mRNA_H-elongata_contig199113.5591.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199113.5591.1
Unique NamemRNA_H-elongata_contig199113.5591.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig199113.5591.1 vs. uniprot
Match: D7FQH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQH8_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 2.880e-40
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 1 
Query:    4 VDMRMFQRPEDRMTAVAAAERLRAKAVTDHRRHSAATSRCHLCMESAGFKKHLILSLGEHTFLYLATGTRRLSEGHCYIVPIRHTPAST 270
            VDMRMFQRPEDRMTAVAAAER +AKAV +HRR SA TSRC LCM+S+ FKK L+LSLGEHT+LYLATGT RLSEGHCYIVPIRHTPAST
Sbjct:  811 VDMRMFQRPEDRMTAVAAAERQKAKAVAEHRRQSAVTSRCPLCMDSSSFKKRLVLSLGEHTYLYLATGTHRLSEGHCYIVPIRHTPAST 899
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BLAST of mRNA_H-elongata_contig199113.5591.1 vs. uniprot
Match: A0A6H5L7J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J6_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 3.450e-38
Identity = 73/89 (82.02%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:    4 VDMRMFQRPEDRMTAVAAAERLRAKAVTDHRRHSAATSRCHLCMESAGFKKHLILSLGEHTFLYLATGTRRLSEGHCYIVPIRHTPAST 270
            VDMRMFQRPEDRMTAVAAAER +AK V  HRR SA TSRC LCM+S+ FKK L+LSLGEHT+LYLATGT RLS GHCYIVPIRHTPAST
Sbjct:  419 VDMRMFQRPEDRMTAVAAAERQKAKIVAAHRRQSAVTSRCPLCMDSSSFKKRLVLSLGEHTYLYLATGTHRLSGGHCYIVPIRHTPAST 507
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BLAST of mRNA_H-elongata_contig199113.5591.1 vs. uniprot
Match: A0A836CIX0_9STRA (CwfJ C-terminus 1-domain-containing protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX0_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.930e-16
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    4 VDMRMFQRPEDRMTAVAAAERLRAKAVTDHRRHSAATSRCHLCMESAGFKKHLILSLGEHTFLYLATGTRRLSEGHCYIVPIRHTPAST 270
            VDM+MFQ  +DR+T VAAAER +  A+T H+  +AA S+C LC  S  F   L+++ G+H +L L  G+  LS+ HC IVP++HT A+T
Sbjct:   80 VDMKMFQSRDDRLTDVAAAERAQQAAITQHKAQTAALSQCKLCPGSKAFASRLMVANGQHVYLQLVVGSG-LSQQHCLIVPMKHTQAAT 167
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BLAST of mRNA_H-elongata_contig199113.5591.1 vs. uniprot
Match: A0A329RX41_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RX41_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.410e-15
Identity = 52/107 (48.60%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:    1 QVDMRMFQRPEDRMTAVAAAERLRAKAVTDHRRHSAATSRCHLCMESAGFKKHLILSLGEHTFLYLATGTR-RLSEGHCYIVPIRHTPASTVGRKGNVLARSLTRYQ 318
            QVDM+M Q P   +T  A A+R  A AV + +R    T +C LCM+S  FKKHL+LSLGE  F YLA   R RL  GHC IVPI HT  S V  +  V +  ++R+Q
Sbjct:  624 QVDMKMLQEPGSNLTRRAKAQREHALAVNESKRWDQRTQKCQLCMKSPAFKKHLMLSLGE--FTYLAVPNRPRLHPGHCVIVPIEHT-CSAVQAEEQV-SEEISRFQ 726
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BLAST of mRNA_H-elongata_contig199113.5591.1 vs. uniprot
Match: A0A2P4XRI1_9STRA (CwfJ_C_1 domain-containing protein (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRI1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.510e-15
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:    1 QVDMRMFQRPEDRMTAVAAAERLRAKAVTDHRRHSAATSRCHLCMESAGFKKHLILSLGEHTFLYLATGTR-RLSEGHCYIVPIRHTPASTVGRKGNVLARSLTRYQ 318
            QVDM+M Q P   +T  A A+R    AV + ++    T +C LCM+S  FKKHL+LSLGE  F YLA   R RL  GHC IVPI HT  S+  +    ++  +TR+Q
Sbjct:  376 QVDMKMLQEPGSNLTRRAQAQREHTVAVNETKKWDERTQKCQLCMKSPAFKKHLMLSLGE--FTYLAIPNRPRLHPGHCVIVPIEHT--SSAVQADEQVSEEITRFQ 478
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BLAST of mRNA_H-elongata_contig199113.5591.1 vs. uniprot
Match: A0A8K1FJM4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJM4_PYTOL)

