mRNA_H-elongata_contig199043.5588.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199043.5588.1
Unique NamemRNA_H-elongata_contig199043.5588.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: D7FSH0_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSH0_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 8.400e-62
Identity = 107/142 (75.35%), Postives = 124/142 (87.32%), Query Frame = 1
Query:    1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTAPV 426
            VAEFSSSLGQRQRS IIRRARAG + VIVCSDGMARGMDL+GVGLVVNYDVP+QAKTY+HRVGRTARAG+RG AVTI KKGQVK+F  MR+G+D ++VR + SP D+S L  L+GRY+ CL+ L EV+EAER GELDP+APV
Sbjct:  691 VAEFSSSLGQRQRSSIIRRARAGAVRVIVCSDGMARGMDLDGVGLVVNYDVPSQAKTYVHRVGRTARAGSRGTAVTITKKGQVKQFLNMRSGIDKKRVRLDSSPADQSRLLPLAGRYQLCLKDLKEVMEAERTGELDPSAPV 832          
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: A0A0W8D286_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D286_PHYNI)

HSP 1 Score: 134 bits (338), Expect = 6.720e-35
Identity = 70/140 (50.00%), Postives = 92/140 (65.71%), Query Frame = 1
Query:    1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTA 420
            + EFSSSL Q+QRS ++   +AG +  +VCSD MARGMD+E V  VVNYDVP+  KTYIHRVGRTARAG  G+ VT+ K GQ+K   RM    D  K++P P    +  ++ L  RY   L+ L + LEAE+ G+L  T+
Sbjct:  246 IREFSSSLSQKQRSALVADCKAGRVETVVCSDAMARGMDIEDVANVVNYDVPSFIKTYIHRVGRTARAGRHGRCVTLVKMGQMKGMMRMLKKADNNKLKPYPL--QQEHMKTLVPRYTDALQQLKDTLEAEKAGKLQATS 383          
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: M4B1B7_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B1B7_HYAAE)

HSP 1 Score: 136 bits (342), Expect = 8.180e-35
Identity = 70/140 (50.00%), Postives = 93/140 (66.43%), Query Frame = 1
Query:    1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTA 420
            + EFSSSL Q+QRS ++   +AG +  +VCSD MARGMD+E +  V+NYDVP+  KTYIHRVGRTARAG  G+ VT+ K GQ+K   RM    D  K++P P   D   +++L  RY   L+ L E L+AE+ GEL  T+
Sbjct:  377 IREFSSSLSQKQRSTLVADCKAGRVDTVVCSDAMARGMDIEDIANVINYDVPSFVKTYIHRVGRTARAGRHGRCVTLVKMGQMKGMMRMLKKADTNKLKPYPLQQDH--VKSLVPRYTEALQRLKETLDAEKAGELQVTS 514          
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: A0A6A3MZZ4_9STRA (ATP-dependent RNA helicase n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MZZ4_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.810e-34
Identity = 69/140 (49.29%), Postives = 93/140 (66.43%), Query Frame = 1
Query:    1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTA 420
            + EFSSSL Q+QRS ++   +AG +  +VCSD MARGMD++ V  VVNYDVP+  KTYIHRVGRTARAG  G++VT+ K GQ+K   RM    D  K++P P    +  ++ L  RY   L+ L + LEAE+ G+L  T+
Sbjct:  373 IREFSSSLSQKQRSGLVADCKAGRVETVVCSDAMARGMDIDDVANVVNYDVPSFIKTYIHRVGRTARAGGHGRSVTLVKMGQMKGMMRMLKKADNNKLKPYPL--QQEHMKTLVPRYTEALQRLKDTLEAEKAGKLQATS 510          
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: A0A662WGQ4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WGQ4_9STRA)

