mRNA_H-elongata_contig199374.5605.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199374.5605.1
Unique NamemRNA_H-elongata_contig199374.5605.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: D8LKV1_ECTSI (Coiled-coil domain-containing protein 94 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKV1_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.640e-35
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
            MSTLAAARADNMYYPPEWRPE GGISKFQGS GHNQYE YGKIRFELP HGWCLGCGRH+G+
Sbjct:    1 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPDHGWCLGCGRHIGR 62          
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: A0A482S855_9ARCH (DUF572 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S855_9ARCH)

HSP 1 Score: 115 bits (289), Expect = 3.000e-31
Identity = 50/62 (80.65%), Postives = 53/62 (85.48%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
            MS+LAA+RADN YYPPEWRPEMGGISKFQGSKG NQYE YG IRFELP   WCL C RH+GK
Sbjct:    1 MSSLAASRADNFYYPPEWRPEMGGISKFQGSKGKNQYEQYGIIRFELPFDAWCLKCKRHMGK 62          
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: A0A7S3H3M3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3M3_9STRA)

HSP 1 Score: 110 bits (275), Expect = 7.570e-29
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
            MS+LAAARADN Y+PPEW P+MGGISKFQGSKG NQYE  G IRFELP  GWCLGCG H+ K
Sbjct:    1 MSSLAAARADNFYFPPEWTPQMGGISKFQGSKGANQYEQKGIIRFELPFDGWCLGCGVHMTK 62          
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: A0A835Z9T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9T3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.400e-22
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
            MS+LAA +AD  YYPP W P+ G +SK  GSKG NQYE YG IRFELP + WC GCGR LGK
Sbjct:    1 MSSLAAVQADGFYYPPTWEPKHGSVSKAAGSKGSNQYEQYGVIRFELPYNAWCEGCGRPLGK 62          
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: A0A7S2WQQ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQQ1_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 9.000e-22
Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
            MS+LAAARAD  Y+PP+W P      KFQGS+G NQYE YG IRFELP  GWC GC RH GK
Sbjct:    1 MSSLAAARADGFYHPPDWDPNKTSRKKFQGSRGANQYEKYGVIRFELPYDGWCEGCERHYGK 62          
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: F0YIK6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIK6_AURAN)

HSP 1 Score: 91.7 bits (226), Expect = 3.910e-20
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEMGGISKFQG-SKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
            MSTL+AARADN YYPP W P    +S+  G ++G NQYE  G IRFELP  GWC GCGRH+GK
Sbjct:    1 MSTLSAARADNFYYPPNWDPSKESLSQHTGDTRGRNQYEQEGLIRFELPFDGWCEGCGRHVGK 63          
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: X6LQ05_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LQ05_RETFI)

HSP 1 Score: 85.9 bits (211), Expect = 3.240e-19
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
            MS+LAAARADN Y PP+W P      KFQGSKGHNQYE  G IRFE+P   +CL C +H+ K
Sbjct:    1 MSSLAAARADNFYNPPDWDPNQISRDKFQGSKGHNQYEQKGLIRFEMPFPIFCLKCDKHIDK 62          
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: A0A8J2SNI4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNI4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 8.170e-19
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEMGGISKFQG-SKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
            MSTL+AARADN YYPP W P    +++  G +KG NQYE  G IRFELP  GWC  CGRH+ K
Sbjct:    1 MSTLSAARADNFYYPPGWDPSKESLNQHTGHTKGRNQYEQKGLIRFELPFDGWCTKCGRHVAK 63          
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: X6PCF0_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6PCF0_RETFI)

