mRNA_H-elongata_contig199043.5588.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: D7FSH0_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSH0_ECTSI) HSP 1 Score: 212 bits (540), Expect = 8.400e-62 Identity = 107/142 (75.35%), Postives = 124/142 (87.32%), Query Frame = 1
Query: 1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTAPV 426
VAEFSSSLGQRQRS IIRRARAG + VIVCSDGMARGMDL+GVGLVVNYDVP+QAKTY+HRVGRTARAG+RG AVTI KKGQVK+F MR+G+D ++VR + SP D+S L L+GRY+ CL+ L EV+EAER GELDP+APV
Sbjct: 691 VAEFSSSLGQRQRSSIIRRARAGAVRVIVCSDGMARGMDLDGVGLVVNYDVPSQAKTYVHRVGRTARAGSRGTAVTITKKGQVKQFLNMRSGIDKKRVRLDSSPADQSRLLPLAGRYQLCLKDLKEVMEAERTGELDPSAPV 832
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: A0A0W8D286_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D286_PHYNI) HSP 1 Score: 134 bits (338), Expect = 6.720e-35 Identity = 70/140 (50.00%), Postives = 92/140 (65.71%), Query Frame = 1
Query: 1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTA 420
+ EFSSSL Q+QRS ++ +AG + +VCSD MARGMD+E V VVNYDVP+ KTYIHRVGRTARAG G+ VT+ K GQ+K RM D K++P P + ++ L RY L+ L + LEAE+ G+L T+
Sbjct: 246 IREFSSSLSQKQRSALVADCKAGRVETVVCSDAMARGMDIEDVANVVNYDVPSFIKTYIHRVGRTARAGRHGRCVTLVKMGQMKGMMRMLKKADNNKLKPYPL--QQEHMKTLVPRYTDALQQLKDTLEAEKAGKLQATS 383
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: M4B1B7_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B1B7_HYAAE) HSP 1 Score: 136 bits (342), Expect = 8.180e-35 Identity = 70/140 (50.00%), Postives = 93/140 (66.43%), Query Frame = 1
Query: 1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTA 420
+ EFSSSL Q+QRS ++ +AG + +VCSD MARGMD+E + V+NYDVP+ KTYIHRVGRTARAG G+ VT+ K GQ+K RM D K++P P D +++L RY L+ L E L+AE+ GEL T+
Sbjct: 377 IREFSSSLSQKQRSTLVADCKAGRVDTVVCSDAMARGMDIEDIANVINYDVPSFVKTYIHRVGRTARAGRHGRCVTLVKMGQMKGMMRMLKKADTNKLKPYPLQQDH--VKSLVPRYTEALQRLKETLDAEKAGELQVTS 514
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: A0A6A3MZZ4_9STRA (ATP-dependent RNA helicase n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MZZ4_9STRA) HSP 1 Score: 134 bits (338), Expect = 2.810e-34 Identity = 69/140 (49.29%), Postives = 93/140 (66.43%), Query Frame = 1
Query: 1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTA 420
+ EFSSSL Q+QRS ++ +AG + +VCSD MARGMD++ V VVNYDVP+ KTYIHRVGRTARAG G++VT+ K GQ+K RM D K++P P + ++ L RY L+ L + LEAE+ G+L T+
Sbjct: 373 IREFSSSLSQKQRSGLVADCKAGRVETVVCSDAMARGMDIDDVANVVNYDVPSFIKTYIHRVGRTARAGGHGRSVTLVKMGQMKGMMRMLKKADNNKLKPYPL--QQEHMKTLVPRYTEALQRLKDTLEAEKAGKLQATS 510
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: A0A662WGQ4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WGQ4_9STRA) HSP 1 Score: 134 bits (336), Expect = 5.810e-34 Identity = 70/140 (50.00%), Postives = 94/140 (67.14%), Query Frame = 1
Query: 1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTA 420
V EFSSSL Q+QRS ++ +AG + +VCSD MARGMD++ V VVNYDVP+ KTYIHRVGRTARAG G++VT+ K GQ+K RM + K+ +P P + ++ L RY + L+ L + LEAE+ G+L TA
Sbjct: 379 VREFSSSLSQKQRSALVVDCKAGHVETVVCSDAMARGMDIDDVANVVNYDVPSFIKTYIHRVGRTARAGRHGRSVTLVKMGQMKGMTRMLKKAENNKL--QPYPLQQEHMKTLVPRYTQALQRLKDTLEAEKSGKLTATA 516
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: A0A835YS10_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS10_9STRA) HSP 1 Score: 134 bits (337), Expect = 8.620e-34 Identity = 70/116 (60.34%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 79 VIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTAPV 426
V+VCSDGMARGMD+ GVG VVNYD PT A+TY+HRVGRTARAG G AVT+ K+GQV +F MRA V+ +V P + + L+ RYRRCLR L VLEAE+ GEL APV