HSP 1 Score: 134 bits (336), Expect = 5.810e-34
Identity = 70/140 (50.00%), Postives = 94/140 (67.14%), Query Frame = 1
Query:    1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTA 420
            V EFSSSL Q+QRS ++   +AG +  +VCSD MARGMD++ V  VVNYDVP+  KTYIHRVGRTARAG  G++VT+ K GQ+K   RM    +  K+  +P P  +  ++ L  RY + L+ L + LEAE+ G+L  TA
Sbjct:  379 VREFSSSLSQKQRSALVVDCKAGHVETVVCSDAMARGMDIDDVANVVNYDVPSFIKTYIHRVGRTARAGRHGRSVTLVKMGQMKGMTRMLKKAENNKL--QPYPLQQEHMKTLVPRYTQALQRLKDTLEAEKSGKLTATA 516          
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: A0A835YS10_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS10_9STRA)

HSP 1 Score: 134 bits (337), Expect = 8.620e-34
Identity = 70/116 (60.34%), Postives = 83/116 (71.55%), Query Frame = 1
Query:   79 VIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTAPV 426
            V+VCSDGMARGMD+ GVG VVNYD PT A+TY+HRVGRTARAG  G AVT+ K+GQV +F  MRA V+  +V   P   +    + L+ RYRRCLR L  VLEAE+ GEL   APV
Sbjct:  565 VVVCSDGMARGMDIAGVGCVVNYDAPTHARTYVHRVGRTARAGRAGLAVTLLKRGQVGQFAAMRAKVNAVEV---PGMAEAPPTDGLAARYRRCLRELAAVLEAEKRGELGAAAPV 677          
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: A0A421H1G4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421H1G4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.580e-33
Identity = 69/140 (49.29%), Postives = 92/140 (65.71%), Query Frame = 1
Query:    1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTA 420
            V EFSSSL Q+QRS ++   +A  +  +VCSD MARGMD+E +  VVNYDVP+  KTYIHRVGRTARAG  G++VT+ K GQ+K   RM    D  K++P P    +  ++ L  RY   L+ L + LEAE+ G+L  T+
Sbjct:  388 VREFSSSLSQKQRSALVADCKAKRVETVVCSDAMARGMDIEDIANVVNYDVPSFVKTYIHRVGRTARAGRHGRSVTLVKMGQMKGMMRMLKKADSNKLKPYPL--QQEHMKTLVPRYTEALQQLKDTLEAEKAGKLTATS 525          
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: D0MZI2_PHYIT (DEAD/DEAH box RNA helicase, putative n=13 Tax=Phytophthora TaxID=4783 RepID=D0MZI2_PHYIT)

HSP 1 Score: 132 bits (332), Expect = 1.980e-33
Identity = 69/140 (49.29%), Postives = 91/140 (65.00%), Query Frame = 1
Query:    1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTA 420
            + EFSSSL Q+QRS ++   +AG +  +VCSD MARGMD+E V  VVNYDVP+  KTYIHRVGRTARAG  G+ VT+ K GQ+K   RM    D  K++P      +  ++ L  RY   L+ L + LEAE+ G+L  T+
Sbjct:  375 IREFSSSLSQKQRSSLVADCKAGRVETVVCSDAMARGMDIEDVANVVNYDVPSFIKTYIHRVGRTARAGRHGRCVTLVKLGQMKSMMRMLKKADNNKLKPYAL--QQEHMKTLVPRYTEALQQLKDTLEAEKAGKLQATS 512          
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: A0A7S1Y6R5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y6R5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.150e-33
Identity = 68/140 (48.57%), Postives = 94/140 (67.14%), Query Frame = 1
Query:    1 VAEFSSSLGQRQRSRIIRRARAG-DILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPT 417
            VAEFSSSL Q +RS+++ + R   D+ V+VCSDGM+RGMDL  V LVVNYDVP+ AKTY+HR GRTARAG  G+A+++ KKGQV +F RMR+ ++  + R + +      +      Y+ C++ L  V+ AE    L PT
Sbjct:   47 VAEFSSSLSQVERSQLMTKCRQSQDVKVVVCSDGMSRGMDLPHVALVVNYDVPSFAKTYVHRCGRTARAGKVGRAISLLKKGQVVQFHRMRSLIEEPR-RVQTTSVSRELVRDSFAHYKACVKQLRVVMRAEAEENLGPT 185          
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Match: H3GNQ4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GNQ4_PHYRM)

