mRNA_H-elongata_contig199200.5597.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: D8LBZ8_ECTSI (Protochlorophyllide reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBZ8_ECTSI) HSP 1 Score: 164 bits (414), Expect = 3.290e-47 Identity = 76/93 (81.72%), Postives = 86/93 (92.47%), Query Frame = 1
Query: 1 QAHLGDLEGLAKNEAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFVTTE 279
QAHLGDL+GLAKNE MIDG+K+EPTKAYKDSKVCNVLMMREM+KR++ GMVVSALFPGCIAESPLFREKRGWFR FP+FQK+VT+Q V+ E
Sbjct: 239 QAHLGDLDGLAKNEPMIDGVKYEPTKAYKDSKVCNVLMMREMNKRYSSGGMVVSALFPGCIAESPLFREKRGWFRAGFPVFQKFVTRQLVSVE 331
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: A0A7S0M6J6_9CRYP (Protochlorophyllide reductase (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M6J6_9CRYP) HSP 1 Score: 132 bits (331), Expect = 2.410e-35 Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 1
Query: 1 QAHLGDLEGLAKNEA------MIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFV 270
QA LG+L GL ++A MIDG F+PTKAYKDSK CNVL M+EM +RFA +G+ SA+FPGC+AESPLFR+KR WFR FPLFQKY+TKQFV
Sbjct: 225 QADLGELSGLTGSDALRGAKSMIDGKAFDPTKAYKDSKACNVLTMKEMHRRFASKGVTFSAIFPGCVAESPLFRDKRDWFRFIFPLFQKYITKQFV 320
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: S0F3U3_CHOCR (Protochlorophyllide reductase n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F3U3_CHOCR) HSP 1 Score: 129 bits (323), Expect = 7.550e-34 Identity = 62/97 (63.92%), Postives = 73/97 (75.26%), Query Frame = 1
Query: 1 QAHLGDLEGLAKN----EAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFVTTE 279
QA LG+LEGL IDG KFEPTKAYKDSKVCN+L M EM++R+ +G+ SA+FPGCIA+S LFREKRGWFR FPLFQ+Y+TKQ V E
Sbjct: 219 QADLGELEGLVGGFKTLPGTIDGKKFEPTKAYKDSKVCNILTMTEMNRRYGTDGVTFSAVFPGCIAQSELFREKRGWFRALFPLFQRYITKQLVPVE 315
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: A0A1X6NIP3_PORUM (Protochlorophyllide reductase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NIP3_PORUM) HSP 1 Score: 126 bits (317), Expect = 1.840e-33 Identity = 62/98 (63.27%), Postives = 76/98 (77.55%), Query Frame = 1
Query: 1 QAHLGDLEGL-----AKNEAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFVTTE 279
QA+LGDL GL + +DG KFEPTKAYKDSKVCNVL M + +R A +G++VSA++PGCIA+S LFR+KRGWFR FPLFQKYVTKQ+V+ E
Sbjct: 159 QANLGDLAGLEAAVAGTSSGTVDGGKFEPTKAYKDSKVCNVLTMTALHERAAKDGVIVSAVYPGCIADSELFRQKRGWFRWFFPLFQKYVTKQYVSEE 256
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: A0A7S1TKW4_9RHOD (Protochlorophyllide reductase n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKW4_9RHOD) HSP 1 Score: 128 bits (321), Expect = 2.800e-33 Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 1
Query: 1 QAHLGDLEGLAKN---EA-MIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFVTTE 279
QA LG L+GL K EA MIDG KFEPTKAYKDSKVCN + M++M R++ G+VVSALFPGC+A S LFREKRGWF + FP FQK +TKQ+VTT+
Sbjct: 231 QADLGQLQGLLKGLGEEAPMIDGKKFEPTKAYKDSKVCNAITMKQMSDRYSPRGVVVSALFPGCVASSGLFREKRGWFNSFFPWFQKNITKQYVTTQ 327
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: A0A5J4YUK9_PORPP (Protochlorophyllide reductase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YUK9_PORPP) HSP 1 Score: 125 bits (313), Expect = 3.900e-32 Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 1
Query: 1 QAHLGDLEGLAKN----EAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFVTTE 279
QA LG L GL K AMIDG KFEPTKAYKDSKVCN + M++M R+ G+VVSA+FPGC+A S LFREKRGWF + FP FQK +TKQ+V+ E
