mRNA_H-elongata_contig19904.5587.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19904.5587.1
Unique NamemRNA_H-elongata_contig19904.5587.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19904.5587.1 vs. uniprot
Match: D7FNE7_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE7_ECTSI)

HSP 1 Score: 387 bits (995), Expect = 4.240e-125
Identity = 195/222 (87.84%), Postives = 212/222 (95.50%), Query Frame = 1 
Query:    1 QARAHLWELTHYCRDSVSILALVDDNMSAQEAALRDRADILVATPARLVAHLKVGNVELQDTMETLVVDEADLVLSFGYSDDIRTLTKSLPKICQGFLMSATLSPELEDLKRVVLHSPAILKLEEGARDGRLSQFYLPLQEKDDKFLVVFAFLKLGLLQGKGLFFVNDTDSSYRLKLFLEQFHIRSAVLNAELPLNSRLHILQEFNRGIFEYLLVTDDSMDV 666
            QARAHL EL HYCRD VS+LALVDDNM+AQEAALRD+AD+LVATPARLVAHLK GNVEL+DT+ETLVVDEADLVLSFGYS+DIR +TK LPKICQGFLMSATLS ELEDLKRVVLHSPA+LKLEEGARDGRLSQFYL L +K DKFLVVFAF+KLGLL+GKGLFFVN+T+SSYRLKLFLEQFH+RSAVLNAELPLNSRLHILQEFNRGIF+YL+VTDDSMDV
Sbjct:  137 QARAHLSELMHYCRDQVSLLALVDDNMAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEGARDGRLSQFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLHILQEFNRGIFDYLIVTDDSMDV 358
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BLAST of mRNA_H-elongata_contig19904.5587.1 vs. uniprot
Match: A0A6H5KX88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX88_9PHAE)

HSP 1 Score: 353 bits (905), Expect = 8.770e-114
Identity = 190/277 (68.59%), Postives = 210/277 (75.81%), Query Frame = 1 
Query:    1 QARAHLWELTHYCRDSVSILALVDDNMSAQEAALRDRADILVATPARLVAHLKVGNVELQDTMETLVVDEADLVLSFGYSDDIRTLTKSLPKICQGFLMSATLSPELEDLKRVVLHSPAILKLEEGARDGRLSQFYLPLQEKDDKFLVVFAFLKLGLLQGKGLFFVNDTDSSYRLKLFLEQFHIRSAVLNAELPLNSRLHI-------------------------------------------------------LQEFNRGIFEYLLVTDDSMDV 666
            +ARAHL EL HYCRD VS+LALVDDNM+AQEAALRD+AD+LVATPARLVAHLK GNVEL+DT+ETLVVDEADLVLSFGYS+DIR +TK LPKICQGFLMSATLS ELEDLKRVVLHSPA+LKLEEGARDGRLSQFYL L +K DKFLVVFAF+KLGLL+GKGLFFVN+T+SSYRLKLFLEQFH+RSAVLNAELPLNSRL                                                         ++EFNRGIF+YL+VTDDSMDV
Sbjct:  146 RARAHLSELMHYCRDQVSLLALVDDNMAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEGARDGRLSQFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILKAIPPFSPTMAIREFNRGIFDYLIVTDDSMDV 422
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BLAST of mRNA_H-elongata_contig19904.5587.1 vs. uniprot
Match: A0A835ZDE1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE1_9STRA)

