mRNA_H-elongata_contig199326.5604.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199326.5604.1
Unique NamemRNA_H-elongata_contig199326.5604.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig199326.5604.1 vs. uniprot
Match: A0A6G0X7I6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7I6_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.660e-29
Identity = 62/143 (43.36%), Postives = 89/143 (62.24%), Query Frame = 1
Query:    1 TDAEVKEMRQIPYREIVGALMWLATMTR--LSFAAHQLSKFNDNLGPTHWREAQKALQYLWRIRDLEITYGGEPGGGK--LSAWIDADYGTCPDTRRSVSGGVVMMAGATISWFSRVQKVTAAESSESEYIALADMVNELRFL 417
            T  +V  M   PYR +VG+LM+LA  TR  L+F  HQLS+F DN GP HWR A++AL+YL   R   +  GG        LSA++D DY  CPDTRR VSG V++  G+ ISW ++ Q +    ++E+E++AL+  + E  ++
Sbjct: 1468 TPEDVSFMASKPYRSLVGSLMYLAMGTRPDLAFPLHQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDEDYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLSTTEAEFVALSLCIQECLYI 1610          
BLAST of mRNA_H-elongata_contig199326.5604.1 vs. uniprot
Match: UPI001EAF45B3 (secreted RxLR effector protein 161-like n=2 Tax=Osmia bicornis bicornis TaxID=1437191 RepID=UPI001EAF45B3)

HSP 1 Score: 112 bits (279), Expect = 2.860e-28
Identity = 58/137 (42.34%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    1 TDAEVKEMRQIPYREIVGALMWLATMTR--LSFAAHQLSKFNDNLGPTHWREAQKALQYLWRIRDLEITYGGEPGGGKLSAWIDADYGTCPDTRRSVSGGVVMMAGATISWFSRVQKVTAAESSESEYIALADMVNE 405
            T+ E   M Q+PYR ++G+LM+LAT TR  ++ A   LS+FNDN G  HW+ A++ L+Y+ R   +EI +       +L  + DAD+G   D RRS +G V  + G  ISW SR QK  A  S+E+EY+AL++   E
Sbjct:    5 TEEERDRMNQVPYRSLIGSLMYLATSTRPDIAHAVSALSQFNDNPGEEHWKAAKRVLRYIKRTEKMEIVFTKTEN--ELIGFSDADWGASIDDRRSYTGYVFRLFGGAISWSSRKQKTVAMSSAEAEYMALSEAAKE 139          
BLAST of mRNA_H-elongata_contig199326.5604.1 vs. uniprot
Match: A0A4S4KZ61_9AGAM (Uncharacterized protein (Fragment) n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4KZ61_9AGAM)

HSP 1 Score: 110 bits (275), Expect = 6.270e-28
Identity = 56/139 (40.29%), Postives = 87/139 (62.59%), Query Frame = 1
Query:   10 EVKEMRQIPYREIVGALMWLATMTR--LSFAAHQLSKFNDNLGPTHWREAQKALQYLWRIRDLEITYGGEPGGGKL-SAWIDADYGTCPDTRRSVSGGVVMMAGATISWFSRVQKVTAAESSESEYIALADMVNELRFL 417
            E+  M+ +PYR++VGALM+LA  TR  +S+A   L++F+ N GP HW+ A+   +YL   +D+++TY  +P   +L + + DAD+G   D RRS SG VV M    ISW SR+Q +    ++E+EYI+      E+ +L
Sbjct:   21 EIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSGMVVKMGTGAISWASRLQTIVTLSTTEAEYISAVQSGQEIIWL 159          
BLAST of mRNA_H-elongata_contig199326.5604.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.680e-28
Identity = 60/143 (41.96%), Postives = 88/143 (61.54%), Query Frame = 1
Query:    1 TDAEVKEMRQIPYREIVGALMWLATMTR--LSFAAHQLSKFNDNLGPTHWREAQKALQYLWRIRDLEITYGGEPGGGK--LSAWIDADYGTCPDTRRSVSGGVVMMAGATISWFSRVQKVTAAESSESEYIALADMVNELRFL 417
            T  ++  M   PYR +VG+ M+LA  TR  L+F   QLS+F DN GP HWR A++AL+YL   R   +  GG        LSA++DADY  CPDTRR VSG V++  G+ ISW ++ Q +    ++E+E++AL+  + E  ++
Sbjct:  619 TPEDISFMASKPYRSLVGSPMYLAMGTRPDLAFPLQQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLTKKQNIVTLSTTEAEFVALSLCIQECLYI 761          
BLAST of mRNA_H-elongata_contig199326.5604.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA)

