mRNA_H-elongata_contig199409.5606.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199409.5606.1
Unique NamemRNA_H-elongata_contig199409.5606.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig199409.5606.1 vs. uniprot
Match: A0A6H5KFD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD1_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.520e-38
Identity = 67/94 (71.28%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:    1 MRVVIQRVKQASVTMVNEDAS------NTLVSEIGKGIVCLVGVHEGDERAHAEWMCKQIVGAKMFEGMSEENALKRWRSSVKQNGFEVLLVSQ 264
            MRVV+QRVK+ASV + ++DA       +T+VSEIGKGI+CLVGV EGDER HAEW+CKQIV AK+FEGMSE NA K+WRS+VKQNGFE+LLVSQ
Sbjct:    1 MRVVVQRVKRASVVVEHKDADGTSLEPSTVVSEIGKGILCLVGVKEGDERGHAEWICKQIVTAKLFEGMSEANADKKWRSNVKQNGFEILLVSQ 94
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BLAST of mRNA_H-elongata_contig199409.5606.1 vs. uniprot
Match: D7FZS1_ECTSI (D-aminoacyl-tRNA deacylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS1_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 2.700e-36
Identity = 65/94 (69.15%), Postives = 78/94 (82.98%), Query Frame = 1 
Query:    1 MRVVIQRVKQASVTMVNEDASNT------LVSEIGKGIVCLVGVHEGDERAHAEWMCKQIVGAKMFEGMSEENALKRWRSSVKQNGFEVLLVSQ 264
            MRVV+QRVK+ASV + ++D   T      +VSEIGKGI+CLVGV +GDE+ HAEW+CKQIV AK+FEGMSE NA KRWRS+VKQNGFE+LLVSQ
Sbjct:    1 MRVVVQRVKRASVAVEHKDGDGTSSEPSSVVSEIGKGILCLVGVKDGDEKGHAEWLCKQIVTAKLFEGMSEANADKRWRSNVKQNGFEILLVSQ 94
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BLAST of mRNA_H-elongata_contig199409.5606.1 vs. uniprot
Match: A0A7S2W2N5_9STRA (D-aminoacyl-tRNA deacylase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W2N5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.260e-15
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:    1 MRVVIQRVKQASVTMVNEDASNTLVSEIGKGIVCLVGVHEGDERAHAEWMCKQIVGAKMFEGMSEENALKRWRSSVKQNGFEVLLVSQ 264
            MR+V+QRVK ASV +         +S +G GI+ LVG+HE D    AE+ CK+++GAK++   + +N   +WR  VKQ GFEVL VSQ
Sbjct:   28 MRIVVQRVKSASVRV-----DGQTISSVGPGIMALVGLHENDTEVDAEYCCKRLLGAKLW---ANDNG-GQWRHGVKQKGFEVLCVSQ 106
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BLAST of mRNA_H-elongata_contig199409.5606.1 vs. uniprot
Match: A0A7S2V4R2_9STRA (D-aminoacyl-tRNA deacylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4R2_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.440e-14
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 MRVVIQRVKQASVTMVNEDASNTLVSEIGKGIVCLVGVHEGDERAHAEWMCKQIVGAKMFEGMSEENALKRWRSSVKQNGFEVLLVSQ 264
            M+VVIQRVK ASV++     +++ +S IGKG +CLVG+HE D  A A+WM KQI+  K+F G  E+   K W+ ++ Q   E+L+VSQ
Sbjct:    1 MKVVIQRVKSASVSV-----NDSQISCIGKGFLCLVGIHETDGPADADWMIKQIISCKLFPG--EDG--KPWKRNISQIEGELLMVSQ 79
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BLAST of mRNA_H-elongata_contig199409.5606.1 vs. uniprot
Match: B7G7B9_PHATC (D-aminoacyl-tRNA deacylase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7B9_PHATC)

HSP 1 Score: 72.0 bits (175), Expect = 7.400e-14
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:    1 MRVVIQRVKQASVTMVNEDASNTLVSEIGKGIVCLVGVHEGDERAHAEWMCKQIVGAKMFEGMSEENALKRWRSSVKQNGFEVLLVSQ 264
            MR+V+QRVK ASVT+      + +VS IG GI+ LVG+HE D     E+ CK+++G K++   S       WR SVKQ  FE+L VSQ
Sbjct:    1 MRLVVQRVKSASVTV-----DDHVVSRIGPGILALVGLHEDDTEGDLEYCCKRLLGCKLWANGSGS----MWRHSVKQKDFELLCVSQ 79
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BLAST of mRNA_H-elongata_contig199409.5606.1 vs. uniprot
Match: A0A7S3EYB2_9EUKA (D-aminoacyl-tRNA deacylase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EYB2_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 1.460e-13
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:    1 MRVVIQRVKQASVTMVNEDASNTLVSEIGKGIVCLVGVHEGDERAHAEWMCKQIVGAKMFEGMSEENALKRWRSSVKQNGFEVLLVSQ 264
            MR+V+QRVK ASVT+       TLVS+I +G++ LVG+++ D  A  E+  K++  +K+++  ++    K WR SVKQ  +EVLLVSQ
Sbjct:   23 MRLVLQRVKSASVTV-----EGTLVSQISRGVLALVGIYKDDNAADLEYCAKKLCASKLWDNENQ----KSWRKSVKQMEYEVLLVSQ 101
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BLAST of mRNA_H-elongata_contig199409.5606.1 vs. uniprot
Match: UPI000901B143 (D-tyrosyl-tRNA(Tyr) deacylase-like isoform X2 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000901B143)

