mRNA_H-elongata_contig199285.5602.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199285.5602.1
Unique NamemRNA_H-elongata_contig199285.5602.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: D7FNT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNT4_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 4.140e-25
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 1
Query:    1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSLYEVEFA 189
            PGK+EFDYLPENCQAVLMLPV++   V+VVGTNRARAFTP+DIVWMKGL  +AALSL E   A
Sbjct:  230 PGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLREAVVA 292          
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: A0A835YLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX2_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.730e-13
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSL 171
            PGKIEF YLP NCQ V++  V+  R  +VVG ++ARA+TPRDI WMK   E+A   L
Sbjct:  246 PGKIEFTYLPANCQGVVIQGVLGGRGAVVVGASQARAYTPRDIAWMKAASERATALL 302          
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: K9PDZ5_9CYAN (Uncharacterized protein n=1 Tax=Calothrix sp. PCC 7507 TaxID=99598 RepID=K9PDZ5_9CYAN)

HSP 1 Score: 65.5 bits (158), Expect = 2.240e-11
Identity = 28/62 (45.16%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSLYEVEF 186
            PGKIEFDYLP+N Q V+  P+   + V+++G N  R++T +D +W+ G+ +K A+SL ++EF
Sbjct:  155 PGKIEFDYLPDNTQGVICQPIGD-KGVLILGANAPRSYTKQDEIWIAGIADKLAVSLQKLEF 215          
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: A0A8J7KYG4_9NOST (Cofactor assembly of complex C subunit B n=1 Tax=Atlanticothrix silvestris CENA357 TaxID=1725252 RepID=A0A8J7KYG4_9NOST)

HSP 1 Score: 62.4 bits (150), Expect = 3.280e-10
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSLYEVE 183
            PGKIEFDYLPEN Q V+  P+    V+I +G N  R++T +D  W+ G+ +K A++L E+E
Sbjct:  155 PGKIEFDYLPENTQGVICQPIGNQGVLI-LGANAPRSYTKQDENWIAGIADKLAVTLQELE 214          
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: K9ZGD1_ANACC (Uncharacterized protein n=2 Tax=Nostocaceae TaxID=1162 RepID=K9ZGD1_ANACC)

HSP 1 Score: 61.6 bits (148), Expect = 6.090e-10
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSL 171
            PGKIEFDYLPEN Q V+  P+ K  V+I +G N  R++T +D  W++G+ +K A+++
Sbjct:  155 PGKIEFDYLPENTQGVICQPIGKEGVLI-LGANAPRSYTKQDETWIEGIADKLAVTM 210          
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: A0A563VQL8_9CYAN (Uncharacterized protein n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563VQL8_9CYAN)

HSP 1 Score: 61.6 bits (148), Expect = 6.170e-10
Identity = 26/57 (45.61%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSL 171
            PGKIEFDYLPEN Q V+  P+ + R V+++G + +R++T +D  W++G+ +K A++L
Sbjct:  155 PGKIEFDYLPENTQGVICQPIGE-RGVLILGADTSRSYTKQDETWIEGIADKLAITL 210          
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: A0A1Z4RSL5_9CHRO (Uncharacterized protein n=1 Tax=Chondrocystis sp. NIES-4102 TaxID=2005460 RepID=A0A1Z4RSL5_9CHRO)

HSP 1 Score: 61.6 bits (148), Expect = 6.400e-10
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSL 171
            PGK+EFDYLPEN Q V+  P+    V+I +G N  R++T +D VW++G+ +K A++L
Sbjct:  155 PGKVEFDYLPENTQGVICQPIGSLGVLI-LGANAPRSYTKQDEVWIEGIADKLAVTL 210          
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: A0A0M5MH14_9NOSO (Uncharacterized protein n=7 Tax=Nostocales TaxID=1161 RepID=A0A0M5MH14_9NOSO)

HSP 1 Score: 61.6 bits (148), Expect = 6.550e-10
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSLYEVEF 186
            PG+IEFDYLPEN Q V+  P+    V+I +G N  R++T +D  W+ G+ +K A++L ++ F
Sbjct:  156 PGRIEFDYLPENTQGVICQPIADQGVMI-LGANAPRSYTKQDENWIAGIADKLAVTLQQISF 216          
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: UPI000B59D58C (cofactor assembly of complex C subunit B n=1 Tax=Leptolyngbya ohadii TaxID=1962290 RepID=UPI000B59D58C)

HSP 1 Score: 61.6 bits (148), Expect = 6.630e-10
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSLYEV 180
            PG+IEFDYLPEN Q V+  P+ K+ V+I +G N  R++T +D  W+ G+ +K A SL  V
Sbjct:  153 PGRIEFDYLPENTQGVICQPIGKSGVMI-LGANAPRSYTKQDETWIAGIADKLANSLESV 211          
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Match: UPI0019E2E38C (Cofactor assembly of complex C subunit B n=1 Tax=Pleurocapsales cyanobacterium LEGE 06147 TaxID=1828827 RepID=UPI0019E2E38C)