Sbjct: 228 QADLGRLAGLEKGLCGENAMIDGKKFEPTKAYKDSKVCNAITMKQMSDRYGPRGVVVSAMFPGCVASSGLFREKRGWFNSFFPWFQKNITKQYVSVE 324
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: A0A2V3J6B4_9FLOR (Protochlorophyllide reductase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6B4_9FLOR) HSP 1 Score: 124 bits (310), Expect = 5.510e-32 Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 1
Query: 1 QAHLGDLEGLAKN----EAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFVTTE 279
QA LG L+G++ IDG FEPTKAYKDSKVCN+L M+EM +R A G+ +A+FPGCIA+S LFREKRGWFR FPLFQKYVT+Q V E
Sbjct: 213 QADLGQLQGMSSGFNTLPGTIDGKAFEPTKAYKDSKVCNILTMKEMHRRHASSGVAFTAIFPGCIAQSELFREKRGWFRWFFPLFQKYVTRQMVPVE 309
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: A0A6T8NUL2_HEMAN (Protochlorophyllide reductase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8NUL2_HEMAN) HSP 1 Score: 126 bits (317), Expect = 5.740e-32 Identity = 61/91 (67.03%), Postives = 77/91 (84.62%), Query Frame = 1
Query: 4 AHLGDLEGLAKNEAM-IDGMKFEPTKAYKDSKVCNVLMMREMDKRFA-GEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFV 270
A LG+LEG+ + + IDG ++EPTK+YK+SKVCN ++MREM+KR+A G+ V+A+FPGCIAESPLFR+KRGWFR FPLFQKYVTKQFV
Sbjct: 243 ADLGNLEGMKQGMSYTIDGGEYEPTKSYKESKVCNAIVMREMNKRYAESRGITVNAMFPGCIAESPLFRQKRGWFRWLFPLFQKYVTKQFV 333
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: L1JNU2_GUITC (Protochlorophyllide reductase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JNU2_GUITC) HSP 1 Score: 126 bits (317), Expect = 6.930e-32 Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = 1
Query: 4 AHLGDLEGLAKN-EAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFA-GEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFVTTEAS 285
A LG LEG+A ++ IDG KFEPTKAYKDSKVCN ++MREM+KR+ G++V+A+FPGCIAESPLFR+KR WFR FP FQK +TKQFV E +
Sbjct: 246 ADLGKLEGMAAGMKSTIDGGKFEPTKAYKDSKVCNAIVMREMNKRYGKSRGLIVNAMFPGCIAESPLFRQKRAWFRWLFPKFQKAITKQFVPEEVA 341
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: A0A7S0Z1U2_9CRYP (Protochlorophyllide reductase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z1U2_9CRYP) HSP 1 Score: 125 bits (315), Expect = 1.130e-31 Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 1
Query: 4 AHLGDLEGLAKN-EAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFA-GEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFV 270
A LG LEG+ K IDG ++EPTKAYK+SKVCN ++MREM+KR+A G+ V+A+FPGCIAESPLFR+KR WFR FPLFQKYVTKQFV
Sbjct: 252 ADLGTLEGMKKGMTTTIDGGEYEPTKAYKESKVCNAIVMREMNKRYAESRGITVNAMFPGCIAESPLFRQKRDWFRWLFPLFQKYVTKQFV 342 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig199200.5597.1 >prot_H-elongata_contig199200.5597.1 ID=prot_H-elongata_contig199200.5597.1|Name=mRNA_H-elongata_contig199200.5597.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp QAHLGDLEGLAKNEAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEGback to top mRNA from alignment at H-elongata_contig199200:319..924- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig199200.5597.1 ID=mRNA_H-elongata_contig199200.5597.1|Name=mRNA_H-elongata_contig199200.5597.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at H-elongata_contig199200:319..924- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig199200:319..924- >mRNA_H-elongata_contig199200.5597.1 ID=mRNA_H-elongata_contig199200.5597.1|Name=mRNA_H-elongata_contig199200.5597.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig199200:319..924- (Himanthalia elongata Himel1 dioecious)back to top |