mRNA_H-elongata_contig199435.5609.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199435.5609.1
Unique NamemRNA_H-elongata_contig199435.5609.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig199435.5609.1 vs. uniprot
Match: A0A6H5KF78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF78_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.010e-47
Identity = 120/273 (43.96%), Postives = 158/273 (57.88%), Query Frame = 1 
Query:    1 MARRAAE-RPIECTFTPVITKKASFRKNEKRVSRGYDSDD-----------------PCASEAEKVSTFDSLYLDAKRRREKMDALSDSRMKEAIVRASPVITTRGRKASAEPLDVRLKQNTERWARRREELEDRKLTLEHVGCTFSPNFNIGCTASAPRMKLARSGSGNLGEN---------SSFVERTTRFQAEREMKLEKLKQEALEKERAEATFQPKITACGGE---DVGAQGADVFDRLAKAATAQEVNKSARKDELWKQELEKYNDF 729
            +ARRA E RP ECTFTP I+K+       + + RGY SD                            TFD+LY DAKRR+ KM+AL  +  +E   R SPVIT  GR+A+  P+DVR+K++ ERW RR +ELE++K   E  GCTF PNF+IG ++SAPRM+  RS                  +FV R+  F   RE  ++KLK+EA E+ERA ATF+P I   GG    D  +  ADVF+RL +AA  QE+NK+A K+E  K+E E+YNDF
Sbjct:  812 LARRAEEERPRECTFTPEISKRG------RSLVRGYSSDGGGGEXXXXXXXXXXXXXXXXXXXSLFDTFDALYQDAKRRQAKMEALKGAH-EEVGRRTSPVITAMGRQATGVPIDVRMKEDAERWVRRFQELEEKKAEKEKEGCTFMPNFSIGRSSSAPRMRPRRSNGXXXXXXXXXXXXXXIEAFVARSAIFLEARERNMKKLKEEAEERERALATFKPSILPWGGRSAADDASAAADVFERLLRAAENQEMNKAALKEEFLKKEREQYNDF 1077
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BLAST of mRNA_H-elongata_contig199435.5609.1 vs. uniprot
Match: D8LNB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB8_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 2.040e-45
Identity = 119/277 (42.96%), Postives = 155/277 (55.96%), Query Frame = 1 
Query:    1 MARRAAE-RPIECTFTPVITKKASFRKNEKRVSRGYDSDDPCASEAEKV-------------------------STFDSLYLDAKRRREKMDALSDSRMKEAIVRASPVITTRGRKASAEPLDVRLKQNTERWARRREELEDRKLTLEHVGCTFSPNFNIGCTASAPRMKLARSGSGNLGEN-----SSFVERTTRFQAEREMKLEKLKQEALEKERAEATFQPKITACGG---EDVGAQGADVFDRLAKAATAQEVNKSARKDELWKQELEKYNDF 729
            +ARRA E +P ECTFTP I+K+       + + RGY  D                                    TFD+LY DAKRR+ KM+AL     +E   R SPVIT  GR+A+  P+DVR+K++ ERW RR +ELE++K   E  GCTF PNF+IG ++SAPRM+  RS              +FV R+  F   RE  +EKLKQEA E+ERA ATF+P I   GG    D  +  ADVF+RL +AA  QE+NK+A K+E  K+E E+ NDF
Sbjct:  802 LARRAEEEKPRECTFTPEISKRG------RSLVRGYSGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFDTFDALYQDAKRRQAKMEALKAH--EEVGTRTSPVITAMGRQATGVPVDVRMKEDAERWVRRFQELEEKKAEKEKEGCTFMPNFSIGRSSSAPRMRPRRSNXXXXXXXXXXGIEAFVARSAIFLETRERNMEKLKQEAEERERALATFKPSILPWGGGSAADDASSAADVFERLLRAAENQEMNKAALKEEFLKKEREQNNDF 1070
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199435.5609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF78_9PHAE2.010e-4743.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNB8_ECTSI2.040e-4542.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199435contigH-elongata_contig199435:69..800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size732
Cds size732
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930125.2140734-CDS-H-elongata_contig199435:68..8001622930125.2140734-CDS-H-elongata_contig199435:68..800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199435 69..800 +
1691679290.582927-CDS-H-elongata_contig199435:68..8001691679290.582927-CDS-H-elongata_contig199435:68..800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199435 69..800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199435.5609.1prot_H-elongata_contig199435.5609.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199435 69..800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199435.5609.1

