mRNA_H-elongata_contig199287.5603.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199287.5603.1
Unique NamemRNA_H-elongata_contig199287.5603.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig199287.5603.1 vs. uniprot
Match: A0A6H5KRR0_9PHAE (PlsC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRR0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 6.150e-15
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:   22 IGYTGYSGEIPTWEMGFTRKKDVDLPNLMALLRGRAPGPVRI 147
            +GYTGYSGEIP+WEMG+TR +DVD+PNL ALL+GRAPGPV +
Sbjct:  286 MGYTGYSGEIPSWEMGYTRDRDVDVPNLGALLKGRAPGPVHL 327
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BLAST of mRNA_H-elongata_contig199287.5603.1 vs. uniprot
Match: A0A1Q2U6T9_9STRA (Lysophosphatidate acyltransferase 4 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1Q2U6T9_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 9.100e-7
Identity = 20/42 (47.62%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   22 IGYTGYSGEIPTWEMGFTRKKDVDLPNLMALLRGRAPGPVRI 147
            + Y GYSGE+PT+EMG+ R++D+D+PN+  +++GRA   V +
Sbjct:  325 VAYHGYSGEVPTYEMGYDREQDMDVPNVFKMIQGRACPKVHV 366
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BLAST of mRNA_H-elongata_contig199287.5603.1 vs. uniprot
Match: A0A835ZF56_9STRA (Acyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF56_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.270e-6
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    4 GTVGD-QIGYTGYSGEIPTWEMGFTRKKDVDLPNLMALLRGRAPGPVRI 147
            GTV D  I Y GYSGE+PTWEMG+ R +DV LP++  L+  +  G   I
Sbjct:  189 GTVYDLTIAYEGYSGEVPTWEMGYERARDVTLPSMAKLMAAQRCGRAHI 237
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BLAST of mRNA_H-elongata_contig199287.5603.1 vs. uniprot
Match: A0A3R7X9A4_9STRA (PlsC domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7X9A4_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.030e-6
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:   22 IGYTGYSGEIPTWEMGFTRKKDVDLPNLMALLRGRAPGPVRIKHC 156
            + +  YSGE+PT+EMG+ R  DVDLP++  LL G  P  V   HC
Sbjct:  136 MAFPSYSGEVPTYEMGYDRHVDVDLPSMKKLLMGHGPSKVHF-HC 179
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BLAST of mRNA_H-elongata_contig199287.5603.1 vs. uniprot
Match: W4GZW6_9STRA (PlsC domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GZW6_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.080e-6
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:   22 IGYTGYSGEIPTWEMGFTRKKDVDLPNLMALLRGRAPGPVRIKHC 156
            + +  YSGE+PT+EMG+ R  DVDLP++  LL G  P  V   HC
Sbjct:  222 MAFPSYSGEVPTYEMGYDRHVDVDLPSMKKLLMGHGPSKVHF-HC 265
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BLAST of mRNA_H-elongata_contig199287.5603.1 vs. uniprot
Match: A0A6A5A663_9STRA (PlsC domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A663_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.200e-6
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:   22 IGYTGYSGEIPTWEMGFTRKKDVDLPNLMALLRGRAPGPVRIKHC 156
            + +  YSGE+PT+EMG+ R  DVDLP++  LL G  P  V   HC
Sbjct:  111 MAFPSYSGEVPTYEMGYDRHVDVDLPSMKKLLMGHGPSKVHF-HC 154
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BLAST of mRNA_H-elongata_contig199287.5603.1 vs. uniprot
Match: A0A2D4BDX1_PYTIN (1-acyl-sn-glycerol-3-phosphate acyltransferase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDX1_PYTIN)

HSP 1 Score: 50.1 bits (118), Expect = 1.110e-5
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   22 IGYTGYSGEIPTWEMGFTRKKDVDLPNLMALLRGRAPGPVRI 147
            I +  YSGEIPT++MG+ RK D  +P++ +LL G+ PG V I
Sbjct:  218 IAFPSYSGEIPTFDMGYDRKIDTQIPSMKSLLAGKKPGTVAI 259
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BLAST of mRNA_H-elongata_contig199287.5603.1 vs. uniprot
Match: A0A8K1CJG2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJG2_PYTOL)

HSP 1 Score: 50.1 bits (118), Expect = 1.110e-5
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   22 IGYTGYSGEIPTWEMGFTRKKDVDLPNLMALLRGRAPGPV 141
            I +  YSGE+PT++MG+ RK D D+P++ +LL G+ PG V
Sbjct:  218 IAFPSYSGEVPTFDMGYDRKIDTDVPSMKSLLAGKKPGRV 257
[Close]
BLAST of mRNA_H-elongata_contig199287.5603.1 vs. uniprot
Match: A0A1V9YEY7_9STRA (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEY7_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.540e-5
Identity = 20/42 (47.62%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   22 IGYTGYSGEIPTWEMGFTRKKDVDLPNLMALLRGRAPGPVRI 147
            IGY GY+GE+PT+ MG++R+ DV +P++  LL G  P  V +
Sbjct:  742 IGYPGYTGEVPTYSMGYSRRVDVAVPSMRQLLAGGGPSHVHL 783
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BLAST of mRNA_H-elongata_contig199287.5603.1 vs. uniprot
Match: A0A7S3Y9A3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9A3_HETAK)