HSP 1 Score: 71.6 bits (174), Expect = 1.890e-13
Identity = 37/88 (42.05%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:    1 MRVVIQRVKQASVTMVNEDASNTLVSEIGKGIVCLVGVHEGDERAHAEWMCKQIVGAKMFEGMSEENALKRWRSSVKQNGFEVLLVSQ 264
            MR V+QRV  +SVT+        +VSEIG G++ L+G+HE D  + A+++C+++V  ++F   + E A K W  +V Q  +EVLLVSQ
Sbjct:   47 MRAVVQRVSSSSVTV-----DGRIVSEIGPGLLVLIGIHESDTDSDADYICRKVVNMRLF---TNETAGKGWDQNVMQRNYEVLLVSQ 126
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BLAST of mRNA_H-elongata_contig199409.5606.1 vs. uniprot
Match: A0A7J7MM04_9MAGN (D-aminoacyl-tRNA deacylase n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MM04_9MAGN)

HSP 1 Score: 71.2 bits (173), Expect = 1.940e-13
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:    1 MRVVIQRVKQASVTMVNEDASNTLVSEIGKGIVCLVGVHEGDERAHAEWMCKQIVGAKMFEGMSEENALKRWRSSVKQNGFEVLLVSQ 264
            MR V+QRV  ASV     +     VSEIG G+V LVGVHE D  A AE++C++++  ++F   + E   + W  +V Q  +EVLLVSQ
Sbjct:   30 MRAVVQRVASASV-----EVEERTVSEIGPGLVVLVGVHESDAEADAEYICRKVLNMRLF---NNETTGRAWDQNVMQRNYEVLLVSQ 109
[Close]
BLAST of mRNA_H-elongata_contig199409.5606.1 vs. uniprot
Match: A0A2N9G5W5_FAGSY (D-aminoacyl-tRNA deacylase n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G5W5_FAGSY)

HSP 1 Score: 69.7 bits (169), Expect = 2.480e-13
Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:    1 MRVVIQRVKQASVTMVNEDASNTLVSEIGKGIVCLVGVHEGDERAHAEWMCKQIVGAKMFEGMSEENALKRWRSSVKQNGFEVLLVSQ 264
            MR V+QRV  ASV     +    +VSEIG G++ LVG+HE D  + A+++C++++  ++F     EN  K W  +V Q  +EVLLVSQ
Sbjct:    1 MRAVVQRVASASV-----EVEGRIVSEIGPGLLVLVGLHESDSDSDADYICRKVLNMRLFPN---ENTGKGWDQNVMQRNYEVLLVSQ 80
[Close]
BLAST of mRNA_H-elongata_contig199409.5606.1 vs. uniprot
Match: A0A804K960_MUSAM (D-aminoacyl-tRNA deacylase n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804K960_MUSAM)