HSP 1 Score: 131 bits (329), Expect = 5.240e-33
Identity = 67/140 (47.86%), Postives = 90/140 (64.29%), Query Frame = 1
Query:    1 VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYDVPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRPEPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTA 420
            + EFSS L Q+QRS ++   +AG +  +VCSD MARGMD++ V  VVNYDVP+  KTYIHRVGRTARAG  G++VT+ K GQ K   RM    D  K++P P    +  ++ L  RY   L+ L + LEAE+ G +  T+
Sbjct:  371 IREFSSGLSQKQRSALVADCKAGRVETVVCSDAMARGMDIDDVANVVNYDVPSFIKTYIHRVGRTARAGRHGRSVTLVKMGQTKGMMRMLKKADSNKLKPYPL--QQEHMKTLIPRYTAALQQLKDTLEAEKAGRIQATS 508          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199043.5588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSH0_ECTSI8.400e-6275.35DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A0W8D286_PHYNI6.720e-3550.00Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
M4B1B7_HYAAE8.180e-3550.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A6A3MZZ4_9STRA2.810e-3449.29ATP-dependent RNA helicase n=9 Tax=Phytophthora Ta... [more]
A0A662WGQ4_9STRA5.810e-3450.00Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A835YS10_9STRA8.620e-3460.34DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A421H1G4_9STRA1.580e-3349.29Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
D0MZI2_PHYIT1.980e-3349.29DEAD/DEAH box RNA helicase, putative n=13 Tax=Phyt... [more]
A0A7S1Y6R5_9STRA2.150e-3348.57Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
H3GNQ4_PHYRM5.240e-3347.86Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199043contigH-elongata_contig199043:119..863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score212.2
Seed ortholog evalue1.5e-52
Seed eggNOG ortholog2880.D7FSH0
Preferred nameDBP6
KEGG koko:K14807
GOsGO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017151,GO:0019899,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0350@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930123.635687-CDS-H-elongata_contig199043:118..3001622930123.635687-CDS-H-elongata_contig199043:118..300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199043 119..300 +
1691679289.9760706-CDS-H-elongata_contig199043:118..3001691679289.9760706-CDS-H-elongata_contig199043:118..300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199043 119..300 +
1622930123.6463113-CDS-H-elongata_contig199043:619..8631622930123.6463113-CDS-H-elongata_contig199043:619..863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199043 620..863 +
1691679289.9931045-CDS-H-elongata_contig199043:619..8631691679289.9931045-CDS-H-elongata_contig199043:619..863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199043 620..863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199043.5588.1prot_H-elongata_contig199043.5588.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199043 119..863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199043.5588.1