HSP 1 Score: 117 bits (293), Expect = 8.130e-28
Identity = 60/143 (41.96%), Postives = 88/143 (61.54%), Query Frame = 1
Query:    1 TDAEVKEMRQIPYREIVGALMWLATMTR--LSFAAHQLSKFNDNLGPTHWREAQKALQYLWRIRDLEITYGGEPGGGK--LSAWIDADYGTCPDTRRSVSGGVVMMAGATISWFSRVQKVTAAESSESEYIALADMVNELRFL 417
            T  ++  M   PYR +VG+LM+LA  TR  L+F   QLS+F DN  P HWR A++AL+YL   R   +  GG        LSA++DADY  CPDTRR VSG V++  G+ ISW ++ Q +    ++E+E++AL+  + E  ++
Sbjct: 1763 TPEDISFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLDNPDPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLSTTEAEFVALSLCIQECLYI 1905          
BLAST of mRNA_H-elongata_contig199326.5604.1 vs. uniprot
Match: UPI001E1BB9B0 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BB9B0)

HSP 1 Score: 110 bits (274), Expect = 1.150e-27
Identity = 56/143 (39.16%), Postives = 88/143 (61.54%), Query Frame = 1
Query:    1 TDAEVKEMRQIPYREIVGALMWLATMTR--LSFAAHQLSKFNDNLGPTHWREAQKALQYLWRIRDLEITYGGEPGGGK--LSAWIDADYGTCPDTRRSVSGGVVMMAGATISWFSRVQKVTAAESSESEYIALADMVNELRFL 417
            TD EV+EM+QIPY+E VGAL++L+T TR  +S+A  Q++KFN N G  HW+  ++  +YL   R+  I +   P G +  +  + DAD+   PD + S SG V +  G + SWFSR Q  T+  ++E+E++A  +   E  ++
Sbjct:    5 TDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGIFFSPNPSGKEEEIVGFTDADHAGDPDDQTSTSGCVFICHGGSFSWFSRKQGCTSLSTTEAEFVAGGEAAKEATWI 147          
BLAST of mRNA_H-elongata_contig199326.5604.1 vs. uniprot
Match: A0A8J6HCF2_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HCF2_TENMO)

HSP 1 Score: 108 bits (271), Expect = 1.420e-27
Identity = 55/139 (39.57%), Postives = 88/139 (63.31%), Query Frame = 1
Query:   13 VKEMRQ------IPYREIVGALMWLATMTR--LSFAAHQLSKFNDNLGPTHWREAQKALQYLWRIRDLEITYGGEPGGGKLSAWIDADYGTCPDTRRSVSGGVVMMAGATISWFSRVQKVTAAESSESEYIALADMVNE 405
            +K+ RQ      +PYRE++G+L +L+T TR  +SFA   L +FN+  G  HW  A++ L+YL    DL + Y  EP    L+ ++DAD+G+C + RRS +G + ++ G  +SW SR Q+  A  ++E+EY+AL++ V E
Sbjct:   18 IKKQRQSNEELRLPYRELLGSLTYLSTTTRPDISFAVSHLGQFNNCYGEDHWTAAKRVLRYLKGTVDLGLVY--EPDSDPLTGFVDADWGSCTEDRRSFTGYIFLLNGGPVSWDSRKQRTVALSTTEAEYMALSEGVKE 154          
BLAST of mRNA_H-elongata_contig199326.5604.1 vs. uniprot
Match: A0A4S4KXB7_9AGAM (Uncharacterized protein n=3 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4KXB7_9AGAM)

