mRNA_H-elongata_contig199200.5597.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199200.5597.1
Unique NamemRNA_H-elongata_contig199200.5597.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: D8LBZ8_ECTSI (Protochlorophyllide reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBZ8_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 3.290e-47
Identity = 76/93 (81.72%), Postives = 86/93 (92.47%), Query Frame = 1
Query:    1 QAHLGDLEGLAKNEAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFVTTE 279
            QAHLGDL+GLAKNE MIDG+K+EPTKAYKDSKVCNVLMMREM+KR++  GMVVSALFPGCIAESPLFREKRGWFR  FP+FQK+VT+Q V+ E
Sbjct:  239 QAHLGDLDGLAKNEPMIDGVKYEPTKAYKDSKVCNVLMMREMNKRYSSGGMVVSALFPGCIAESPLFREKRGWFRAGFPVFQKFVTRQLVSVE 331          
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: A0A7S0M6J6_9CRYP (Protochlorophyllide reductase (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M6J6_9CRYP)

HSP 1 Score: 132 bits (331), Expect = 2.410e-35
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    1 QAHLGDLEGLAKNEA------MIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFV 270
            QA LG+L GL  ++A      MIDG  F+PTKAYKDSK CNVL M+EM +RFA +G+  SA+FPGC+AESPLFR+KR WFR  FPLFQKY+TKQFV
Sbjct:  225 QADLGELSGLTGSDALRGAKSMIDGKAFDPTKAYKDSKACNVLTMKEMHRRFASKGVTFSAIFPGCVAESPLFRDKRDWFRFIFPLFQKYITKQFV 320          
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: S0F3U3_CHOCR (Protochlorophyllide reductase n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F3U3_CHOCR)

HSP 1 Score: 129 bits (323), Expect = 7.550e-34
Identity = 62/97 (63.92%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    1 QAHLGDLEGLAKN----EAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFVTTE 279
            QA LG+LEGL          IDG KFEPTKAYKDSKVCN+L M EM++R+  +G+  SA+FPGCIA+S LFREKRGWFR  FPLFQ+Y+TKQ V  E
Sbjct:  219 QADLGELEGLVGGFKTLPGTIDGKKFEPTKAYKDSKVCNILTMTEMNRRYGTDGVTFSAVFPGCIAQSELFREKRGWFRALFPLFQRYITKQLVPVE 315          
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: A0A1X6NIP3_PORUM (Protochlorophyllide reductase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NIP3_PORUM)

HSP 1 Score: 126 bits (317), Expect = 1.840e-33
Identity = 62/98 (63.27%), Postives = 76/98 (77.55%), Query Frame = 1
Query:    1 QAHLGDLEGL-----AKNEAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFVTTE 279
            QA+LGDL GL       +   +DG KFEPTKAYKDSKVCNVL M  + +R A +G++VSA++PGCIA+S LFR+KRGWFR  FPLFQKYVTKQ+V+ E
Sbjct:  159 QANLGDLAGLEAAVAGTSSGTVDGGKFEPTKAYKDSKVCNVLTMTALHERAAKDGVIVSAVYPGCIADSELFRQKRGWFRWFFPLFQKYVTKQYVSEE 256          
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: A0A7S1TKW4_9RHOD (Protochlorophyllide reductase n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKW4_9RHOD)

HSP 1 Score: 128 bits (321), Expect = 2.800e-33
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 1
Query:    1 QAHLGDLEGLAKN---EA-MIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFVTTE 279
            QA LG L+GL K    EA MIDG KFEPTKAYKDSKVCN + M++M  R++  G+VVSALFPGC+A S LFREKRGWF + FP FQK +TKQ+VTT+
Sbjct:  231 QADLGQLQGLLKGLGEEAPMIDGKKFEPTKAYKDSKVCNAITMKQMSDRYSPRGVVVSALFPGCVASSGLFREKRGWFNSFFPWFQKNITKQYVTTQ 327          
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: A0A5J4YUK9_PORPP (Protochlorophyllide reductase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YUK9_PORPP)

HSP 1 Score: 125 bits (313), Expect = 3.900e-32
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 1
Query:    1 QAHLGDLEGLAKN----EAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFVTTE 279
            QA LG L GL K      AMIDG KFEPTKAYKDSKVCN + M++M  R+   G+VVSA+FPGC+A S LFREKRGWF + FP FQK +TKQ+V+ E
Sbjct:  228 QADLGRLAGLEKGLCGENAMIDGKKFEPTKAYKDSKVCNAITMKQMSDRYGPRGVVVSAMFPGCVASSGLFREKRGWFNSFFPWFQKNITKQYVSVE 324          
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: A0A2V3J6B4_9FLOR (Protochlorophyllide reductase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6B4_9FLOR)

