mRNA_H-elongata_contig199183.5595.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199183.5595.1
Unique NamemRNA_H-elongata_contig199183.5595.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig199183.5595.1 vs. uniprot
Match: D8LHU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU6_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 2.500e-28
Identity = 59/76 (77.63%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:    1 ALCQQILDDWTAKFSPLGVRLAELTSDSMTPTG----SLRDLASADIILTTPEKWDSVTRRWKEHAFLVRERALFL 216
            ALCQQ LDDWTAKFSPLG+RLAELTSDS +       SLRDLASAD+ILTTPEKWDS+TRRWKEHAFLV   AL L
Sbjct:  335 ALCQQTLDDWTAKFSPLGIRLAELTSDSTSGPSKGSVSLRDLASADVILTTPEKWDSITRRWKEHAFLVGTVALVL 410
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BLAST of mRNA_H-elongata_contig199183.5595.1 vs. uniprot
Match: A0A6H5KHN0_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN0_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 7.360e-28
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 ALCQQILDDWTAKFSPLGVRLAELTSDSMTPTG----SLRDLASADIILTTPEKWDSVTRRWKEHAFLV 195
            ALCQQ LDDWTAKFSPLG+RLAELTSDS +       SLRDLASAD+ILTTPEKWDS+TRRWKEHAFLV
Sbjct:  407 ALCQQTLDDWTAKFSPLGIRLAELTSDSTSGPSKGSVSLRDLASADVILTTPEKWDSITRRWKEHAFLV 475
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BLAST of mRNA_H-elongata_contig199183.5595.1 vs. uniprot
Match: A0A836C995_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C995_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.580e-21
Identity = 49/74 (66.22%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:    1 ALCQQILDDWTAKFSPLGVRLAELTSDSMTPTGS--LRDLASADIILTTPEKWDSVTRRWKEHAFLVRERALFL 216
            ALCQQ LD WTAKF+PLG+RLAE+T DS  P G+  LRD+A+ADIILTTPEKWDS TR   E AFL+    L L
Sbjct:  148 ALCQQTLDQWTAKFAPLGLRLAEVTGDSAGPIGAAALRDIAAADIILTTPEKWDSATRMSHERAFLIGSVRLLL 221
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BLAST of mRNA_H-elongata_contig199183.5595.1 vs. uniprot
Match: A0A0A9XP94_LYGHE (Putative ATP-dependent DNA helicase HFM1 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XP94_LYGHE)

HSP 1 Score: 83.2 bits (204), Expect = 5.150e-18
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 ALCQQILDDWTAKFSPLGVRLAELTSDSMTPTGSLRDLASADIILTTPEKWDSVTRRWKEHAFLVRERALFL 216
            ALC +   DWT+KF  LG+R AE+T DS T    L+ + + D+ILTTPEKWDS+TRRWK+HA LV+   LFL
Sbjct:   92 ALCSERYSDWTSKFRSLGIRTAEVTGDS-TDLVDLKTIENLDLILTTPEKWDSMTRRWKDHAGLVQLIKLFL 162
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BLAST of mRNA_H-elongata_contig199183.5595.1 vs. uniprot
Match: A0A6A7AAZ2_9PLEO (Uncharacterized protein n=1 Tax=Ophiobolus disseminans TaxID=1469910 RepID=A0A6A7AAZ2_9PLEO)

HSP 1 Score: 82.0 bits (201), Expect = 1.450e-16
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 ALCQQILDDWTAKFSPLGVRLAELTSDSMTPTGSLRDLASADIILTTPEKWDSVTRRWKEHAFLVRERALFL 216
            ALC +   DW AKF+P+G++ AELT DS      +R++ SA+II+TTPEKWDS+TR+WK+H  L+R   LFL
Sbjct:  762 ALCAERQRDWEAKFTPIGLKCAELTGDS--DASDVRNVQSANIIITTPEKWDSITRKWKDHEKLMRLIKLFL 831
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BLAST of mRNA_H-elongata_contig199183.5595.1 vs. uniprot
Match: Q0UNS2_PHANO (Uncharacterized protein n=2 Tax=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) TaxID=321614 RepID=Q0UNS2_PHANO)

