mRNA_H-elongata_contig19907.5589.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19907.5589.1
Unique NamemRNA_H-elongata_contig19907.5589.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19907.5589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19907contigH-elongata_contig19907:4709..6479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930123.6829414-CDS-H-elongata_contig19907:4710..49871622930123.6829414-CDS-H-elongata_contig19907:4710..4987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19907 4711..4987 -
1691679290.0064352-CDS-H-elongata_contig19907:4710..49871691679290.0064352-CDS-H-elongata_contig19907:4710..4987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19907 4711..4987 -
1622930123.6938603-CDS-H-elongata_contig19907:6354..64791622930123.6938603-CDS-H-elongata_contig19907:6354..6479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19907 6355..6479 -
1691679290.0211084-CDS-H-elongata_contig19907:6354..64791691679290.0211084-CDS-H-elongata_contig19907:6354..6479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19907 6355..6479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19907.5589.1prot_H-elongata_contig19907.5589.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19907 4711..6479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19907.5589.1

>prot_H-elongata_contig19907.5589.1 ID=prot_H-elongata_contig19907.5589.1|Name=mRNA_H-elongata_contig19907.5589.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
RSHSLDDNRPTPPRGRRPYSNASFLLRFREVQENGRISSGKGRQTMDAAD
LFGGAPDRTDVIPSFGTVEEPPRSAASLFGGEIEGNPLPGSLQSKVVPIQ
DMPDDLFGDSGGDRGRGGGSVEVLASDFGAPPDT
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mRNA from alignment at H-elongata_contig19907:4709..6479-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19907.5589.1 ID=mRNA_H-elongata_contig19907.5589.1|Name=mRNA_H-elongata_contig19907.5589.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1771bp|location=Sequence derived from alignment at H-elongata_contig19907:4709..6479- (Himanthalia elongata Himel1 dioecious)
CGATCGCATTCGCTAGATGACAACAGGCCTACGCCCCCGCGGGGACGCAG
ACCTTATTCGAACGCATCATTTCTTTTGCGATTCCGGGAGGTTCAAGAGA
ACGGGAGGATCTCCTCTGGAAAAGGGTGAGCAGTAATTTTGATTTAGAAG
CAAAGCACCAGTACTACGTTGAGATGCTGTAAGTACGTGATCCCTCAAGC
TTACCGGGTATTGTCGACATCTGTAGGCAGCCCCATGAGGTCGAGGGAAA
CGCGCAGCTACTACGTAAATGTATCGAAAGCTTTGTCAATATTTCTAGAA
TGTAACGCTAGCTTGATTGGTTGTACGGGTGTGACGTTCAGATCGCTTCA
GACGGCAAACAGCGAGGTAAGGTCATTGGGGGCTTGCACACATGCATGCC
AGCTCTCTGTTCATTGTACCTGGTACTCTTTTAATACCTAGCCCCCTTTA
TTATACAGTAGTAAACGATTACAGTACTGTATAGCTTCGACTCCCCGATA