HSP 1 Score: 124 bits (310), Expect = 5.510e-32
Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    1 QAHLGDLEGLAKN----EAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFVTTE 279
            QA LG L+G++         IDG  FEPTKAYKDSKVCN+L M+EM +R A  G+  +A+FPGCIA+S LFREKRGWFR  FPLFQKYVT+Q V  E
Sbjct:  213 QADLGQLQGMSSGFNTLPGTIDGKAFEPTKAYKDSKVCNILTMKEMHRRHASSGVAFTAIFPGCIAQSELFREKRGWFRWFFPLFQKYVTRQMVPVE 309          
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: A0A6T8NUL2_HEMAN (Protochlorophyllide reductase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8NUL2_HEMAN)

HSP 1 Score: 126 bits (317), Expect = 5.740e-32
Identity = 61/91 (67.03%), Postives = 77/91 (84.62%), Query Frame = 1
Query:    4 AHLGDLEGLAKNEAM-IDGMKFEPTKAYKDSKVCNVLMMREMDKRFA-GEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFV 270
            A LG+LEG+ +  +  IDG ++EPTK+YK+SKVCN ++MREM+KR+A   G+ V+A+FPGCIAESPLFR+KRGWFR  FPLFQKYVTKQFV
Sbjct:  243 ADLGNLEGMKQGMSYTIDGGEYEPTKSYKESKVCNAIVMREMNKRYAESRGITVNAMFPGCIAESPLFRQKRGWFRWLFPLFQKYVTKQFV 333          
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: L1JNU2_GUITC (Protochlorophyllide reductase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JNU2_GUITC)

HSP 1 Score: 126 bits (317), Expect = 6.930e-32
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = 1
Query:    4 AHLGDLEGLAKN-EAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFA-GEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFVTTEAS 285
            A LG LEG+A   ++ IDG KFEPTKAYKDSKVCN ++MREM+KR+    G++V+A+FPGCIAESPLFR+KR WFR  FP FQK +TKQFV  E +
Sbjct:  246 ADLGKLEGMAAGMKSTIDGGKFEPTKAYKDSKVCNAIVMREMNKRYGKSRGLIVNAMFPGCIAESPLFRQKRAWFRWLFPKFQKAITKQFVPEEVA 341          
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Match: A0A7S0Z1U2_9CRYP (Protochlorophyllide reductase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z1U2_9CRYP)

HSP 1 Score: 125 bits (315), Expect = 1.130e-31
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 1
Query:    4 AHLGDLEGLAKN-EAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFA-GEGMVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFV 270
            A LG LEG+ K     IDG ++EPTKAYK+SKVCN ++MREM+KR+A   G+ V+A+FPGCIAESPLFR+KR WFR  FPLFQKYVTKQFV
Sbjct:  252 ADLGTLEGMKKGMTTTIDGGEYEPTKAYKESKVCNAIVMREMNKRYAESRGITVNAMFPGCIAESPLFRQKRDWFRWLFPLFQKYVTKQFV 342          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199200.5597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBZ8_ECTSI3.290e-4781.72Protochlorophyllide reductase n=2 Tax=Ectocarpus T... [more]
A0A7S0M6J6_9CRYP2.410e-3565.63Protochlorophyllide reductase (Fragment) n=1 Tax=C... [more]
S0F3U3_CHOCR7.550e-3463.92Protochlorophyllide reductase n=1 Tax=Chondrus cri... [more]
A0A1X6NIP3_PORUM1.840e-3363.27Protochlorophyllide reductase n=1 Tax=Porphyra umb... [more]
A0A7S1TKW4_9RHOD2.800e-3365.98Protochlorophyllide reductase n=1 Tax=Erythrolobus... [more]
A0A5J4YUK9_PORPP3.900e-3262.89Protochlorophyllide reductase n=1 Tax=Porphyridium... [more]
A0A2V3J6B4_9FLOR5.510e-3261.86Protochlorophyllide reductase n=1 Tax=Gracilariops... [more]
A0A6T8NUL2_HEMAN5.740e-3267.03Protochlorophyllide reductase n=1 Tax=Hemiselmis a... [more]
L1JNU2_GUITC6.930e-3264.58Protochlorophyllide reductase n=1 Tax=Guillardia t... [more]
A0A7S0Z1U2_9CRYP1.130e-3168.13Protochlorophyllide reductase n=1 Tax=Hemiselmis t... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199200contigH-elongata_contig199200:319..924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.5
Seed ortholog evalue2.6e-38
Seed eggNOG ortholog2880.D8LBZ8
KEGG rclassRC01008
KEGG koko:K00218
KEGG ReactionR03845,R06286
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
EC1.3.1.33
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930124.3822615-CDS-H-elongata_contig199200:318..5341622930124.3822615-CDS-H-elongata_contig199200:318..534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199200 319..534 -
1691679290.3454163-CDS-H-elongata_contig199200:318..5341691679290.3454163-CDS-H-elongata_contig199200:318..534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199200 319..534 -
1622930124.3930395-CDS-H-elongata_contig199200:846..9241622930124.3930395-CDS-H-elongata_contig199200:846..924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199200 847..924 -
1691679290.3614738-CDS-H-elongata_contig199200:846..9241691679290.3614738-CDS-H-elongata_contig199200:846..924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199200 847..924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199200.5597.1prot_H-elongata_contig199200.5597.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199200 319..924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199200.5597.1

