mRNA_H-elongata_contig199160.5594.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199160.5594.1
Unique NamemRNA_H-elongata_contig199160.5594.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig199160.5594.1 vs. uniprot
Match: D8LS60_ECTSI (Pantoate--beta-alanine ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS60_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.430e-20
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 ESSVGFVPTMGALHQGHTDLFRRARAECDVVIGSVFVNPAQFAPHE 138
            ++SVGFVPTMGALH+GH DLFRRAR ECD+V+GSVFVNPAQFAPHE
Sbjct:   80 DASVGFVPTMGALHEGHLDLFRRARRECDIVVGSVFVNPAQFAPHE 125
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BLAST of mRNA_H-elongata_contig199160.5594.1 vs. uniprot
Match: S0EZU1_CHTCT (Pantothenate synthetase n=2 Tax=Chthonomonas TaxID=1077265 RepID=S0EZU1_CHTCT)

HSP 1 Score: 79.0 bits (193), Expect = 2.360e-16
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 ESSVGFVPTMGALHQGHTDLFRRARAECDVVIGSVFVNPAQFAPHE 138
            E SVGFVPTMGALH+GH  LFRRA+A+CD+ + S+FVNP QF P+E
Sbjct:   21 EKSVGFVPTMGALHEGHLSLFRRAKADCDIAVASIFVNPTQFGPNE 66
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BLAST of mRNA_H-elongata_contig199160.5594.1 vs. uniprot
Match: A0A2M7B2F3_9BACT (Pantothenate synthetase n=1 Tax=Elusimicrobia bacterium CG06_land_8_20_14_3_00_38_11 TaxID=2014307 RepID=A0A2M7B2F3_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 2.770e-15
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    7 SVGFVPTMGALHQGHTDLFRRARAECDVVIGSVFVNPAQFAPHE 138
            S+GFVPTMGALHQGH  L RRAR E D+V  S+FVNPAQFAPHE
Sbjct:   23 SIGFVPTMGALHQGHISLIRRARKENDIVAVSIFVNPAQFAPHE 66
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BLAST of mRNA_H-elongata_contig199160.5594.1 vs. uniprot
Match: A0A3C0VG15_9BACT (Pantothenate synthetase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3C0VG15_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 7.730e-15
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   10 VGFVPTMGALHQGHTDLFRRARAECDVVIGSVFVNPAQFAPHE 138
            +GFVPTMGALH+GH  L R ARAECD VI S+FVNP QF PHE
Sbjct:   24 IGFVPTMGALHEGHVSLVRAARAECDRVIASIFVNPLQFGPHE 66
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BLAST of mRNA_H-elongata_contig199160.5594.1 vs. uniprot
Match: A0A2W4K4K7_9BACT (Pantothenate synthetase n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A2W4K4K7_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 8.050e-15
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   10 VGFVPTMGALHQGHTDLFRRARAECDVVIGSVFVNPAQFAPHE 138
            VGFVPTMGALH+GH  L R AR ECD VI S+FVNP QFAPHE
Sbjct:   29 VGFVPTMGALHEGHLSLMRAARKECDRVIASIFVNPLQFAPHE 71
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BLAST of mRNA_H-elongata_contig199160.5594.1 vs. uniprot
Match: A0A0L0HE29_SPIPD (Pantoate--beta-alanine ligase n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HE29_SPIPD)

HSP 1 Score: 75.5 bits (184), Expect = 9.350e-15
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    7 SVGFVPTMGALHQGHTDLFRRARAECDVVIGSVFVNPAQFAPHE 138
            SVGFVPTMGALH GH  L R AR  CD+V+ S+FVNPAQFAPHE
Sbjct:  383 SVGFVPTMGALHDGHVSLARTARKTCDIVVVSIFVNPAQFAPHE 426
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BLAST of mRNA_H-elongata_contig199160.5594.1 vs. uniprot
Match: A0A537ZPM4_9ACTN (Pantothenate synthetase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZPM4_9ACTN)

HSP 1 Score: 73.9 bits (180), Expect = 1.230e-14
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 ESSVGFVPTMGALHQGHTDLFRRARAECDVVIGSVFVNPAQFAPHE 138
            ++ +G VPTMGA H GH  LFR ARAECD V+ S+FVNPAQFAPHE
Sbjct:   21 KARLGLVPTMGAFHDGHVSLFRAARAECDKVVVSLFVNPAQFAPHE 66
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BLAST of mRNA_H-elongata_contig199160.5594.1 vs. uniprot
Match: A0A349B8V2_9ACTN (Pantoate--beta-alanine ligase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B8V2_9ACTN)

HSP 1 Score: 69.7 bits (169), Expect = 1.420e-14
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   10 VGFVPTMGALHQGHTDLFRRARAECDVVIGSVFVNPAQFAPHE 138
            VGFVPTMG LH+GH  L R ARAE DVV+ S+FVNP QFA HE
Sbjct:   24 VGFVPTMGYLHEGHVSLMRAARAEADVVVTSIFVNPLQFAAHE 66
[Close]
BLAST of mRNA_H-elongata_contig199160.5594.1 vs. uniprot
Match: A0A2E0XAJ9_9PLAN (Pantothenate synthetase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E0XAJ9_9PLAN)

