mRNA_H-elongata_contig199285.5602.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: D7FNT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNT4_ECTSI) HSP 1 Score: 102 bits (255), Expect = 4.140e-25 Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 1
Query: 1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSLYEVEFA 189
PGK+EFDYLPENCQAVLMLPV++ V+VVGTNRARAFTP+DIVWMKGL +AALSL E A
Sbjct: 230 PGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLREAVVA 292
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: A0A835YLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX2_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 2.730e-13 Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1
Query: 1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSL 171
PGKIEF YLP NCQ V++ V+ R +VVG ++ARA+TPRDI WMK E+A L
Sbjct: 246 PGKIEFTYLPANCQGVVIQGVLGGRGAVVVGASQARAYTPRDIAWMKAASERATALL 302
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: K9PDZ5_9CYAN (Uncharacterized protein n=1 Tax=Calothrix sp. PCC 7507 TaxID=99598 RepID=K9PDZ5_9CYAN) HSP 1 Score: 65.5 bits (158), Expect = 2.240e-11 Identity = 28/62 (45.16%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSLYEVEF 186
PGKIEFDYLP+N Q V+ P+ + V+++G N R++T +D +W+ G+ +K A+SL ++EF
Sbjct: 155 PGKIEFDYLPDNTQGVICQPIGD-KGVLILGANAPRSYTKQDEIWIAGIADKLAVSLQKLEF 215
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: A0A8J7KYG4_9NOST (Cofactor assembly of complex C subunit B n=1 Tax=Atlanticothrix silvestris CENA357 TaxID=1725252 RepID=A0A8J7KYG4_9NOST) HSP 1 Score: 62.4 bits (150), Expect = 3.280e-10 Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSLYEVE 183
PGKIEFDYLPEN Q V+ P+ V+I +G N R++T +D W+ G+ +K A++L E+E
Sbjct: 155 PGKIEFDYLPENTQGVICQPIGNQGVLI-LGANAPRSYTKQDENWIAGIADKLAVTLQELE 214
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: K9ZGD1_ANACC (Uncharacterized protein n=2 Tax=Nostocaceae TaxID=1162 RepID=K9ZGD1_ANACC) HSP 1 Score: 61.6 bits (148), Expect = 6.090e-10 Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSL 171
PGKIEFDYLPEN Q V+ P+ K V+I +G N R++T +D W++G+ +K A+++
Sbjct: 155 PGKIEFDYLPENTQGVICQPIGKEGVLI-LGANAPRSYTKQDETWIEGIADKLAVTM 210
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: A0A563VQL8_9CYAN (Uncharacterized protein n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563VQL8_9CYAN) HSP 1 Score: 61.6 bits (148), Expect = 6.170e-10 Identity = 26/57 (45.61%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSL 171
PGKIEFDYLPEN Q V+ P+ + R V+++G + +R++T +D W++G+ +K A++L
Sbjct: 155 PGKIEFDYLPENTQGVICQPIGE-RGVLILGADTSRSYTKQDETWIEGIADKLAITL 210
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: A0A1Z4RSL5_9CHRO (Uncharacterized protein n=1 Tax=Chondrocystis sp. NIES-4102 TaxID=2005460 RepID=A0A1Z4RSL5_9CHRO) HSP 1 Score: 61.6 bits (148), Expect = 6.400e-10 Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSL 171
PGK+EFDYLPEN Q V+ P+ V+I +G N R++T +D VW++G+ +K A++L
Sbjct: 155 PGKVEFDYLPENTQGVICQPIGSLGVLI-LGANAPRSYTKQDEVWIEGIADKLAVTL 210
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: A0A0M5MH14_9NOSO (Uncharacterized protein n=7 Tax=Nostocales TaxID=1161 RepID=A0A0M5MH14_9NOSO) HSP 1 Score: 61.6 bits (148), Expect = 6.550e-10 Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSLYEVEF 186
PG+IEFDYLPEN Q V+ P+ V+I +G N R++T +D W+ G+ +K A++L ++ F
Sbjct: 156 PGRIEFDYLPENTQGVICQPIADQGVMI-LGANAPRSYTKQDENWIAGIADKLAVTLQQISF 216
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: UPI000B59D58C (cofactor assembly of complex C subunit B n=1 Tax=Leptolyngbya ohadii TaxID=1962290 RepID=UPI000B59D58C) HSP 1 Score: 61.6 bits (148), Expect = 6.630e-10 Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSLYEV 180
PG+IEFDYLPEN Q V+ P+ K+ V+I +G N R++T +D W+ G+ +K A SL V
Sbjct: 153 PGRIEFDYLPENTQGVICQPIGKSGVMI-LGANAPRSYTKQDETWIAGIADKLANSLESV 211
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: UPI0019E2E38C (Cofactor assembly of complex C subunit B n=1 Tax=Pleurocapsales cyanobacterium LEGE 06147 TaxID=1828827 RepID=UPI0019E2E38C) HSP 1 Score: 61.2 bits (147), Expect = 8.730e-10 Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSLYEVEF 186
PGKIEFDYLPEN Q V+ P+ R V+++G N R++T +D W++G+ +K A +L V F
Sbjct: 155 PGKIEFDYLPENTQGVICQPIGD-RGVLILGANAPRSYTKQDEKWIEGIADKLAETLKIVNF 215 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig199285.5602.1 >prot_H-elongata_contig199285.5602.1 ID=prot_H-elongata_contig199285.5602.1|Name=mRNA_H-elongata_contig199285.5602.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGback to top mRNA from alignment at H-elongata_contig199285:141..332+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig199285.5602.1 ID=mRNA_H-elongata_contig199285.5602.1|Name=mRNA_H-elongata_contig199285.5602.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig199285:141..332+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig199285:141..332+ >mRNA_H-elongata_contig199285.5602.1 ID=mRNA_H-elongata_contig199285.5602.1|Name=mRNA_H-elongata_contig199285.5602.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig199285:141..332+ (Himanthalia elongata Himel1 dioecious)back to top |