>prot_H-elongata_contig199043.5588.1 ID=prot_H-elongata_contig199043.5588.1|Name=mRNA_H-elongata_contig199043.5588.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
VAEFSSSLGQRQRSRIIRRARAGDILVIVCSDGMARGMDLEGVGLVVNYD
VPTQAKTYIHRVGRTARAGARGKAVTIAKKGQVKRFRRMRAGVDGRKVRP
EPSPPDESSLEALSGRYRRCLRHLGEVLEAERVGELDPTAPV
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mRNA from alignment at H-elongata_contig199043:119..863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199043.5588.1 ID=mRNA_H-elongata_contig199043.5588.1|Name=mRNA_H-elongata_contig199043.5588.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=745bp|location=Sequence derived from alignment at H-elongata_contig199043:119..863+ (Himanthalia elongata Himel1 dioecious)
GTGGCCGAATTTTCCAGCAGTCTGGGGCAGCGGCAGCGATCGCGCATCAT CCGACGCGCCCGGGCTGGCGACATCCTTGTCATCGTCTGTTCCGACGGAA TGGCGCGCGGCATGGATTTGGAGGGTGTTGGACTTGTGGTGAATTACGAT GTTCCCACCCAGGCCAAGACCTATATCCACAGGTGGAGCGGGGAGAAAAA AAAATAAATCATAATGATTTAAAACTATTTAGTTGTAGAAAGGGGGAACG TTGAAAAATACATATAAAAATTCAGTCTAGTTGCTGCTACGCGGCATCCG AGGGTTTCCACTAAGCGACACAACGCATTCGTTTCATTAAGAGCAAAATC TTCTTGTTGCGACGAGTCGTGACTCAGGGGCACCAGAAGAAACCGCCAGA CTAGTCTCGATACGTGCGTGTAAAAACGAAAACGAAACAGCCACATGTCT AGTGATTTACGTGCTATTAATACTTTTTAATCTTGACTTGCTTCGCCCCA GGGTCGGGCGCACAGCACGGGCCGGGGCGCGAGGCAAGGCCGTAACGATA GCGAAAAAGGGACAGGTCAAGAGGTTTCGACGGATGCGCGCAGGCGTCGA CGGGAGGAAGGTGCGGCCCGAGCCGTCCCCTCCGGACGAGTCTAGTCTCG AGGCTCTGTCCGGCCGCTACCGGCGGTGTCTGCGCCACCTGGGGGAGGTG CTAGAGGCGGAGAGGGTGGGTGAGTTGGATCCGACCGCCCCCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig199043:119..863+

>mRNA_H-elongata_contig199043.5588.1 ID=mRNA_H-elongata_contig199043.5588.1|Name=mRNA_H-elongata_contig199043.5588.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig199043:119..863+ (Himanthalia elongata Himel1 dioecious)
GTGGCCGAATTTTCCAGCAGTCTGGGGCAGCGGCAGCGATCGCGCATCAT
CCGACGCGCCCGGGCTGGCGACATCCTTGTCATCGTCTGTTCCGACGGAA
TGGCGCGCGGCATGGATTTGGAGGGTGTTGGACTTGTGGTGAATTACGAT
GTTCCCACCCAGGCCAAGACCTATATCCACAGGTGGCCGAATTTTCCAGC
AGTCTGGGGCAGCGGCAGCGATCGCGCATCATCCGACGCGCCCGGGCTGG
CGACATCCTTGTCATCGTCTGTTCCGACGGAATGGCGCGCGGCATGGATT
TGGAGGGTGTTGGACTTGTGGTGAATTACGATGTTCCCACCCAGGCCAAG
ACCTATATCCACAGGGTCGGGCGCACAGCACGGGCCGGGGCGCGAGGCAA
GGCCGTAACGATAGCGAAAAAGGGACAGGTCAAGAGGTTTCGACGGATGC
GCGCAGGCGTCGACGGGAGGAAGGTGCGGCCCGAGCCGTCCCCTCCGGAC
GAGTCTAGTCTCGAGGCTCTGTCCGGCCGCTACCGGCGGTGTCTGCGCCA
CCTGGGGGAGGTGCTAGAGGCGGAGAGGGTGGGTGAGTTGGATCCGACCG
CCCCCGTCGGTCGGGCGCACAGCACGGGCCGGGGCGCGAGGCAAGGCCGT
AACGATAGCGAAAAAGGGACAGGTCAAGAGGTTTCGACGGATGCGCGCAG
GCGTCGACGGGAGGAAGGTGCGGCCCGAGCCGTCCCCTCCGGACGAGTCT
AGTCTCGAGGCTCTGTCCGGCCGCTACCGGCGGTGTCTGCGCCACCTGGG
GGAGGTGCTAGAGGCGGAGAGGGTGGGTGAGTTGGATCCGACCGCCCCCG
TC
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