HSP 1 Score: 335 bits (859), Expect = 2.990e-106
Identity = 173/228 (75.88%), Postives = 193/228 (84.65%), Query Frame = 1 
Query:    1 QARAHLWELTHYCRDSVSILALVDDNMSAQEAALRDRADILVATPARLVAHLKVGNVELQDTMETLVVDEADLVLSFGYSDDIRTLTKSLPKICQGFLMSATLSPELEDLKRVVLHSPAILKLEEG-----ARDGRLSQFYLPLQEKDDKFLVVFAFLKLGLLQGKGLFFVNDTDSSYRLKLFLEQFHIRSAVLNAELPLNSRLHILQEFNRGIFEYLLVTDDSMDVG 669
            Q R  LWEL  YCRD V +LALVDDNMSAQ+A LRD+ DI+VATPARLVAHLK GN+ L+D +ETLVVDEADLVLS+GY DDIR +T  LPK+CQGFLMSATLS ELE+LKRV+LHSPAILKLEEG        G L QF+L L+E  DK LVVFAFLKLGLL+GKGLFFVN TD+ YRLKLFLEQFHIRSAVLNAELPL SRLHIL+EFNRGIF+YL+ TD+SMDVG
Sbjct:  103 QVRGQLWELMAYCRDIVGLLALVDDNMSAQQAQLRDKPDIVVATPARLVAHLKAGNITLKDAVETLVVDEADLVLSYGYRDDIRHVTAHLPKVCQGFLMSATLSEELEELKRVILHSPAILKLEEGDASGGGEGGALLQFFLALREPADKNLVVFAFLKLGLLEGKGLFFVNATDACYRLKLFLEQFHIRSAVLNAELPLASRLHILEEFNRGIFDYLIATDESMDVG 330
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BLAST of mRNA_H-elongata_contig19904.5587.1 vs. uniprot
Match: A0A4D9D1T0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1T0_9STRA)

HSP 1 Score: 290 bits (743), Expect = 1.970e-92
Identity = 147/218 (67.43%), Postives = 182/218 (83.49%), Query Frame = 1 
Query:   22 ELTHYCRDSVSILALVDDN----MSAQEAALRDRADILVATPARLVAHLKVGNVELQDTMETLVVDEADLVLSFGYSDDIRTLTKSLPKICQGFLMSATLSPELEDLKRVVLHSPAILKLEEGARDGRLSQFYLPLQEKDDKFLVVFAFLKLGLLQGKGLFFVNDTDSSYRLKLFLEQFHIRSAVLNAELPLNSRLHILQEFNRGIFEYLLVTDDSMD 663
            +LT+YCRD VS+ AL+       MSAQ+A LRD+ D+LVATP+RLV+HL+ GN+ L+ +++TLV+DEADL+LSFGY +D++ +  +LP+I QG LMSATLSPEL+DLKRVVLHSPA+LKLEEG  DG L QFY+ L E D K L+VF FLKLG+L+GKGLFFVN  D+ YRLKLFLEQF IRSAVLNAELPLNSRLH LQEFNRGIF++L+ TD+S+D
Sbjct:  133 DLTYYCRDVVSVQALLGGGDAAAMSAQQALLRDQPDLLVATPSRLVSHLQAGNISLKASLQTLVMDEADLILSFGYEEDVKRVVAALPRIYQGILMSATLSPELDDLKRVVLHSPAVLKLEEGRTDGELLQFYVSLPEAD-KLLLVFVFLKLGVLEGKGLFFVNGLDACYRLKLFLEQFSIRSAVLNAELPLNSRLHTLQEFNRGIFDFLIATDESLD 349
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BLAST of mRNA_H-elongata_contig19904.5587.1 vs. uniprot
Match: A0A421GZS4_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GZS4_9STRA)

HSP 1 Score: 291 bits (746), Expect = 1.010e-89
Identity = 141/221 (63.80%), Postives = 186/221 (84.16%), Query Frame = 1 
Query:    1 QARAHLWELTHYCRDSVSILALVDDNMSAQEAALRDRADILVATPARLVAHLKVGNVELQDTMETLVVDEADLVLSFGYSDDIRTLTKSLPKICQGFLMSATLSPELEDLKRVVLHSPAILKLEEGARDGRLSQFYLPLQEKDDKFLVVFAFLKLGLLQGKGLFFVNDTDSSYRLKLFLEQFHIRSAVLNAELPLNSRLHILQEFNRGIFEYLLVTDDSMD 663
            Q R H+ EL +YC+D+VS+LAL   +M+AQ+A LRD  D+LVATP RLVAHL+ GN+ L+D+++T+V+DEADLVLSFGY +D+RT+  +LPK CQ F MSATLSPELE LK+ VLH+PA++KLEEGA DG+L QFYLP++E D K L+++A L+LG++ GK +FFVN TD++YRLKLF EQF I+SAVLNA+LP NSR HI++EFNRG+F+YL+ TDDS+D
Sbjct:  109 QTRRHMLELMYYCQDTVSLLALGGQSMNAQQALLRDAPDVLVATPGRLVAHLEAGNLTLKDSVQTVVIDEADLVLSFGYGEDVRTIFNALPKACQTFCMSATLSPELEKLKKSVLHNPAVVKLEEGATDGKLQQFYLPVKESD-KDLLLYALLRLGVVHGKVIFFVNSTDAAYRLKLFFEQFVIKSAVLNAKLPHNSRQHIIEEFNRGLFDYLIATDDSVD 328
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BLAST of mRNA_H-elongata_contig19904.5587.1 vs. uniprot
Match: W7TVX7_9STRA (Putative atp-dependent rna helicase ddx56 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVX7_9STRA)