HSP 1 Score: 85.9 bits (211), Expect = 3.310e-18
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
            MS+LAAARADN Y PP+W P      KFQGSKGHNQYE  G IRFE+P   +CL C +H+ K
Sbjct:    1 MSSLAAARADNFYNPPDWDPNQISRDKFQGSKGHNQYEQKGLIRFEMPFPIFCLKCDKHIDK 62          
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: A0A7S3PEB4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PEB4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.550e-17
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 MSTLAAARADNMYYPPEWRPEM-GGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
            MS+LAAA+AD  Y+PPE+ P   GG+SK+ GS G NQ+E  G +RFELP + WCLGC R +G+
Sbjct:    1 MSSLAAAQADGFYHPPEYDPRRHGGLSKYNGSTGSNQWEKRGIVRFELPYNAWCLGCKRAIGQ 63          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKV1_ECTSI1.640e-3590.32Coiled-coil domain-containing protein 94 n=2 Tax=E... [more]
A0A482S855_9ARCH3.000e-3180.65DUF572 domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S3H3M3_9STRA7.570e-2977.42Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835Z9T3_9STRA2.400e-2266.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WQQ1_9STRA9.000e-2266.13Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YIK6_AURAN3.910e-2063.49Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
X6LQ05_RETFI3.240e-1961.29Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
A0A8J2SNI4_9STRA8.170e-1960.32Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
X6PCF0_RETFI3.310e-1861.29Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
A0A7S3PEB4_9STRA1.550e-1757.14Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199374contigH-elongata_contig199374:916..1101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue6.8e-29
Seed eggNOG ortholog2880.D8LKV1
KEGG koko:K13115
EggNOG free text desc.response to virus
EggNOG OGsCOG5134@1,KOG2990@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930124.9473848-CDS-H-elongata_contig199374:915..11011622930124.9473848-CDS-H-elongata_contig199374:915..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199374 916..1101 +
1691679290.5014036-CDS-H-elongata_contig199374:915..11011691679290.5014036-CDS-H-elongata_contig199374:915..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199374 916..1101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199374.5605.1prot_H-elongata_contig199374.5605.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199374 916..1101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199374.5605.1

>prot_H-elongata_contig199374.5605.1 ID=prot_H-elongata_contig199374.5605.1|Name=mRNA_H-elongata_contig199374.5605.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVH
GWCLGCGRHLGK
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mRNA from alignment at H-elongata_contig199374:916..1101+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199374.5605.1 ID=mRNA_H-elongata_contig199374.5605.1|Name=mRNA_H-elongata_contig199374.5605.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig199374:916..1101+ (Himanthalia elongata Himel1 dioecious)
ATGTCAACTCTCGCCGCCGCGAGGGCGGACAACATGTACTATCCCCCGGA GTGGAGGCCGGAAATGGGAGGAATCTCCAAGTTCCAGGGCTCCAAGGGGC ATAACCAGTACGAACTGTACGGGAAGATTCGCTTCGAGCTGCCCGTGCAC GGATGGTGCCTCGGCTGTGGAAGGCACCTAGGGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig199374:916..1101+

>mRNA_H-elongata_contig199374.5605.1 ID=mRNA_H-elongata_contig199374.5605.1|Name=mRNA_H-elongata_contig199374.5605.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig199374:916..1101+ (Himanthalia elongata Himel1 dioecious)
ATGTCAACTCTCGCCGCCGCGAGGGCGGACAACATGTACTATCCCCCGGA
GTGGAGGCCGGAAATGGGAGGAATCTCCAAGTTCCAGGGCTCCAAGGGGC
ATAACCAGTACGAACTGTACGGGAAGATTCGCTTCGAGCTGCCCGTGCAC
GGATGGTGCCTCGGCTGTGGAAGGCACCTAGGGAAGATGTCAACTCTCGC
CGCCGCGAGGGCGGACAACATGTACTATCCCCCGGAGTGGAGGCCGGAAA
TGGGAGGAATCTCCAAGTTCCAGGGCTCCAAGGGGCATAACCAGTACGAA
CTGTACGGGAAGATTCGCTTCGAGCTGCCCGTGCACGGATGGTGCCTCGG
CTGTGGAAGGCACCTAGGGAAG
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