mRNA_H-elongata_contig199191.5596.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199191.5596.1
Unique NamemRNA_H-elongata_contig199191.5596.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199191.5596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199191contigH-elongata_contig199191:245..772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size530
Cds size528
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930124.3387032-CDS-H-elongata_contig199191:244..7721622930124.3387032-CDS-H-elongata_contig199191:244..772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199191 245..772 +
1691679290.3276772-CDS-H-elongata_contig199191:244..7721691679290.3276772-CDS-H-elongata_contig199191:244..772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199191 245..772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199191.5596.1prot_H-elongata_contig199191.5596.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199191 245..772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199191.5596.1

>prot_H-elongata_contig199191.5596.1 ID=prot_H-elongata_contig199191.5596.1|Name=mRNA_H-elongata_contig199191.5596.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
LPWPASLPSPLTPAVPASRRGREGLAPLPAPSPRHSRPPGCLREHHHHFV
KDGAFRLSFQYLRQGLAPPVRYSPSRRSTPVMPRALSATSHGCGRPSLIE
QGSHHHYRRRCHRLSLRRSPSLIAQQNRRRYTWAMPPLWRASTRLAGGGL
SLLDARLLSYASIHFVPSLSAAIHL*
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mRNA from alignment at H-elongata_contig199191:245..772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199191.5596.1 ID=mRNA_H-elongata_contig199191.5596.1|Name=mRNA_H-elongata_contig199191.5596.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=528bp|location=Sequence derived from alignment at H-elongata_contig199191:245..772+ (Himanthalia elongata Himel1 dioecious)
CTTCCGTGGCCGGCCTCACTGCCGTCACCGCTCACGCCGGCCGTGCCAGC
CAGCCGGCGTGGTAGGGAGGGCCTCGCTCCCCTCCCTGCTCCTAGCCCGC
GCCATTCCCGGCCGCCTGGCTGTCTCCGGGAGCACCACCACCACTTCGTC
AAGGATGGAGCCTTCCGGCTCTCTTTCCAGTACCTTCGGCAGGGTCTTGC
ACCTCCCGTCCGCTACAGTCCTTCGCGACGGAGTACGCCGGTTATGCCAC
GAGCCTTATCTGCCACCTCTCATGGTTGTGGGCGTCCCTCCCTGATAGAA
CAGGGGTCGCACCACCATTATCGCCGGCGTTGCCATCGCCTAAGCTTGCG
ACGGTCTCCGAGCCTTATTGCTCAGCAGAACCGCCGCCGCTATACGTGGG
CAATGCCCCCCCTCTGGAGGGCTTCCACTCGACTGGCGGGCGGAGGCCTC
AGCCTCCTGGATGCGCGTCTTCTCTCATACGCGTCCATCCACTTCGTGCC
GTCGCTCTCGGCGGCGATTCACTTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig199191:245..772+

>mRNA_H-elongata_contig199191.5596.1 ID=mRNA_H-elongata_contig199191.5596.1|Name=mRNA_H-elongata_contig199191.5596.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig199191:245..772+ (Himanthalia elongata Himel1 dioecious)
CTTCCGTGGCCGGCCTCACTGCCGTCACCGCTCACGCCGGCCGTGCCAGC
CAGCCGGCGTGGTAGGGAGGGCCTCGCTCCCCTCCCTGCTCCTAGCCCGC
GCCATTCCCGGCCGCCTGGCTGTCTCCGGGAGCACCACCACCACTTCGTC
AAGGATGGAGCCTTCCGGCTCTCTTTCCAGTACCTTCGGCAGGGTCTTGC
ACCTCCCGTCCGCTACAGTCCTTCGCGACGGAGTACGCCGGTTATGCCAC
GAGCCTTATCTGCCACCTCTCATGGTTGTGGGCGTCCCTCCCTGATAGAA
CAGGGGTCGCACCACCATTATCGCCGGCGTTGCCATCGCCTAAGCTTGCG
ACGGTCTCCGAGCCTTATTGCTCAGCAGAACCGCCGCCGCTATACGTGGG
CAATGCCCCCCCTCTGGAGGGCTTCCACTCGACTGGCGGGCGGAGGCCTC
AGCCTCCTGGATGCGCGTCTTCTCTCATACGCGTCCATCCACTTCGTGCC
GTCGCTCTCGGCGGCGATTCACTTATAGCTTCCGTGGCCGGCCTCACTGC
CGTCACCGCTCACGCCGGCCGTGCCAGCCAGCCGGCGTGGTAGGGAGGGC
CTCGCTCCCCTCCCTGCTCCTAGCCCGCGCCATTCCCGGCCGCCTGGCTG
TCTCCGGGAGCACCACCACCACTTCGTCAAGGATGGAGCCTTCCGGCTCT
CTTTCCAGTACCTTCGGCAGGGTCTTGCACCTCCCGTCCGCTACAGTCCT
TCGCGACGGAGTACGCCGGTTATGCCACGAGCCTTATCTGCCACCTCTCA
TGGTTGTGGGCGTCCCTCCCTGATAGAACAGGGGTCGCACCACCATTATC
GCCGGCGTTGCCATCGCCTAAGCTTGCGACGGTCTCCGAGCCTTATTGCT
CAGCAGAACCGCCGCCGCTATACGTGGGCAATGCCCCCCCTCTGGAGGGC
TTCCACTCGACTGGCGGGCGGAGGCCTCAGCCTCCTGGATGCGCGTCTTC
TCTCATACGCGTCCATCCACTTCGTGCCGTCGCTCTCGGCGGCGATTCAC
TTATAG
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