HSP 1 Score: 81.6 bits (200), Expect = 1.970e-16
Identity = 38/72 (52.78%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 ALCQQILDDWTAKFSPLGVRLAELTSDSMTPTGSLRDLASADIILTTPEKWDSVTRRWKEHAFLVRERALFL 216
            ALC +   DW AKF+P+G++ AELT DS      +R++ SA+II+TTPEKWDS+TR+WK+H  L+R   +FL
Sbjct:  113 ALCSERQRDWAAKFTPIGLKCAELTGDS--DASDVRNVQSANIIITTPEKWDSITRKWKDHEKLMRLIKVFL 182
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BLAST of mRNA_H-elongata_contig199183.5595.1 vs. uniprot
Match: A0A6A6JLV3_9PLEO (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Westerdykella ornata TaxID=318751 RepID=A0A6A6JLV3_9PLEO)

HSP 1 Score: 80.9 bits (198), Expect = 3.680e-16
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:    1 ALCQQILDDWTAKFSPLGVRLAELTSDSMTPTGSLRDLASADIILTTPEKWDSVTRRWKEHAFLVRERALFL 216
            ALC +   DW  KFSPLG+   ELT DS     +LR + +ADII+TTPEKWDS+TR+WK+H  L+R   LFL
Sbjct:  283 ALCSERQRDWQKKFSPLGLTCVELTGDS--DASNLRTVQTADIIVTTPEKWDSITRKWKDHERLMRLVKLFL 352
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BLAST of mRNA_H-elongata_contig199183.5595.1 vs. uniprot
Match: UPI001E8EA6A2 (nucleotide-sugar transporter-domain-containing protein n=1 Tax=Alternaria rosae TaxID=1187941 RepID=UPI001E8EA6A2)

HSP 1 Score: 80.9 bits (198), Expect = 3.700e-16
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 ALCQQILDDWTAKFSPLGVRLAELTSDSMTPTGSLRDLASADIILTTPEKWDSVTRRWKEHAFLVRERALFL 216
            ALC +   DW AKF+ LG++ AELT DS    G LR++ SA+II+TTPEKWDS+TR+WK+H  L+R   +FL
Sbjct:  775 ALCAERQRDWDAKFNKLGLKCAELTGDS--DLGDLRNVQSANIIITTPEKWDSMTRKWKDHEKLMRLIRVFL 844
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BLAST of mRNA_H-elongata_contig199183.5595.1 vs. uniprot
Match: A0A4V1WRU8_ALTAL (ATP-dependent DNA helicase n=5 Tax=Alternaria TaxID=5598 RepID=A0A4V1WRU8_ALTAL)

HSP 1 Score: 80.5 bits (197), Expect = 5.030e-16
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 ALCQQILDDWTAKFSPLGVRLAELTSDSMTPTGSLRDLASADIILTTPEKWDSVTRRWKEHAFLVRERALFL 216
            ALC +   DW AKF+ LG++ A+LT DS    G LR++ SA+II+TTPEKWDS+TR+WK+H  L+R   +FL
Sbjct:  349 ALCSERQRDWEAKFNQLGLKCAQLTGDS--DAGDLRNVQSANIIITTPEKWDSMTRKWKDHEKLMRLIRVFL 418
[Close]
BLAST of mRNA_H-elongata_contig199183.5595.1 vs. uniprot
Match: A0A178ECV6_9PLEO (Uncharacterized protein n=1 Tax=Pyrenochaeta sp. DS3sAY3a TaxID=765867 RepID=A0A178ECV6_9PLEO)

