mRNA_H-elongata_contig199412.5607.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199412.5607.1
Unique NamemRNA_H-elongata_contig199412.5607.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199412.5607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199412contigH-elongata_contig199412:719..1103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size385
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199412.5607.1prot_H-elongata_contig199412.5607.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199412 732..1037 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930125.036293-UTR-H-elongata_contig199412:718..7311622930125.036293-UTR-H-elongata_contig199412:718..731Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig199412 719..731 +
1691679290.5286818-UTR-H-elongata_contig199412:718..7311691679290.5286818-UTR-H-elongata_contig199412:718..731Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig199412 719..731 +
1622930125.0608714-UTR-H-elongata_contig199412:1037..11031622930125.0608714-UTR-H-elongata_contig199412:1037..1103Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig199412 1038..1103 +
1691679290.546665-UTR-H-elongata_contig199412:1037..11031691679290.546665-UTR-H-elongata_contig199412:1037..1103Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig199412 1038..1103 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930125.0505779-CDS-H-elongata_contig199412:731..10371622930125.0505779-CDS-H-elongata_contig199412:731..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199412 732..1037 +
1691679290.5375643-CDS-H-elongata_contig199412:731..10371691679290.5375643-CDS-H-elongata_contig199412:731..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199412 732..1037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199412.5607.1

>prot_H-elongata_contig199412.5607.1 ID=prot_H-elongata_contig199412.5607.1|Name=mRNA_H-elongata_contig199412.5607.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MMKESAAIRARARDFVQHVVEVKMSWVCTRIEVESVVKTFRKNGVGTKGE
RRPRFFKNYICLYTIYYALPYYTVLYYTLLYLVYYRNSLSPPRGGDLLLL
F*
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mRNA from alignment at H-elongata_contig199412:719..1103+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199412.5607.1 ID=mRNA_H-elongata_contig199412.5607.1|Name=mRNA_H-elongata_contig199412.5607.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=385bp|location=Sequence derived from alignment at H-elongata_contig199412:719..1103+ (Himanthalia elongata Himel1 dioecious)
GGGATGATAAATCATGATGAAAGAAAGCGCAGCCATTCGGGCGCGCGCGC
GTGATTTCGTGCAACACGTGGTTGAGGTTAAAATGTCATGGGTGTGTACT
CGTATCGAAGTCGAGAGTGTGGTTAAAACGTTTCGAAAAAATGGCGTGGG
TACGAAAGGGGAGAGAAGGCCTCGCTTCTTCAAAAATTACATATGTTTGT
ATACGATTTACTATGCCCTACCATATTATACTGTACTATACTATACTCTA
CTCTACCTGGTATACTACCGTAATTCCCTGAGTCCCCCCCGGGGCGGGGA
TCTTTTATTATTATTTTGAATCAACCTGTCTGGGGAAAATCGCGTCTAGG
GGGGGGGGGAAAAAAAGCAAGCCACCCCCAGTACC
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Coding sequence (CDS) from alignment at H-elongata_contig199412:719..1103+

>mRNA_H-elongata_contig199412.5607.1 ID=mRNA_H-elongata_contig199412.5607.1|Name=mRNA_H-elongata_contig199412.5607.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig199412:719..1103+ (Himanthalia elongata Himel1 dioecious)
ATGATGAAAGAAAGCGCAGCCATTCGGGCGCGCGCGCGTGATTTCGTGCA
ACACGTGGTTGAGGTTAAAATGTCATGGGTGTGTACTCGTATCGAAGTCG
AGAGTGTGGTTAAAACGTTTCGAAAAAATGGCGTGGGTACGAAAGGGGAG
AGAAGGCCTCGCTTCTTCAAAAATTACATATGTTTGTATACGATTTACTA
TGCCCTACCATATTATACTGTACTATACTATACTCTACTCTACCTGGTAT
ACTACCGTAATTCCCTGAGTCCCCCCCGGGGCGGGGATCTTTTATTATTA
TTTTGAATGATGAAAGAAAGCGCAGCCATTCGGGCGCGCGCGCGTGATTT
CGTGCAACACGTGGTTGAGGTTAAAATGTCATGGGTGTGTACTCGTATCG
AAGTCGAGAGTGTGGTTAAAACGTTTCGAAAAAATGGCGTGGGTACGAAA
GGGGAGAGAAGGCCTCGCTTCTTCAAAAATTACATATGTTTGTATACGAT
TTACTATGCCCTACCATATTATACTGTACTATACTATACTCTACTCTACC
TGGTATACTACCGTAATTCCCTGAGTCCCCCCCGGGGCGGGGATCTTTTA
TTATTATTTTGA
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