HSP 1 Score: 61.2 bits (147), Expect = 8.730e-10
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLGEKAALSLYEVEF 186
            PGKIEFDYLPEN Q V+  P+   R V+++G N  R++T +D  W++G+ +K A +L  V F
Sbjct:  155 PGKIEFDYLPENTQGVICQPIGD-RGVLILGANAPRSYTKQDEKWIEGIADKLAETLKIVNF 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199285.5602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNT4_ECTSI4.140e-2576.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLX2_9STRA2.730e-1356.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K9PDZ5_9CYAN2.240e-1145.16Uncharacterized protein n=1 Tax=Calothrix sp. PCC ... [more]
A0A8J7KYG4_9NOST3.280e-1047.54Cofactor assembly of complex C subunit B n=1 Tax=A... [more]
K9ZGD1_ANACC6.090e-1047.37Uncharacterized protein n=2 Tax=Nostocaceae TaxID=... [more]
A0A563VQL8_9CYAN6.170e-1045.61Uncharacterized protein n=1 Tax=Hyella patelloides... [more]
A0A1Z4RSL5_9CHRO6.400e-1047.37Uncharacterized protein n=1 Tax=Chondrocystis sp. ... [more]
A0A0M5MH14_9NOSO6.550e-1043.55Uncharacterized protein n=7 Tax=Nostocales TaxID=1... [more]
UPI000B59D58C6.630e-1048.33cofactor assembly of complex C subunit B n=1 Tax=L... [more]
UPI0019E2E38C8.730e-1046.77Cofactor assembly of complex C subunit B n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199285contigH-elongata_contig199285:141..332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue7.8e-20
Seed eggNOG ortholog2880.D7FNT4
Preferred nameCCB4
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009987,GO:0010190,GO:0016043,GO:0017004,GO:0022607,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0071840
EggNOG free text desc.Cofactor assembly of complex C subunit B, CCB2/CCB4
EggNOG OGs28KGG@1,2QSXP@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF2930
Ec32 orthologEc-12_003460.1
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930124.8039749-CDS-H-elongata_contig199285:140..3321622930124.8039749-CDS-H-elongata_contig199285:140..332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199285 141..332 +
1691679290.44753-CDS-H-elongata_contig199285:140..3321691679290.44753-CDS-H-elongata_contig199285:140..332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199285 141..332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199285.5602.1prot_H-elongata_contig199285.5602.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199285 141..332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199285.5602.1

>prot_H-elongata_contig199285.5602.1 ID=prot_H-elongata_contig199285.5602.1|Name=mRNA_H-elongata_contig199285.5602.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
PGKIEFDYLPENCQAVLMLPVMKARVVIVVGTNRARAFTPRDIVWMKGLG
EKAALSLYEVEFA*
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mRNA from alignment at H-elongata_contig199285:141..332+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199285.5602.1 ID=mRNA_H-elongata_contig199285.5602.1|Name=mRNA_H-elongata_contig199285.5602.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig199285:141..332+ (Himanthalia elongata Himel1 dioecious)
CCCGGAAAGATCGAGTTCGACTACCTGCCCGAGAACTGCCAAGCGGTCTT GATGTTACCCGTGATGAAAGCACGTGTGGTTATCGTGGTAGGCACAAACA GGGCACGCGCTTTTACTCCAAGAGACATCGTGTGGATGAAGGGGCTGGGC GAAAAGGCAGCATTGTCATTGTACGAGGTAGAATTTGCCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig199285:141..332+

>mRNA_H-elongata_contig199285.5602.1 ID=mRNA_H-elongata_contig199285.5602.1|Name=mRNA_H-elongata_contig199285.5602.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig199285:141..332+ (Himanthalia elongata Himel1 dioecious)
CCCGGAAAGATCGAGTTCGACTACCTGCCCGAGAACTGCCAAGCGGTCTT
GATGTTACCCGTGATGAAAGCACGTGTGGTTATCGTGGTAGGCACAAACA
GGGCACGCGCTTTTACTCCAAGAGACATCGTGTGGATGAAGGGGCTGGGC
GAAAAGGCAGCATTGTCATTGTACGAGGTAGAATTTGCCTAGCCCGGAAA
GATCGAGTTCGACTACCTGCCCGAGAACTGCCAAGCGGTCTTGATGTTAC
CCGTGATGAAAGCACGTGTGGTTATCGTGGTAGGCACAAACAGGGCACGC
GCTTTTACTCCAAGAGACATCGTGTGGATGAAGGGGCTGGGCGAAAAGGC
AGCATTGTCATTGTACGAGGTAGAATTTGCCTAG
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