GGGTGGTTCCAAATAAGAATTGCGCTCATTGAAACCGGGATGGAAGCGGT
ATCGTCCTACTAAATAGTTGGCAGCGACGAGTTCCCTTCCGCGAAGTGTT
CCACCTGCAGTCTACTCCATCCATGCAGTGTGAACGTTGTTGCTCCATGA
CGTTTCTAACATTATAGAGTGTAACTTTGCCTACCTTCACTCTCGAGGCG
GAACAGATGCCGCTGTCGAACCGGAGTTTTTTAGGGCTATCTTCCATACC
GGTAGTTGTGGACTGGTGTGGATGTGTGTTCAGAGGGTTCGAACAAGTTT
GGAATTTTCGAGAAAATGATAACAAAACTTATCAGGATGTAATATCGTGA
CGGCTAGCAATACGAGCGTAAGTCTAGTTCGAATTTCAAACGCAAACCCG
CGCGACGCTTGGCCACAGCGCAGCGCAACCCTTCAATTTCACCGCTCTTG
TTTGTTCTACAGCCGGTGACTCGCTTCACTTTCTCTTTTCGGCAACCTCT
CGGAGCAGTATTATCACTCCTCGCTTAAAATACGAAACGAAGTCTGACTC
ACAGCCATCAGAGGTACTCACCGTGCCGTGTACCTTTTATCTAGAAGTCT
TTATATGGAGGGGGGAAAAGGGCCGCCCTGCTGCGATGCACCACCTCTTT
TGGCTGTAGCGCGTTGATCGCGGCGGGATCCGCGGGAATATACTCGGCTG
ATACGATCACCCAAAATCAGCGCCATAGGAGGAGCTGCAGCAGTCAGCAG
ACGGCAATCATGGGTTCACATTTTTTTTTTTCATCGGAGTCTAGCCGTCA
ATTGTGCTGTGGTGAACGCGCATCCTCCACCTTATGGTGGCCGCGTCGTT
TGTGTGCGTCCAATCGATTATCGAATCGATTAAGATCCCCCGAAAATATA
TAAACAGCGTTGAAAAGCGACGTATTTCTGATCAGAGCGCTATTTTCGTT
TTATTTGCTCATAACCCAACCACCCCCCTACGCGCCCTTCAGCAGACAAA
CCATGGACGCAGCTGATCTCTTTGGAGGGGCACCCGATCGGACAGACGTG
ATCCCGTCTTTCGGCACGGTGGAGGAACCCCCCAGATCTGCAGCTTCCCT
TTTTGGCGGAGAAATCGAGGGGAACCCCTTGCCGGGTTCACTTCAAAGTA
AGGTAGTACCAATCCAGGACATGCCGGACGATCTATTTGGTGACAGCGGG
GGCGACCGCGGCAGAGGCGGCGGCAGTGTCGAAGTCCTCGCTAGTGACTT
TGGTGCTCCGCCGGATACGTC
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Coding sequence (CDS) from alignment at H-elongata_contig19907:4709..6479-

>mRNA_H-elongata_contig19907.5589.1 ID=mRNA_H-elongata_contig19907.5589.1|Name=mRNA_H-elongata_contig19907.5589.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig19907:4709..6479- (Himanthalia elongata Himel1 dioecious)
CGATCGCATTCGCTAGATGACAACAGGCCTACGCCCCCGCGGGGACGCAG
ACCTTATTCGAACGCATCATTTCTTTTGCGATTCCGGGAGGTTCAAGAGA
ACGGGAGGATCTCCTCTGGAAAAGGCGATCGCATTCGCTAGATGACAACA
GGCCTACGCCCCCGCGGGGACGCAGACCTTATTCGAACGCATCATTTCTT
TTGCGATTCCGGGAGGTTCAAGAGAACGGGAGGATCTCCTCTGGAAAAGG
CAGACAAACCATGGACGCAGCTGATCTCTTTGGAGGGGCACCCGATCGGA
CAGACGTGATCCCGTCTTTCGGCACGGTGGAGGAACCCCCCAGATCTGCA
GCTTCCCTTTTTGGCGGAGAAATCGAGGGGAACCCCTTGCCGGGTTCACT
TCAAAGTAAGGTAGTACCAATCCAGGACATGCCGGACGATCTATTTGGTG
ACAGCGGGGGCGACCGCGGCAGAGGCGGCGGCAGTGTCGAAGTCCTCGCT
AGTGACTTTGGTGCTCCGCCGGATACGCAGACAAACCATGGACGCAGCTG
ATCTCTTTGGAGGGGCACCCGATCGGACAGACGTGATCCCGTCTTTCGGC
ACGGTGGAGGAACCCCCCAGATCTGCAGCTTCCCTTTTTGGCGGAGAAAT
CGAGGGGAACCCCTTGCCGGGTTCACTTCAAAGTAAGGTAGTACCAATCC
AGGACATGCCGGACGATCTATTTGGTGACAGCGGGGGCGACCGCGGCAGA
GGCGGCGGCAGTGTCGAAGTCCTCGCTAGTGACTTTGGTGCTCCGCCGGA
TACG
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