mRNA_H-elongata_contig199374.5605.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: D8LKV1_ECTSI (Coiled-coil domain-containing protein 94 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKV1_ECTSI) HSP 1 Score: 132 bits (333), Expect = 1.640e-35 Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 1
Query: 1 MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
MSTLAAARADNMYYPPEWRPE GGISKFQGS GHNQYE YGKIRFELP HGWCLGCGRH+G+
Sbjct: 1 MSTLAAARADNMYYPPEWRPEYGGISKFQGSNGHNQYEKYGKIRFELPDHGWCLGCGRHIGR 62
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: A0A482S855_9ARCH (DUF572 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S855_9ARCH) HSP 1 Score: 115 bits (289), Expect = 3.000e-31 Identity = 50/62 (80.65%), Postives = 53/62 (85.48%), Query Frame = 1
Query: 1 MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
MS+LAA+RADN YYPPEWRPEMGGISKFQGSKG NQYE YG IRFELP WCL C RH+GK
Sbjct: 1 MSSLAASRADNFYYPPEWRPEMGGISKFQGSKGKNQYEQYGIIRFELPFDAWCLKCKRHMGK 62
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: A0A7S3H3M3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3M3_9STRA) HSP 1 Score: 110 bits (275), Expect = 7.570e-29 Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 1
Query: 1 MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
MS+LAAARADN Y+PPEW P+MGGISKFQGSKG NQYE G IRFELP GWCLGCG H+ K
Sbjct: 1 MSSLAAARADNFYFPPEWTPQMGGISKFQGSKGANQYEQKGIIRFELPFDGWCLGCGVHMTK 62
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: A0A835Z9T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9T3_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 2.400e-22 Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 1
Query: 1 MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
MS+LAA +AD YYPP W P+ G +SK GSKG NQYE YG IRFELP + WC GCGR LGK
Sbjct: 1 MSSLAAVQADGFYYPPTWEPKHGSVSKAAGSKGSNQYEQYGVIRFELPYNAWCEGCGRPLGK 62
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: A0A7S2WQQ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQQ1_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 9.000e-22 Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 1 MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
MS+LAAARAD Y+PP+W P KFQGS+G NQYE YG IRFELP GWC GC RH GK
Sbjct: 1 MSSLAAARADGFYHPPDWDPNKTSRKKFQGSRGANQYEKYGVIRFELPYDGWCEGCERHYGK 62
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: F0YIK6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIK6_AURAN) HSP 1 Score: 91.7 bits (226), Expect = 3.910e-20 Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 1
Query: 1 MSTLAAARADNMYYPPEWRPEMGGISKFQG-SKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
MSTL+AARADN YYPP W P +S+ G ++G NQYE G IRFELP GWC GCGRH+GK
Sbjct: 1 MSTLSAARADNFYYPPNWDPSKESLSQHTGDTRGRNQYEQEGLIRFELPFDGWCEGCGRHVGK 63
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: X6LQ05_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LQ05_RETFI) HSP 1 Score: 85.9 bits (211), Expect = 3.240e-19 Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 1
Query: 1 MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
MS+LAAARADN Y PP+W P KFQGSKGHNQYE G IRFE+P +CL C +H+ K
Sbjct: 1 MSSLAAARADNFYNPPDWDPNQISRDKFQGSKGHNQYEQKGLIRFEMPFPIFCLKCDKHIDK 62
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: A0A8J2SNI4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNI4_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 8.170e-19 Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 1 MSTLAAARADNMYYPPEWRPEMGGISKFQG-SKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
MSTL+AARADN YYPP W P +++ G +KG NQYE G IRFELP GWC CGRH+ K
Sbjct: 1 MSTLSAARADNFYYPPGWDPSKESLNQHTGHTKGRNQYEQKGLIRFELPFDGWCTKCGRHVAK 63
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: X6PCF0_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6PCF0_RETFI) HSP 1 Score: 85.9 bits (211), Expect = 3.310e-18 Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 1
Query: 1 MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
MS+LAAARADN Y PP+W P KFQGSKGHNQYE G IRFE+P +CL C +H+ K
Sbjct: 1 MSSLAAARADNFYNPPDWDPNQISRDKFQGSKGHNQYEQKGLIRFEMPFPIFCLKCDKHIDK 62
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Match: A0A7S3PEB4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PEB4_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.550e-17 Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 1
Query: 1 MSTLAAARADNMYYPPEWRPEM-GGISKFQGSKGHNQYELYGKIRFELPVHGWCLGCGRHLGK 186
MS+LAAA+AD Y+PPE+ P GG+SK+ GS G NQ+E G +RFELP + WCLGC R +G+
Sbjct: 1 MSSLAAAQADGFYHPPEYDPRRHGGLSKYNGSTGSNQWEKRGIVRFELPYNAWCLGCKRAIGQ 63 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199374.5605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig199374.5605.1 >prot_H-elongata_contig199374.5605.1 ID=prot_H-elongata_contig199374.5605.1|Name=mRNA_H-elongata_contig199374.5605.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp MSTLAAARADNMYYPPEWRPEMGGISKFQGSKGHNQYELYGKIRFELPVHback to top mRNA from alignment at H-elongata_contig199374:916..1101+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig199374.5605.1 ID=mRNA_H-elongata_contig199374.5605.1|Name=mRNA_H-elongata_contig199374.5605.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig199374:916..1101+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig199374:916..1101+ >mRNA_H-elongata_contig199374.5605.1 ID=mRNA_H-elongata_contig199374.5605.1|Name=mRNA_H-elongata_contig199374.5605.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig199374:916..1101+ (Himanthalia elongata Himel1 dioecious)back to top |