HSP 1 Score: 49.3 bits (116), Expect = 2.050e-5
Identity = 18/32 (56.25%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   22 IGYTGYSGEIPTWEMGFTRKKDVDLPNLMALL 117
            I Y+ YSGE+PTW MG+TRK D+D+P++  L+
Sbjct:  227 IAYSSYSGEVPTWSMGYTRKHDLDIPSVARLM 258
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199287.5603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KRR0_9PHAE6.150e-1576.19PlsC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A1Q2U6T9_9STRA9.100e-747.62Lysophosphatidate acyltransferase 4 n=1 Tax=Nannoc... [more]
A0A835ZF56_9STRA2.270e-651.02Acyltransferase-domain-containing protein n=1 Tax=... [more]
A0A3R7X9A4_9STRA8.030e-648.89PlsC domain-containing protein n=1 Tax=Aphanomyces... [more]
W4GZW6_9STRA8.080e-648.89PlsC domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6A5A663_9STRA8.200e-648.89PlsC domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A2D4BDX1_PYTIN1.110e-550.001-acyl-sn-glycerol-3-phosphate acyltransferase, pu... [more]
A0A8K1CJG2_PYTOL1.110e-550.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YEY7_9STRA1.540e-547.621-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A7S3Y9A3_HETAK2.050e-556.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199287contigH-elongata_contig199287:708..863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue5.7e-13
Seed eggNOG ortholog2880.D7G4B3
Preferred nameLPGAT1
KEGG rclassRC00004,RC00037
KEGG koko:K13514,ko:K15176
KEGG ReactionR09036
KEGG Pathwayko00564,map00564
GOsGO:0003674,GO:0003824,GO:0003841,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010565,GO:0012505,GO:0016020,GO:0016021,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0019216,GO:0019217,GO:0019222,GO:0019637,GO:0031224,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031984,GO:0036148,GO:0036149,GO:0042171,GO:0042175,GO:0042304,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045723,GO:0045834,GO:0045923,GO:0046471,GO:0046486,GO:0046488,GO:0046889,GO:0046890,GO:0047144,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0062012,GO:0062013,GO:0065007,GO:0071617,GO:0071704,GO:0080090,GO:0090407,GO:0098827,GO:1901576
EggNOG free text desc.1-acylglycerol-3-phosphate O-acyltransferase activity
EggNOG OGsCOG0204@1,KOG1505@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko03021
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930124.8446288-CDS-H-elongata_contig199287:707..8631622930124.8446288-CDS-H-elongata_contig199287:707..863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199287 708..863 +
1691679290.4623117-CDS-H-elongata_contig199287:707..8631691679290.4623117-CDS-H-elongata_contig199287:707..863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199287 708..863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199287.5603.1prot_H-elongata_contig199287.5603.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199287 708..863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199287.5603.1

>prot_H-elongata_contig199287.5603.1 ID=prot_H-elongata_contig199287.5603.1|Name=mRNA_H-elongata_contig199287.5603.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MGTVGDQIGYTGYSGEIPTWEMGFTRKKDVDLPNLMALLRGRAPGPVRIK
HC
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mRNA from alignment at H-elongata_contig199287:708..863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199287.5603.1 ID=mRNA_H-elongata_contig199287.5603.1|Name=mRNA_H-elongata_contig199287.5603.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig199287:708..863+ (Himanthalia elongata Himel1 dioecious)
ATGGGTACGGTTGGCGACCAGATCGGGTACACGGGGTACAGTGGCGAGAT
TCCAACGTGGGAGATGGGATTCACCCGGAAGAAGGATGTGGACCTCCCTA
ACTTGATGGCACTGTTGAGAGGGCGCGCACCGGGACCGGTAAGAATAAAA
CATTGC
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Coding sequence (CDS) from alignment at H-elongata_contig199287:708..863+

>mRNA_H-elongata_contig199287.5603.1 ID=mRNA_H-elongata_contig199287.5603.1|Name=mRNA_H-elongata_contig199287.5603.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig199287:708..863+ (Himanthalia elongata Himel1 dioecious)
ATGGGTACGGTTGGCGACCAGATCGGGTACACGGGGTACAGTGGCGAGAT
TCCAACGTGGGAGATGGGATTCACCCGGAAGAAGGATGTGGACCTCCCTA
ACTTGATGGCACTGTTGAGAGGGCGCGCACCGGGACCGGTAAGAATAAAA
CATTGCATGGGTACGGTTGGCGACCAGATCGGGTACACGGGGTACAGTGG
CGAGATTCCAACGTGGGAGATGGGATTCACCCGGAAGAAGGATGTGGACC
TCCCTAACTTGATGGCACTGTTGAGAGGGCGCGCACCGGGACCGGTAAGA
ATAAAACATTGC
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