HSP 1 Score: 73.9 bits (180), Expect = 1.420e-14
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    7 SVGFVPTMGALHQGHTDLFRRARAECDVVIGSVFVNPAQFAPHE 138
            +VGFVPTMGALH GH  L   ARAECDVV  S+FVNP QFAPHE
Sbjct:   23 TVGFVPTMGALHAGHLSLVDAARAECDVVAASIFVNPTQFAPHE 66
[Close]
BLAST of mRNA_H-elongata_contig199160.5594.1 vs. uniprot
Match: A0A7V8YA74_9ACTN (Pantothenate synthetase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V8YA74_9ACTN)

HSP 1 Score: 73.9 bits (180), Expect = 1.540e-14
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    4 SSVGFVPTMGALHQGHTDLFRRARAECDVVIGSVFVNPAQFAPHE 138
            SS+G VPT+GALH+GH  L RRARA CDVV  S+FVNP QF PHE
Sbjct:   22 SSIGLVPTLGALHEGHVSLMRRARAVCDVVAVSIFVNPLQFGPHE 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199160.5594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS60_ECTSI1.430e-2084.78Pantoate--beta-alanine ligase n=2 Tax=Ectocarpus T... [more]
S0EZU1_CHTCT2.360e-1669.57Pantothenate synthetase n=2 Tax=Chthonomonas TaxID... [more]
A0A2M7B2F3_9BACT2.770e-1577.27Pantothenate synthetase n=1 Tax=Elusimicrobia bact... [more]
A0A3C0VG15_9BACT7.730e-1574.42Pantothenate synthetase n=1 Tax=Planctomycetes bac... [more]
A0A2W4K4K7_9BACT8.050e-1576.74Pantothenate synthetase n=1 Tax=Candidatus Melaina... [more]
A0A0L0HE29_SPIPD9.350e-1575.00Pantoate--beta-alanine ligase n=1 Tax=Spizellomyce... [more]
A0A537ZPM4_9ACTN1.230e-1469.57Pantothenate synthetase n=1 Tax=Actinomycetia bact... [more]
A0A349B8V2_9ACTN1.420e-1472.09Pantoate--beta-alanine ligase (Fragment) n=1 Tax=A... [more]
A0A2E0XAJ9_9PLAN1.420e-1475.00Pantothenate synthetase n=1 Tax=Planctomycetaceae ... [more]
A0A7V8YA74_9ACTN1.540e-1471.11Pantothenate synthetase n=1 Tax=Actinomycetia bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199160contigH-elongata_contig199160:297..434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue7.7e-12
Seed eggNOG ortholog2880.D8LS60
KEGG rclassRC00022,RC00096,RC00141,RC00200
KEGG koko:K00606,ko:K01918
KEGG ReactionR01226,R02473
KEGG Pathwayko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110
KEGG ModuleM00119
GOsGO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605
EggNOG free text desc.pantoate-beta-alanine ligase activity
EggNOG OGsCOG0414@1,KOG3042@2759
EC2.1.2.11,6.3.2.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionPantoate--beta-alanine ligase
Ec32 orthologEc-12_004720.1
Exons1
Model size138
Cds size111
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930124.2233372-CDS-H-elongata_contig199160:296..4071622930124.2233372-CDS-H-elongata_contig199160:296..407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199160 297..407 -
1691679290.2820778-CDS-H-elongata_contig199160:296..4071691679290.2820778-CDS-H-elongata_contig199160:296..407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199160 297..407 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930124.241852-UTR-H-elongata_contig199160:407..4341622930124.241852-UTR-H-elongata_contig199160:407..434Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig199160 408..434 -
1691679290.2921996-UTR-H-elongata_contig199160:407..4341691679290.2921996-UTR-H-elongata_contig199160:407..434Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig199160 408..434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199160.5594.1prot_H-elongata_contig199160.5594.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199160 297..407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199160.5594.1

>prot_H-elongata_contig199160.5594.1 ID=prot_H-elongata_contig199160.5594.1|Name=mRNA_H-elongata_contig199160.5594.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
MGALHQGHTDLFRRARAECDVVIGSVFVNPAQFAPHE
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mRNA from alignment at H-elongata_contig199160:297..434-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199160.5594.1 ID=mRNA_H-elongata_contig199160.5594.1|Name=mRNA_H-elongata_contig199160.5594.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig199160:297..434- (Himanthalia elongata Himel1 dioecious)
GAATCCTCGGTTGGCTTCGTGCCGACAATGGGTGCCCTCCATCAGGGCCA
CACGGACCTATTCCGAAGAGCGCGGGCTGAGTGTGACGTGGTCATCGGGT
CCGTGTTCGTGAACCCAGCACAGTTTGCCCCGCACGAG
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Coding sequence (CDS) from alignment at H-elongata_contig199160:297..434-

>mRNA_H-elongata_contig199160.5594.1 ID=mRNA_H-elongata_contig199160.5594.1|Name=mRNA_H-elongata_contig199160.5594.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig199160:297..434- (Himanthalia elongata Himel1 dioecious)
ATGGGTGCCCTCCATCAGGGCCACACGGACCTATTCCGAAGAGCGCGGGC
TGAGTGTGACGTGGTCATCGGGTCCGTGTTCGTGAACCCAGCACAGTTTG
CCCCGCACGAGATGGGTGCCCTCCATCAGGGCCACACGGACCTATTCCGA
AGAGCGCGGGCTGAGTGTGACGTGGTCATCGGGTCCGTGTTCGTGAACCC
AGCACAGTTTGCCCCGCACGAG
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