HSP 1 Score: 70.5 bits (171), Expect = 2.750e-13
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:    1 MRVVIQRVKQASVTMVNEDASNTLVSEIGKGIVCLVGVHEGDERAHAEWMCKQIVGAKMFEGMSEENALKRWRSSVKQNGFEVLLVSQ 264
            MR V+QRV  ASV     +    +VSEIG G++ LVGVHE D  A A+++C++++  ++F   S     K W  SVKQ+ F VLLVSQ
Sbjct:    1 MRAVVQRVLSASV-----EVEGRVVSEIGPGLLVLVGVHESDTDADADYICRKVLNMRLF---SNSKTGKAWDLSVKQSNFGVLLVSQ 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199409.5606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFD1_9PHAE2.520e-3871.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZS1_ECTSI2.700e-3669.15D-aminoacyl-tRNA deacylase n=1 Tax=Ectocarpus sili... [more]
A0A7S2W2N5_9STRA7.260e-1546.59D-aminoacyl-tRNA deacylase n=1 Tax=Eucampia antarc... [more]
A0A7S2V4R2_9STRA1.440e-1447.73D-aminoacyl-tRNA deacylase n=1 Tax=Fibrocapsa japo... [more]
B7G7B9_PHATC7.400e-1446.59D-aminoacyl-tRNA deacylase n=2 Tax=Phaeodactylum t... [more]
A0A7S3EYB2_9EUKA1.460e-1344.32D-aminoacyl-tRNA deacylase n=1 Tax=Haptolina erici... [more]
UPI000901B1431.890e-1342.05D-tyrosyl-tRNA(Tyr) deacylase-like isoform X2 n=1 ... [more]
A0A7J7MM04_9MAGN1.940e-1344.32D-aminoacyl-tRNA deacylase n=1 Tax=Kingdonia unifl... [more]
A0A2N9G5W5_FAGSY2.480e-1342.05D-aminoacyl-tRNA deacylase n=1 Tax=Fagus sylvatica... [more]
A0A804K960_MUSAM2.750e-1345.45D-aminoacyl-tRNA deacylase n=1 Tax=Musa acuminata ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199409contigH-elongata_contig199409:35..298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue4.8e-28
Seed eggNOG ortholog2880.D7FZS1
Preferred nameDTD1
KEGG koko:K07560,ko:K13117
KEGG ModuleM00355
GOsGO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006450,GO:0006520,GO:0006551,GO:0006552,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009081,GO:0009083,GO:0009987,GO:0016054,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0019478,GO:0019752,GO:0034641,GO:0034660,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0046416,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0097358,GO:0106026,GO:0106074,GO:0140098,GO:0140101,GO:1900828,GO:1900829,GO:1900831,GO:1900832,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
EggNOG free text desc.D-tyrosyl-tRNA(Tyr) deacylase activity
EggNOG OGsCOG1490@1,KOG3323@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01000,ko03016,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930124.9888058-CDS-H-elongata_contig199409:34..2981622930124.9888058-CDS-H-elongata_contig199409:34..298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199409 35..298 -
1691679290.5165818-CDS-H-elongata_contig199409:34..2981691679290.5165818-CDS-H-elongata_contig199409:34..298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199409 35..298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199409.5606.1prot_H-elongata_contig199409.5606.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199409 35..298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199409.5606.1

>prot_H-elongata_contig199409.5606.1 ID=prot_H-elongata_contig199409.5606.1|Name=mRNA_H-elongata_contig199409.5606.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MRVVIQRVKQASVTMVNEDASNTLVSEIGKGIVCLVGVHEGDERAHAEWM
CKQIVGAKMFEGMSEENALKRWRSSVKQNGFEVLLVSQ
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mRNA from alignment at H-elongata_contig199409:35..298-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199409.5606.1 ID=mRNA_H-elongata_contig199409.5606.1|Name=mRNA_H-elongata_contig199409.5606.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=264bp|location=Sequence derived from alignment at H-elongata_contig199409:35..298- (Himanthalia elongata Himel1 dioecious)
ATGAGGGTTGTGATTCAGAGAGTTAAGCAGGCGAGTGTCACCATGGTAAA
TGAAGACGCATCGAACACACTGGTGAGCGAAATCGGCAAGGGTATCGTAT
GCTTGGTGGGCGTGCACGAGGGAGATGAGCGGGCTCACGCGGAGTGGATG
TGCAAGCAGATTGTTGGCGCGAAGATGTTCGAGGGGATGTCCGAGGAAAA
CGCGCTGAAGCGCTGGCGATCCAGCGTGAAGCAGAACGGGTTTGAGGTTT
TGTTAGTTTCACAG
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Coding sequence (CDS) from alignment at H-elongata_contig199409:35..298-

>mRNA_H-elongata_contig199409.5606.1 ID=mRNA_H-elongata_contig199409.5606.1|Name=mRNA_H-elongata_contig199409.5606.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig199409:35..298- (Himanthalia elongata Himel1 dioecious)
ATGAGGGTTGTGATTCAGAGAGTTAAGCAGGCGAGTGTCACCATGGTAAA
TGAAGACGCATCGAACACACTGGTGAGCGAAATCGGCAAGGGTATCGTAT
GCTTGGTGGGCGTGCACGAGGGAGATGAGCGGGCTCACGCGGAGTGGATG
TGCAAGCAGATTGTTGGCGCGAAGATGTTCGAGGGGATGTCCGAGGAAAA
CGCGCTGAAGCGCTGGCGATCCAGCGTGAAGCAGAACGGGTTTGAGGTTT
TGTTAGTTTCACAGATGAGGGTTGTGATTCAGAGAGTTAAGCAGGCGAGT
GTCACCATGGTAAATGAAGACGCATCGAACACACTGGTGAGCGAAATCGG
CAAGGGTATCGTATGCTTGGTGGGCGTGCACGAGGGAGATGAGCGGGCTC
ACGCGGAGTGGATGTGCAAGCAGATTGTTGGCGCGAAGATGTTCGAGGGG
ATGTCCGAGGAAAACGCGCTGAAGCGCTGGCGATCCAGCGTGAAGCAGAA
CGGGTTTGAGGTTTTGTTAGTTTCACAG
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