCTCCCTCCTTCCCCCTCTCTTCCTCTGCAGACCC
TCCCCCTGTTCGTATTTTGCTTCACCTGTCACCAAAACATCTTCACTATC
TGCAACGAGATCGTCAAGCCCACCCCAGCAAGGGTCGACTCCGTCATCGG
TGAGTCAATTTTGATTCTCTTTTACTGA
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