mRNA_H-elongata_contig199278.5601.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199278.5601.1
Unique NamemRNA_H-elongata_contig199278.5601.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig199278.5601.1 vs. uniprot
Match: D8LLK5_ECTSI (K+ homeostasis protein Kha1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK5_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.850e-17
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 GKIGGGATVARFFGMNYRESLAVGVLMNTRGLVELIILNIGLDAGVLSE 147
            GKIGGG+ VARFFGM  RESLAVGVLMNTRGLVELIILNIGLDAGVL+E
Sbjct:  355 GKIGGGSAVARFFGMTPRESLAVGVLMNTRGLVELIILNIGLDAGVLTE 403
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BLAST of mRNA_H-elongata_contig199278.5601.1 vs. uniprot
Match: A0A6H5KIL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL8_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.850e-16
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 GKIGGGATVARFFGMNYRESLAVGVLMNTRGLVELIILNIGLDAGVLSE 147
            GKIG G+ VARFFGM  RESLAVGVLMNTRGLVELIILNIGLDAGVL+E
Sbjct:  261 GKIGSGSAVARFFGMTPRESLAVGVLMNTRGLVELIILNIGLDAGVLTE 309
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BLAST of mRNA_H-elongata_contig199278.5601.1 vs. uniprot
Match: A0A2V8T769_9BACT (Cation/H(+) antiporter (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8T769_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 1.880e-12
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 GKIGGGATVARFFGMNYRESLAVGVLMNTRGLVELIILNIGLDAGVLS 144
            GK+GG    AR  GM++RES AVG+LMNTRGLVEL+ILNIGLD G+LS
Sbjct:  104 GKLGGSMMSARLNGMSWRESAAVGILMNTRGLVELVILNIGLDLGILS 151
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BLAST of mRNA_H-elongata_contig199278.5601.1 vs. uniprot
Match: A0A2N0BKF3_9LEPT (Sodium:proton antiporter n=2 Tax=Leptospira TaxID=171 RepID=A0A2N0BKF3_9LEPT)

HSP 1 Score: 68.9 bits (167), Expect = 2.150e-12
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 GKIGGGATVARFFGMNYRESLAVGVLMNTRGLVELIILNIGLDAGVLSE 147
            GK+GG A  AR  G N++ESL+VGVLMNTRGL+ELI+LNIG D G+LSE
Sbjct:  401 GKLGGSAVAARISGKNWKESLSVGVLMNTRGLMELIVLNIGYDLGILSE 449
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BLAST of mRNA_H-elongata_contig199278.5601.1 vs. uniprot
Match: A0A4V5PI35_9DELT (Cation/H(+) antiporter n=2 Tax=Polyangium aurulentum TaxID=2567896 RepID=A0A4V5PI35_9DELT)

HSP 1 Score: 67.8 bits (164), Expect = 5.500e-12
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 GKIGGGATVARFFGMNYRESLAVGVLMNTRGLVELIILNIGLDAGVLS 144
            GK GG A  AR  G+N+RES A+G+LMNTRGL+ELI+LNIGLD GV+S
Sbjct:  334 GKFGGSAVAARLTGINWRESTAIGILMNTRGLMELIVLNIGLDLGVIS 381
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BLAST of mRNA_H-elongata_contig199278.5601.1 vs. uniprot
Match: A0A418A9K8_9LEPT (Sodium:proton antiporter n=7 Tax=Leptospira TaxID=171 RepID=A0A418A9K8_9LEPT)

HSP 1 Score: 67.8 bits (164), Expect = 5.500e-12
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 GKIGGGATVARFFGMNYRESLAVGVLMNTRGLVELIILNIGLDAGVLSE 147
            GK+GG A  AR  G N+++SL+VGVLMNTRGL+ELI+LNIG D GVLSE
Sbjct:  406 GKLGGSAIAARMSGKNWKDSLSVGVLMNTRGLMELIVLNIGYDLGVLSE 454
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BLAST of mRNA_H-elongata_contig199278.5601.1 vs. uniprot
Match: A0A2W5SL51_9DELT (Cation/H(+) antiporter n=1 Tax=Archangium gephyra TaxID=48 RepID=A0A2W5SL51_9DELT)

HSP 1 Score: 67.4 bits (163), Expect = 7.510e-12
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 GKIGGGATVARFFGMNYRESLAVGVLMNTRGLVELIILNIGLDAGVLS 144
            GK GG A VAR  GM +RE+ AVG+LMNTRGL+ELI+LNIGLD GV+S
Sbjct:  334 GKFGGSAVVARLTGMRWREASAVGILMNTRGLMELIVLNIGLDLGVIS 381
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BLAST of mRNA_H-elongata_contig199278.5601.1 vs. uniprot
Match: A0A2M9YY45_9LEPT (Sodium:proton antiporter n=5 Tax=Leptospira TaxID=171 RepID=A0A2M9YY45_9LEPT)