HSP 1 Score: 79.3 bits (194), Expect = 4.890e-15
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 QVDMRMFQRPEDRMTAVAAAERLRAKAVTDHRRHSAATSRCHLCMESAGFKKHLILSLGEHTFLYLATGTRRLSEGHCYIVPIRHTPAST 270
            QVDM+M +RP+  +T  AAAER R ++V  +++    T +C  CM S  FKKHL+LSLGE+T+L +    R L   HC+IVP+ HT + T
Sbjct:  637 QVDMKMLERPDAHLTKRAAAERDRQRSVNQNKKWEDKTQKCMACMHSPAFKKHLMLSLGEYTYLAMPNKPR-LHPAHCFIVPVDHTGSFT 725
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BLAST of mRNA_H-elongata_contig199113.5591.1 vs. uniprot
Match: W2QB13_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2QB13_PHYPN)

HSP 1 Score: 78.6 bits (192), Expect = 9.080e-15
Identity = 51/107 (47.66%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:    1 QVDMRMFQRPEDRMTAVAAAERLRAKAVTDHRRHSAATSRCHLCMESAGFKKHLILSLGEHTFLYLATGTR-RLSEGHCYIVPIRHTPASTVGRKGNVLARSLTRYQ 318
            QVD +M Q P   +T  A A+R  + AV + +R    T +C LCM+S  FKKHL+LSLGE  F YLA   R RL  GHC IVPI HT  STV     V +  ++R+Q
Sbjct:  604 QVDTKMLQEPGSNLTRRAQAQRDHSVAVNESKRWDERTQKCQLCMKSVAFKKHLMLSLGE--FTYLAVPNRPRLHPGHCVIVPIEHT-CSTVQADEQV-SEEISRFQ 706
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BLAST of mRNA_H-elongata_contig199113.5591.1 vs. uniprot
Match: D0MQM0_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MQM0_PHYIT)

HSP 1 Score: 77.4 bits (189), Expect = 2.270e-14
Identity = 45/87 (51.72%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 QVDMRMFQRPEDRMTAVAAAERLRAKAVTDHRRHSAATSRCHLCMESAGFKKHLILSLGEHTFLYLATGTR-RLSEGHCYIVPIRHT 258
            QVD +M Q P   +T  A ++R  A A+ D +R    T +C LCM+SA FKKHL+LSLGE  F YLA   R RL  GHC IVPI H+
Sbjct:  402 QVDTKMLQEPGSNLTRRAQSQRGHAIAINDSKRWDERTQKCQLCMKSAAFKKHLMLSLGE--FTYLAMPNRPRLHPGHCVIVPIEHS 486
[Close]
BLAST of mRNA_H-elongata_contig199113.5591.1 vs. uniprot
Match: G4ZKJ0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZKJ0_PHYSP)