Sbjct: 565 VVVCSDGMARGMDIAGVGCVVNYDAPTHARTYVHRVGRTARAGRAGLAVTLLKRGQVGQFAAMRAKVNAVEV---PGMAEAPPTDGLAARYRRCLRELAAVLEAEKRGELGAAAPV 677
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: A0A421H1G4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421H1G4_9STRA) HSP 1 Score: 132 bits (333), Expect = 1.580e-33 Identity = 69/140 (49.29%), Postives = 92/140 (65.71%), Query Frame = 1
Query: 1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTA 420
V EFSSSL Q+QRS ++ +A + +VCSD MARGMD+E + VVNYDVP+ KTYIHRVGRTARAG G++VT+ K GQ+K RM D K++P P + ++ L RY L+ L + LEAE+ G+L T+
Sbjct: 388 VREFSSSLSQKQRSALVADCKAKRVETVVCSDAMARGMDIEDIANVVNYDVPSFVKTYIHRVGRTARAGRHGRSVTLVKMGQMKGMMRMLKKADSNKLKPYPL--QQEHMKTLVPRYTEALQQLKDTLEAEKAGKLTATS 525
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: D0MZI2_PHYIT (DEAD/DEAH box RNA helicase, putative n=13 Tax=Phytophthora TaxID=4783 RepID=D0MZI2_PHYIT) HSP 1 Score: 132 bits (332), Expect = 1.980e-33 Identity = 69/140 (49.29%), Postives = 91/140 (65.00%), Query Frame = 1
Query: 1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTA 420
+ EFSSSL Q+QRS ++ +AG + +VCSD MARGMD+E V VVNYDVP+ KTYIHRVGRTARAG G+ VT+ K GQ+K RM D K++P + ++ L RY L+ L + LEAE+ G+L T+
Sbjct: 375 IREFSSSLSQKQRSSLVADCKAGRVETVVCSDAMARGMDIEDVANVVNYDVPSFIKTYIHRVGRTARAGRHGRCVTLVKLGQMKSMMRMLKKADNNKLKPYAL--QQEHMKTLVPRYTEALQQLKDTLEAEKAGKLQATS 512
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: A0A7S1Y6R5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y6R5_9STRA) HSP 1 Score: 124 bits (312), Expect = 2.150e-33 Identity = 68/140 (48.57%), Postives = 94/140 (67.14%), Query Frame = 1
Query: 1 VAEFSSSLGQRQRSRIIRRARAG-DILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPT 417
VAEFSSSL Q +RS+++ + R D+ V+VCSDGM+RGMDL V LVVNYDVP+ AKTY+HR GRTARAG G+A+++ KKGQV +F RMR+ ++ + R + + + Y+ C++ L V+ AE L PT
Sbjct: 47 VAEFSSSLSQVERSQLMTKCRQSQDVKVVVCSDGMSRGMDLPHVALVVNYDVPSFAKTYVHRCGRTARAGKVGRAISLLKKGQVVQFHRMRSLIEEPR-RVQTTSVSRELVRDSFAHYKACVKQLRVVMRAEAEENLGPT 185
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: H3GNQ4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GNQ4_PHYRM) HSP 1 Score: 131 bits (329), Expect = 5.240e-33 Identity = 67/140 (47.86%), Postives = 90/140 (64.29%), Query Frame = 1
Query: 1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTA 420
+ EFSS L Q+QRS ++ +AG + +VCSD MARGMD++ V VVNYDVP+ KTYIHRVGRTARAG G++VT+ K GQ K RM D K++P P + ++ L RY L+ L + LEAE+ G + T+
Sbjct: 371 IREFSSGLSQKQRSALVADCKAGRVETVVCSDAMARGMDIDDVANVVNYDVPSFIKTYIHRVGRTARAGRHGRSVTLVKMGQTKGMMRMLKKADSNKLKPYPL--QQEHMKTLIPRYTAALQQLKDTLEAEKAGRIQATS 508 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig199043.5588.1 >prot_H-elongata_contig199043.5588.1 ID=prot_H-elongata_contig199043.5588.1|Name=mRNA_H-elongata_contig199043.5588.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDback to top mRNA from alignment at H-elongata_contig199043:119..863+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig199043.5588.1 ID=mRNA_H-elongata_contig199043.5588.1|Name=mRNA_H-elongata_contig199043.5588.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=745bp|location=Sequence derived from alignment at H-elongata_contig199043:119..863+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig199043:119..863+ >mRNA_H-elongata_contig199043.5588.1 ID=mRNA_H-elongata_contig199043.5588.1|Name=mRNA_H-elongata_contig199043.5588.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig199043:119..863+ (Himanthalia elongata Himel1 dioecious)back to top |