>prot_H-elongata_contig199200.5597.1 ID=prot_H-elongata_contig199200.5597.1|Name=mRNA_H-elongata_contig199200.5597.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
QAHLGDLEGLAKNEAMIDGMKFEPTKAYKDSKVCNVLMMREMDKRFAGEG
MVVSALFPGCIAESPLFREKRGWFRTAFPLFQKYVTKQFVTTEASVY*
back to top

mRNA from alignment at H-elongata_contig199200:319..924-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199200.5597.1 ID=mRNA_H-elongata_contig199200.5597.1|Name=mRNA_H-elongata_contig199200.5597.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at H-elongata_contig199200:319..924- (Himanthalia elongata Himel1 dioecious)
CAGGCGCACCTGGGAGATCTGGAGGGACTCGCGAAGAACGAGGCCATGAT CGACGGGATGAAGTTCGAGCCCACGAAGGTGAGGAACGGGTCAGGAAGAG GCGAGCCGAGGTCGCATTTCGACGGTTTTTCTCGTGCTCTCTTTGTCATA GTATTTCTTGTCTACGGAGGGTTAGGGCGTAGGTAAGGAACTCCCACTTG AATCTCGATCTTATTCTCCCTGACCTGAAAAACAAATAAACCTCCCCCCC ATCCCCTGACATAATAATGCCGCTCTTGTTCTACCTCGAGTTTTTGCTTT GGAGGGAAAAGTAAAGTCAGCCAACTATCATATATACACACATACGCACA CAGACATGATACACGTAACACACCCACACAAACTGGACAGGCTTACAAGG ACTCTAAGGTTTGCAACGTGTTGATGATGCGGGAGATGGACAAGCGGTTC GCCGGCGAGGGCATGGTGGTGAGCGCGCTGTTCCCCGGGTGCATCGCCGA GTCGCCCCTGTTCCGGGAGAAGCGCGGGTGGTTCCGGACAGCCTTCCCCC TGTTTCAGAAATACGTCACGAAGCAGTTCGTGACCACCGAGGCGAGTGTA TATTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig199200:319..924-

>mRNA_H-elongata_contig199200.5597.1 ID=mRNA_H-elongata_contig199200.5597.1|Name=mRNA_H-elongata_contig199200.5597.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig199200:319..924- (Himanthalia elongata Himel1 dioecious)
CAGGCGCACCTGGGAGATCTGGAGGGACTCGCGAAGAACGAGGCCATGAT
CGACGGGATGAAGTTCGAGCCCACGAAGCAGGCGCACCTGGGAGATCTGG
AGGGACTCGCGAAGAACGAGGCCATGATCGACGGGATGAAGTTCGAGCCC
ACGAAGGCTTACAAGGACTCTAAGGTTTGCAACGTGTTGATGATGCGGGA
GATGGACAAGCGGTTCGCCGGCGAGGGCATGGTGGTGAGCGCGCTGTTCC
CCGGGTGCATCGCCGAGTCGCCCCTGTTCCGGGAGAAGCGCGGGTGGTTC
CGGACAGCCTTCCCCCTGTTTCAGAAATACGTCACGAAGCAGTTCGTGAC
CACCGAGGCGAGTGTATATTAGGCTTACAAGGACTCTAAGGTTTGCAACG
TGTTGATGATGCGGGAGATGGACAAGCGGTTCGCCGGCGAGGGCATGGTG
GTGAGCGCGCTGTTCCCCGGGTGCATCGCCGAGTCGCCCCTGTTCCGGGA
GAAGCGCGGGTGGTTCCGGACAGCCTTCCCCCTGTTTCAGAAATACGTCA
CGAAGCAGTTCGTGACCACCGAGGCGAGTGTATATTAG
back to top