HSP 1 Score: 110 bits (275), Expect = 2.720e-27
Identity = 56/139 (40.29%), Postives = 87/139 (62.59%), Query Frame = 1
Query:   10 EVKEMRQIPYREIVGALMWLATMTR--LSFAAHQLSKFNDNLGPTHWREAQKALQYLWRIRDLEITYGGEPGGGKL-SAWIDADYGTCPDTRRSVSGGVVMMAGATISWFSRVQKVTAAESSESEYIALADMVNELRFL 417
            E+  M+ +PYR++VGALM+LA  TR  +S+A   L++F+ N GP HW+ A+   +YL   +D+++TY  +P   +L + + DAD+G   D RRS SG VV M    ISW SR+Q +    ++E+EYI+      E+ +L
Sbjct:    8 EIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSGMVVKMGTGAISWASRLQTIVTLSTTEAEYISAVQSGQEIIWL 146          
BLAST of mRNA_H-elongata_contig199326.5604.1 vs. uniprot
Match: A0A0A9Z317_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z317_LYGHE)

HSP 1 Score: 110 bits (276), Expect = 7.390e-27
Identity = 57/140 (40.71%), Postives = 87/140 (62.14%), Query Frame = 1
Query:    1 TDAEVKEMRQIPYREIVGALMWLATMTR--LSFAAHQLSKFNDNLGPTHWREAQKALQYLWRIRDLEITYGGEPGGGKLSAWIDADYGTCPDTRRSVSGGVVMMAGATISWFSRVQKVTAAESSESEYIALADMVNELRF 414
            T  EV+EM +IPY+ +VG+LM+LAT TR  +S +   LS+FN   G  HW  A++ L+YL + RD  +T+  +  G ++  ++DAD+G   D R+S +G     AG+ ISW SR Q+  A  S+E+EY+AL +   E  +
Sbjct:  121 TPEEVEEMSKIPYQNLVGSLMYLATATRPDISHSVSVLSQFNSCYGSEHWVAAKRVLRYLKKTRDYGLTF--KKTGNRIVGYVDADWGASLDDRKSYTGYAFKFAGSCISWESRKQRTVALSSTEAEYMALTEATKEASY 258          
BLAST of mRNA_H-elongata_contig199326.5604.1 vs. uniprot
Match: A0A4V3X9U7_9AGAM (Uncharacterized protein n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4V3X9U7_9AGAM)

HSP 1 Score: 110 bits (275), Expect = 7.770e-27
Identity = 56/139 (40.29%), Postives = 87/139 (62.59%), Query Frame = 1
Query:   10 EVKEMRQIPYREIVGALMWLATMTR--LSFAAHQLSKFNDNLGPTHWREAQKALQYLWRIRDLEITYGGEPGGGKL-SAWIDADYGTCPDTRRSVSGGVVMMAGATISWFSRVQKVTAAESSESEYIALADMVNELRFL 417
            E+  M+ +PYR++VGALM+LA  TR  +S+A   L++F+ N GP HW+ A+   +YL   +D+++TY  +P   +L + + DAD+G   D RRS SG VV M    ISW SR+Q +    ++E+EYI+      E+ +L
Sbjct:   57 EIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSGMVVKMGTGAISWASRLQTIVTLSTTEAEYISAVQSGQEIIWL 195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199326.5604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0X7I6_9STRA2.660e-2943.36Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI001EAF45B32.860e-2842.34secreted RxLR effector protein 161-like n=2 Tax=Os... [more]
A0A4S4KZ61_9AGAM6.270e-2840.29Uncharacterized protein (Fragment) n=2 Tax=Phellin... [more]
A0A6G0W6P6_9STRA7.680e-2841.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0W780_9STRA8.130e-2841.96Integrase catalytic domain-containing protein n=3 ... [more]
UPI001E1BB9B01.150e-2739.16secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A8J6HCF2_TENMO1.420e-2739.57Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A4S4KXB7_9AGAM2.720e-2740.29Uncharacterized protein n=3 Tax=Phellinidium pouza... [more]
A0A0A9Z317_LYGHE7.390e-2740.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A4V3X9U7_9AGAM7.770e-2740.29Uncharacterized protein n=2 Tax=Phellinidium pouza... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199326contigH-elongata_contig199326:293..712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue2.5e-20
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size420
Cds size399
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930124.884467-CDS-H-elongata_contig199326:292..6911622930124.884467-CDS-H-elongata_contig199326:292..691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199326 293..691 -
1691679290.4762137-CDS-H-elongata_contig199326:292..6911691679290.4762137-CDS-H-elongata_contig199326:292..691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199326 293..691 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930124.8996556-UTR-H-elongata_contig199326:691..7121622930124.8996556-UTR-H-elongata_contig199326:691..712Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig199326 692..712 -
1691679290.4875958-UTR-H-elongata_contig199326:691..7121691679290.4875958-UTR-H-elongata_contig199326:691..712Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig199326 692..712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199326.5604.1prot_H-elongata_contig199326.5604.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199326 293..691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199326.5604.1