HSP 1 Score: 80.5 bits (197), Expect = 5.050e-16
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:    1 ALCQQILDDWTAKFSPLGVRLAELTSDSMTPTGSLRDLASADIILTTPEKWDSVTRRWKEHAFLVRERALFL 216
            ALC +   DW  KF PLG++ AELT DS      LR++ SA+II+TTPEKWDS+TR+WK+H  L++   LFL
Sbjct:  713 ALCSERQRDWEIKFQPLGLKCAELTGDS--DASDLRNVQSANIIITTPEKWDSITRKWKDHDKLMKLVKLFL 782
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199183.5595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHU6_ECTSI2.500e-2877.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHN0_9PHAE7.360e-2881.16Helicase ATP-binding domain-containing protein n=1... [more]
A0A836C995_9STRA2.580e-2166.22P-loop containing nucleoside triphosphate hydrolas... [more]
A0A0A9XP94_LYGHE5.150e-1856.94Putative ATP-dependent DNA helicase HFM1 (Fragment... [more]
A0A6A7AAZ2_9PLEO1.450e-1654.17Uncharacterized protein n=1 Tax=Ophiobolus dissemi... [more]
Q0UNS2_PHANO1.970e-1652.78Uncharacterized protein n=2 Tax=Phaeosphaeria nodo... [more]
A0A6A6JLV3_9PLEO3.680e-1655.56P-loop containing nucleoside triphosphate hydrolas... [more]
UPI001E8EA6A23.700e-1655.56nucleotide-sugar transporter-domain-containing pro... [more]
A0A4V1WRU8_ALTAL5.030e-1654.17ATP-dependent DNA helicase n=5 Tax=Alternaria TaxI... [more]
A0A178ECV6_9PLEO5.050e-1654.17Uncharacterized protein n=1 Tax=Pyrenochaeta sp. D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199183contigH-elongata_contig199183:627..842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue7.6e-24
Seed eggNOG ortholog2880.D8LHU6
Preferred nameHFM1
KEGG koko:K15271
GOsGO:0000003,GO:0000280,GO:0000712,GO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006310,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0034641,GO:0034645,GO:0035825,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0051026,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0061982,GO:0070013,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0098813,GO:0140013,GO:0140097,GO:0140098,GO:1901360,GO:1901576,GO:1903046
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0952@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHelicase, C-terminal
Ec32 orthologEc-18_000510.1
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930124.286817-CDS-H-elongata_contig199183:626..8421622930124.286817-CDS-H-elongata_contig199183:626..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199183 627..842 +
1691679290.303751-CDS-H-elongata_contig199183:626..8421691679290.303751-CDS-H-elongata_contig199183:626..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199183 627..842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199183.5595.1prot_H-elongata_contig199183.5595.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199183 627..842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199183.5595.1

>prot_H-elongata_contig199183.5595.1 ID=prot_H-elongata_contig199183.5595.1|Name=mRNA_H-elongata_contig199183.5595.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
ALCQQILDDWTAKFSPLGVRLAELTSDSMTPTGSLRDLASADIILTTPEK
WDSVTRRWKEHAFLVRERALFL
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mRNA from alignment at H-elongata_contig199183:627..842+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199183.5595.1 ID=mRNA_H-elongata_contig199183.5595.1|Name=mRNA_H-elongata_contig199183.5595.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig199183:627..842+ (Himanthalia elongata Himel1 dioecious)
GCTTTATGTCAACAAATTCTCGACGACTGGACAGCAAAGTTCTCCCCCTT
GGGTGTCCGCCTAGCGGAGCTGACGAGCGACTCTATGACTCCAACGGGAT
CGCTTCGGGATCTGGCGTCAGCGGACATAATACTCACGACCCCCGAGAAG
TGGGACAGCGTCACGAGACGGTGGAAGGAACACGCCTTCTTGGTGAGAGA
GAGAGCCTTATTCTTG
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Coding sequence (CDS) from alignment at H-elongata_contig199183:627..842+

>mRNA_H-elongata_contig199183.5595.1 ID=mRNA_H-elongata_contig199183.5595.1|Name=mRNA_H-elongata_contig199183.5595.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig199183:627..842+ (Himanthalia elongata Himel1 dioecious)
GCTTTATGTCAACAAATTCTCGACGACTGGACAGCAAAGTTCTCCCCCTT
GGGTGTCCGCCTAGCGGAGCTGACGAGCGACTCTATGACTCCAACGGGAT
CGCTTCGGGATCTGGCGTCAGCGGACATAATACTCACGACCCCCGAGAAG
TGGGACAGCGTCACGAGACGGTGGAAGGAACACGCCTTCTTGGTGAGAGA
GAGAGCCTTATTCTTGGCTTTATGTCAACAAATTCTCGACGACTGGACAG
CAAAGTTCTCCCCCTTGGGTGTCCGCCTAGCGGAGCTGACGAGCGACTCT
ATGACTCCAACGGGATCGCTTCGGGATCTGGCGTCAGCGGACATAATACT
CACGACCCCCGAGAAGTGGGACAGCGTCACGAGACGGTGGAAGGAACACG
CCTTCTTGGTGAGAGAGAGAGCCTTATTCTTG
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