HSP 1 Score: 77.4 bits (189), Expect = 2.270e-14
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:    1 QVDMRMFQRPEDRMTAVAAAERLRAKAVTDHRRHSAATSRCHLCMESAGFKKHLILSLGEHTFLYLATGTR-RLSEGHCYIVPIRHTPASTVGRKGNVLARSLTRYQ 318
            QVDM+M Q P   +T  A A+R  A AV + ++    T +C LCM+S  FKKHL+LSLGE  F YLA  +R RL  GHC IVP  HT ++   +     +  +TR+Q
Sbjct:  409 QVDMKMLQEPGSNLTRRAQAQREHALAVNETKKWDQRTQKCQLCMKSPAFKKHLMLSLGE--FTYLAVPSRPRLHPGHCVIVPSDHTCSAV--QADEQTSEEITRFQ 511
[Close]
BLAST of mRNA_H-elongata_contig199113.5591.1 vs. uniprot
Match: A0A833W863_PHYIN (Protein similar to CwfJ C-terminus 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833W863_PHYIN)

HSP 1 Score: 77.4 bits (189), Expect = 2.310e-14
Identity = 45/87 (51.72%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 QVDMRMFQRPEDRMTAVAAAERLRAKAVTDHRRHSAATSRCHLCMESAGFKKHLILSLGEHTFLYLATGTR-RLSEGHCYIVPIRHT 258
            QVD +M Q P   +T  A ++R  A A+ D +R    T +C LCM+SA FKKHL+LSLGE  F YLA   R RL  GHC IVPI H+
Sbjct:  612 QVDTKMLQEPGSNLTRRAQSQRGHAIAINDSKRWDERTQKCQLCMKSAAFKKHLMLSLGE--FTYLAMPNRPRLHPGHCVIVPIEHS 696
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199113.5591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQH8_ECTSI2.880e-4084.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7J6_9PHAE3.450e-3882.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CIX0_9STRA1.930e-1648.31CwfJ C-terminus 1-domain-containing protein-like p... [more]
A0A329RX41_9STRA1.410e-1548.60Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A2P4XRI1_9STRA2.510e-1545.79CwfJ_C_1 domain-containing protein (Fragment) n=2 ... [more]
A0A8K1FJM4_PYTOL4.890e-1546.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2QB13_PHYPN9.080e-1547.66Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
D0MQM0_PHYIT2.270e-1451.72Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
G4ZKJ0_PHYSP2.270e-1444.86Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A833W863_PHYIN2.310e-1451.72Protein similar to CwfJ C-terminus 2 n=1 Tax=Phyto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199113contigH-elongata_contig199113:383..1110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.4
Seed ortholog evalue8.9e-34
Seed eggNOG ortholog2880.D7FQH8
Preferred nameCWF19L2
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0071014,GO:0071704,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.Protein similar to CwfJ C-terminus 2
EggNOG OGsKOG2477@1,KOG2477@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199113.5591.1prot_H-elongata_contig199113.5591.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199113 383..1101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930123.855619-CDS-H-elongata_contig199113:382..5811622930123.855619-CDS-H-elongata_contig199113:382..581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199113 383..581 -
1691679290.0880382-CDS-H-elongata_contig199113:382..5811691679290.0880382-CDS-H-elongata_contig199113:382..581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199113 383..581 -
1622930123.8771484-CDS-H-elongata_contig199113:991..11011622930123.8771484-CDS-H-elongata_contig199113:991..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199113 992..1101 -
1691679290.0980203-CDS-H-elongata_contig199113:991..11011691679290.0980203-CDS-H-elongata_contig199113:991..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199113 992..1101 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930123.8947668-UTR-H-elongata_contig199113:1101..11101622930123.8947668-UTR-H-elongata_contig199113:1101..1110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig199113 1102..1110 -
1691679290.1062672-UTR-H-elongata_contig199113:1101..11101691679290.1062672-UTR-H-elongata_contig199113:1101..1110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig199113 1102..1110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199113.5591.1