>prot_H-elongata_contig199326.5604.1 ID=prot_H-elongata_contig199326.5604.1|Name=mRNA_H-elongata_contig199326.5604.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MRQIPYREIVGALMWLATMTRLSFAAHQLSKFNDNLGPTHWREAQKALQY
LWRIRDLEITYGGEPGGGKLSAWIDADYGTCPDTRRSVSGGVVMMAGATI
SWFSRVQKVTAAESSESEYIALADMVNELRFL*
back to top

mRNA from alignment at H-elongata_contig199326:293..712-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199326.5604.1 ID=mRNA_H-elongata_contig199326.5604.1|Name=mRNA_H-elongata_contig199326.5604.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig199326:293..712- (Himanthalia elongata Himel1 dioecious)
ACGGACGCAGAGGTTAAAGAAATGCGCCAGATTCCCTACCGAGAAATCGT TGGGGCTCTAATGTGGTTAGCGACGATGACCAGGCTTTCATTCGCTGCGC ACCAACTGTCGAAATTCAACGACAACCTGGGACCGACACACTGGAGGGAA GCCCAGAAAGCGCTGCAATATTTATGGCGCATTCGGGACCTCGAGATCAC CTACGGAGGGGAACCGGGGGGGGGCAAGTTATCAGCATGGATAGATGCAG ACTATGGCACCTGCCCGGACACGCGTCGCTCAGTGTCGGGAGGGGTGGTA ATGATGGCTGGCGCGACCATCAGTTGGTTCTCACGAGTGCAAAAGGTAAC GGCGGCGGAGTCGTCCGAATCGGAATACATCGCGCTAGCTGACATGGTAA ACGAGTTGCGTTTCCTATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig199326:293..712-

>mRNA_H-elongata_contig199326.5604.1 ID=mRNA_H-elongata_contig199326.5604.1|Name=mRNA_H-elongata_contig199326.5604.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig199326:293..712- (Himanthalia elongata Himel1 dioecious)
ATGCGCCAGATTCCCTACCGAGAAATCGTTGGGGCTCTAATGTGGTTAGC
GACGATGACCAGGCTTTCATTCGCTGCGCACCAACTGTCGAAATTCAACG
ACAACCTGGGACCGACACACTGGAGGGAAGCCCAGAAAGCGCTGCAATAT
TTATGGCGCATTCGGGACCTCGAGATCACCTACGGAGGGGAACCGGGGGG
GGGCAAGTTATCAGCATGGATAGATGCAGACTATGGCACCTGCCCGGACA
CGCGTCGCTCAGTGTCGGGAGGGGTGGTAATGATGGCTGGCGCGACCATC
AGTTGGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGAGTCGTCCGAATC
GGAATACATCGCGCTAGCTGACATGGTAAACGAGTTGCGTTTCCTATGAA
TGCGCCAGATTCCCTACCGAGAAATCGTTGGGGCTCTAATGTGGTTAGCG
ACGATGACCAGGCTTTCATTCGCTGCGCACCAACTGTCGAAATTCAACGA
CAACCTGGGACCGACACACTGGAGGGAAGCCCAGAAAGCGCTGCAATATT
TATGGCGCATTCGGGACCTCGAGATCACCTACGGAGGGGAACCGGGGGGG
GGCAAGTTATCAGCATGGATAGATGCAGACTATGGCACCTGCCCGGACAC
GCGTCGCTCAGTGTCGGGAGGGGTGGTAATGATGGCTGGCGCGACCATCA
GTTGGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGAGTCGTCCGAATCG
GAATACATCGCGCTAGCTGACATGGTAAACGAGTTGCGTTTCCTATGA
back to top