HSP 1 Score: 67.4 bits (163), Expect = 7.510e-12
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 GKIGGGATVARFFGMNYRESLAVGVLMNTRGLVELIILNIGLDAGVLSE 147
            GK+GG A  AR  G N+++SLA+G+LMNTRGL+ELI+LNIG D GVLSE
Sbjct:  406 GKLGGSAIAARLSGKNWKDSLAIGMLMNTRGLMELIVLNIGYDLGVLSE 454
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BLAST of mRNA_H-elongata_contig199278.5601.1 vs. uniprot
Match: UPI00198901FD (Cation:proton antiporter n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=UPI00198901FD)

HSP 1 Score: 65.5 bits (158), Expect = 9.260e-12
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 GKIGGGATVARFFGMNYRESLAVGVLMNTRGLVELIILNIGLDAGVLS 144
            GK+GG    AR  GM +RES A+GVLMNTRGL+ELI+LN+GLD GV+S
Sbjct:  104 GKLGGSTLAARLTGMGWRESFALGVLMNTRGLMELIVLNVGLDLGVIS 151
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BLAST of mRNA_H-elongata_contig199278.5601.1 vs. uniprot
Match: A0A7Y8NV35_9BACT (Cation:proton antiporter n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7Y8NV35_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 1.030e-11
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 GKIGGGATVARFFGMNYRESLAVGVLMNTRGLVELIILNIGLDAGVLS 144
            GK+GG A  ARF GMN+++SL++GVLMNTRGL+ELI+LNIG D G+LS
Sbjct:  398 GKLGGSALGARFGGMNWKDSLSLGVLMNTRGLMELIVLNIGYDLGILS 445
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199278.5601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLK5_ECTSI2.850e-1789.80K+ homeostasis protein Kha1 n=1 Tax=Ectocarpus sil... [more]
A0A6H5KIL8_9PHAE1.850e-1687.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V8T769_9BACT1.880e-1270.83Cation/H(+) antiporter (Fragment) n=1 Tax=Acidobac... [more]
A0A2N0BKF3_9LEPT2.150e-1269.39Sodium:proton antiporter n=2 Tax=Leptospira TaxID=... [more]
A0A4V5PI35_9DELT5.500e-1268.75Cation/H(+) antiporter n=2 Tax=Polyangium aurulent... [more]
A0A418A9K8_9LEPT5.500e-1269.39Sodium:proton antiporter n=7 Tax=Leptospira TaxID=... [more]
A0A2W5SL51_9DELT7.510e-1270.83Cation/H(+) antiporter n=1 Tax=Archangium gephyra ... [more]
A0A2M9YY45_9LEPT7.510e-1267.35Sodium:proton antiporter n=5 Tax=Leptospira TaxID=... [more]
UPI00198901FD9.260e-1266.67Cation:proton antiporter n=1 Tax=Myxococcales bact... [more]
A0A7Y8NV35_9BACT1.030e-1168.75Cation:proton antiporter n=1 Tax=Bacteroidetes bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199278contigH-elongata_contig199278:287..433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue3.7e-14
Seed eggNOG ortholog2880.D8LLK5
EggNOG free text desc.solute:proton antiporter activity
EggNOG OGsCOG0475@1,KOG1650@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930124.7622614-CDS-H-elongata_contig199278:286..4331622930124.7622614-CDS-H-elongata_contig199278:286..433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199278 287..433 -
1691679290.4346921-CDS-H-elongata_contig199278:286..4331691679290.4346921-CDS-H-elongata_contig199278:286..433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199278 287..433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199278.5601.1prot_H-elongata_contig199278.5601.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199278 287..433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199278.5601.1

>prot_H-elongata_contig199278.5601.1 ID=prot_H-elongata_contig199278.5601.1|Name=mRNA_H-elongata_contig199278.5601.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
GKIGGGATVARFFGMNYRESLAVGVLMNTRGLVELIILNIGLDAGVLSE
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mRNA from alignment at H-elongata_contig199278:287..433-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199278.5601.1 ID=mRNA_H-elongata_contig199278.5601.1|Name=mRNA_H-elongata_contig199278.5601.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig199278:287..433- (Himanthalia elongata Himel1 dioecious)
GGCAAGATCGGCGGTGGAGCGACCGTTGCTAGATTCTTCGGTATGAACTA
CCGGGAATCGCTGGCCGTGGGCGTCCTGATGAATACGCGAGGCCTCGTGG
AGCTCATCATCCTCAACATTGGCCTCGACGCGGGAGTGCTCTCGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig199278:287..433-

>mRNA_H-elongata_contig199278.5601.1 ID=mRNA_H-elongata_contig199278.5601.1|Name=mRNA_H-elongata_contig199278.5601.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig199278:287..433- (Himanthalia elongata Himel1 dioecious)
GGCAAGATCGGCGGTGGAGCGACCGTTGCTAGATTCTTCGGTATGAACTA
CCGGGAATCGCTGGCCGTGGGCGTCCTGATGAATACGCGAGGCCTCGTGG
AGCTCATCATCCTCAACATTGGCCTCGACGCGGGAGTGCTCTCGGAGGGC
AAGATCGGCGGTGGAGCGACCGTTGCTAGATTCTTCGGTATGAACTACCG
GGAATCGCTGGCCGTGGGCGTCCTGATGAATACGCGAGGCCTCGTGGAGC
TCATCATCCTCAACATTGGCCTCGACGCGGGAGTGCTCTCGGAG
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