>prot_H-elongata_contig199113.5591.1 ID=prot_H-elongata_contig199113.5591.1|Name=mRNA_H-elongata_contig199113.5591.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MRMFQRPEDRMTAVAAAERLRAKAVTDHRRHSAATSRCHLCMESAGFKKH
LILSLGEHTFLYLATGTRRLSEGHCYIVPIRHTPASTVGRKGNVLARSLT
RYQ
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mRNA from alignment at H-elongata_contig199113:383..1110-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199113.5591.1 ID=mRNA_H-elongata_contig199113.5591.1|Name=mRNA_H-elongata_contig199113.5591.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=728bp|location=Sequence derived from alignment at H-elongata_contig199113:383..1110- (Himanthalia elongata Himel1 dioecious)
CAGGTAGACATGCGGATGTTCCAGAGACCGGAAGATCGGATGACGGCCGT
AGCAGCTGCGGAGCGACTGCGTGCGAAGGCCGTCACCGATCACCGCCGAC
ACTCCGCTGCCACATCTAGGTTCGTCCTCTTAATTATTACCGTAGGTTTT
AGATCTCCGATAGATCTCCGATTTAGATCTCCGATCCTGAATTGAGGATC
ACATACATGAAACTGGAGAGGTTTTGACCCGCTTGTCTTTTTTTCTTCTT
CTTTTTTCTTTTTTTCCCGACCACTTGTAGAAGCCGGGCAGGGCCTTAAT
GGGCACGTAGATGGCGGTTGGCCTCCGCCAGCTTACCAATTGCGCTGCGT
TCGAGTTATTTTGAAAGCGTTGGAGGCGTTCATCTGCGGGGGCACGGGCT
GCTACACGTGTCGAGTTTTGTACGGAGCAGCGGTCGCTGTGAAAGGCTAA
GTGTTCGATCCCACGCCCCGTAGGCATGAAACGCCGTTAGCGGTTTGCCC
TCTCTCTGTCCTTTTGCTTTTTTTTTTAGGTGCCACTTATGCATGGAATC
TGCGGGGTTCAAAAAGCACCTCATCCTGTCTCTTGGGGAGCACACATTTC
TCTACCTCGCCACCGGAACCCGCAGACTGTCGGAGGGCCACTGCTACATC
GTGCCCATTCGCCACACGCCGGCGTCGACGGTAGGACGGAAGGGAAACGT
ACTCGCTCGCTCGCTCACTCGTTACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig199113:383..1110-

>mRNA_H-elongata_contig199113.5591.1 ID=mRNA_H-elongata_contig199113.5591.1|Name=mRNA_H-elongata_contig199113.5591.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig199113:383..1110- (Himanthalia elongata Himel1 dioecious)
ATGCGGATGTTCCAGAGACCGGAAGATCGGATGACGGCCGTAGCAGCTGC
GGAGCGACTGCGTGCGAAGGCCGTCACCGATCACCGCCGACACTCCGCTG
CCACATCTAGATGCGGATGTTCCAGAGACCGGAAGATCGGATGACGGCCG
TAGCAGCTGCGGAGCGACTGCGTGCGAAGGCCGTCACCGATCACCGCCGA
CACTCCGCTGCCACATCTAGGTGCCACTTATGCATGGAATCTGCGGGGTT
CAAAAAGCACCTCATCCTGTCTCTTGGGGAGCACACATTTCTCTACCTCG
CCACCGGAACCCGCAGACTGTCGGAGGGCCACTGCTACATCGTGCCCATT
CGCCACACGCCGGCGTCGACGGTAGGACGGAAGGGAAACGTACTCGCTCG
CTCGCTCACTCGTTACCAGGTGCCACTTATGCATGGAATCTGCGGGGTTC
AAAAAGCACCTCATCCTGTCTCTTGGGGAGCACACATTTCTCTACCTCGC
CACCGGAACCCGCAGACTGTCGGAGGGCCACTGCTACATCGTGCCCATTC
GCCACACGCCGGCGTCGACGGTAGGACGGAAGGGAAACGTACTCGCTCGC
TCGCTCACTCGTTACCAG
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