>prot_H-elongata_contig199435.5609.1 ID=prot_H-elongata_contig199435.5609.1|Name=mRNA_H-elongata_contig199435.5609.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=244bp
MARRAAERPIECTFTPVITKKASFRKNEKRVSRGYDSDDPCASEAEKVST
FDSLYLDAKRRREKMDALSDSRMKEAIVRASPVITTRGRKASAEPLDVRL
KQNTERWARRREELEDRKLTLEHVGCTFSPNFNIGCTASAPRMKLARSGS
GNLGENSSFVERTTRFQAEREMKLEKLKQEALEKERAEATFQPKITACGG
EDVGAQGADVFDRLAKAATAQEVNKSARKDELWKQELEKYNDFK
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mRNA from alignment at H-elongata_contig199435:69..800+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199435.5609.1 ID=mRNA_H-elongata_contig199435.5609.1|Name=mRNA_H-elongata_contig199435.5609.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=732bp|location=Sequence derived from alignment at H-elongata_contig199435:69..800+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCGGCGTGCGGCGGAGAGGCCGATAGAGTGCACGTTTACCCCGGT
GATTACGAAAAAAGCCTCCTTTCGAAAGAACGAGAAGCGGGTCTCTCGTG
GATATGACAGCGATGACCCCTGCGCCAGTGAAGCCGAGAAGGTATCAACT
TTTGATTCCTTGTATCTCGACGCAAAGCGACGGCGGGAGAAGATGGACGC
CCTGTCTGATTCTCGCATGAAGGAGGCAATTGTTAGGGCTTCGCCCGTCA
TCACCACACGTGGCCGGAAAGCCTCGGCCGAACCTTTAGATGTAAGACTA
AAGCAAAATACTGAGCGCTGGGCCCGCCGACGGGAAGAGCTCGAAGATAG
GAAGCTCACGCTGGAGCACGTGGGTTGCACGTTCAGCCCAAACTTCAACA
TTGGGTGCACCGCTTCTGCACCGCGGATGAAGCTGGCTCGAAGTGGTAGC
GGCAACCTCGGGGAGAACTCGTCGTTTGTCGAAAGAACCACCAGGTTCCA
GGCCGAGCGCGAAATGAAGTTAGAAAAGCTAAAGCAGGAGGCCTTAGAGA
AGGAGCGTGCTGAGGCGACCTTCCAGCCGAAGATCACCGCATGCGGAGGC
GAAGACGTCGGAGCGCAGGGCGCCGACGTGTTCGACCGCCTGGCGAAGGC
GGCCACCGCCCAGGAGGTGAACAAGTCCGCGCGGAAAGACGAGCTGTGGA
AGCAGGAGCTCGAGAAGTATAACGACTTCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig199435:69..800+

>mRNA_H-elongata_contig199435.5609.1 ID=mRNA_H-elongata_contig199435.5609.1|Name=mRNA_H-elongata_contig199435.5609.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1464bp|location=Sequence derived from alignment at H-elongata_contig199435:69..800+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCGGCGTGCGGCGGAGAGGCCGATAGAGTGCACGTTTACCCCGGT
GATTACGAAAAAAGCCTCCTTTCGAAAGAACGAGAAGCGGGTCTCTCGTG
GATATGACAGCGATGACCCCTGCGCCAGTGAAGCCGAGAAGGTATCAACT
TTTGATTCCTTGTATCTCGACGCAAAGCGACGGCGGGAGAAGATGGACGC
CCTGTCTGATTCTCGCATGAAGGAGGCAATTGTTAGGGCTTCGCCCGTCA
TCACCACACGTGGCCGGAAAGCCTCGGCCGAACCTTTAGATGTAAGACTA
AAGCAAAATACTGAGCGCTGGGCCCGCCGACGGGAAGAGCTCGAAGATAG
GAAGCTCACGCTGGAGCACGTGGGTTGCACGTTCAGCCCAAACTTCAACA
TTGGGTGCACCGCTTCTGCACCGCGGATGAAGCTGGCTCGAAGTGGTAGC
GGCAACCTCGGGGAGAACTCGTCGTTTGTCGAAAGAACCACCAGGTTCCA
GGCCGAGCGCGAAATGAAGTTAGAAAAGCTAAAGCAGGAGGCCTTAGAGA
AGGAGCGTGCTGAGGCGACCTTCCAGCCGAAGATCACCGCATGCGGAGGC
GAAGACGTCGGAGCGCAGGGCGCCGACGTGTTCGACCGCCTGGCGAAGGC
GGCCACCGCCCAGGAGGTGAACAAGTCCGCGCGGAAAGACGAGCTGTGGA
AGCAGGAGCTCGAGAAGTATAACGACTTCAAGATGGCTCGGCGTGCGGCG
GAGAGGCCGATAGAGTGCACGTTTACCCCGGTGATTACGAAAAAAGCCTC
CTTTCGAAAGAACGAGAAGCGGGTCTCTCGTGGATATGACAGCGATGACC
CCTGCGCCAGTGAAGCCGAGAAGGTATCAACTTTTGATTCCTTGTATCTC
GACGCAAAGCGACGGCGGGAGAAGATGGACGCCCTGTCTGATTCTCGCAT
GAAGGAGGCAATTGTTAGGGCTTCGCCCGTCATCACCACACGTGGCCGGA
AAGCCTCGGCCGAACCTTTAGATGTAAGACTAAAGCAAAATACTGAGCGC
TGGGCCCGCCGACGGGAAGAGCTCGAAGATAGGAAGCTCACGCTGGAGCA
CGTGGGTTGCACGTTCAGCCCAAACTTCAACATTGGGTGCACCGCTTCTG
CACCGCGGATGAAGCTGGCTCGAAGTGGTAGCGGCAACCTCGGGGAGAAC
TCGTCGTTTGTCGAAAGAACCACCAGGTTCCAGGCCGAGCGCGAAATGAA
GTTAGAAAAGCTAAAGCAGGAGGCCTTAGAGAAGGAGCGTGCTGAGGCGA
CCTTCCAGCCGAAGATCACCGCATGCGGAGGCGAAGACGTCGGAGCGCAG
GGCGCCGACGTGTTCGACCGCCTGGCGAAGGCGGCCACCGCCCAGGAGGT
GAACAAGTCCGCGCGGAAAGACGAGCTGTGGAAGCAGGAGCTCGAGAAGT
ATAACGACTTCAAG
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