HSP 1 Score: 290 bits (742), Expect = 2.570e-88
Identity = 147/218 (67.43%), Postives = 182/218 (83.49%), Query Frame = 1 
Query:   22 ELTHYCRDSVSILALVDDN----MSAQEAALRDRADILVATPARLVAHLKVGNVELQDTMETLVVDEADLVLSFGYSDDIRTLTKSLPKICQGFLMSATLSPELEDLKRVVLHSPAILKLEEGARDGRLSQFYLPLQEKDDKFLVVFAFLKLGLLQGKGLFFVNDTDSSYRLKLFLEQFHIRSAVLNAELPLNSRLHILQEFNRGIFEYLLVTDDSMD 663
            +LT+YCRD VS+ AL+       MSAQ+A LRD+ D+LVATP+RLV+HL+ GN+ L+ +++TLV+DEADL+LSFGY +D++ +  +LP+I QG LMSATLSPEL+DLKRVVLHSPA+LKLEEG  DG L QFY+ L E D K L+VF FLKLG+L+GKGLFFVN  D+ YRLKLFLEQF IRSAVLNAELPLNSRLH LQEFNRGIF++L+ TD+S+D
Sbjct:  133 DLTYYCRDVVSVQALLGGGDAAAMSAQQALLRDQPDLLVATPSRLVSHLQAGNISLKASVQTLVMDEADLILSFGYEEDVKRVVAALPRIYQGILMSATLSPELDDLKRVVLHSPAVLKLEEGRTDGELLQFYVSLPEAD-KLLLVFVFLKLGVLEGKGLFFVNGLDACYRLKLFLEQFSIRSAVLNAELPLNSRLHTLQEFNRGIFDFLIATDESLD 349
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BLAST of mRNA_H-elongata_contig19904.5587.1 vs. uniprot
Match: H3GBC9_PHYRM (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=H3GBC9_PHYRM)

HSP 1 Score: 288 bits (738), Expect = 2.730e-88
Identity = 141/221 (63.80%), Postives = 185/221 (83.71%), Query Frame = 1 
Query:    1 QARAHLWELTHYCRDSVSILALVDDNMSAQEAALRDRADILVATPARLVAHLKVGNVELQDTMETLVVDEADLVLSFGYSDDIRTLTKSLPKICQGFLMSATLSPELEDLKRVVLHSPAILKLEEGARDGRLSQFYLPLQEKDDKFLVVFAFLKLGLLQGKGLFFVNDTDSSYRLKLFLEQFHIRSAVLNAELPLNSRLHILQEFNRGIFEYLLVTDDSMD 663
            Q R H+ EL +YC+D+VS+LAL   +MSAQ+A LRD  D+LVATP RLVAHL+ GN+ L+++++T+V+DEADLVLSFGY +DIRT+  +LPK CQ F MSATLSPELE LKR VLH+PA++KLEEGA DG+L QFYLP++  D K L+++A L+LG++ GK +FFVN T+++YRLKLF EQF I+SAVLNA+LP NSR HI++EFNRG+F+YL+ TDDS+D
Sbjct:  107 QTRRHMTELMYYCQDTVSLLALGGQSMSAQQALLRDAPDVLVATPGRLVAHLEAGNLTLKESVQTVVIDEADLVLSFGYGEDIRTIFNALPKACQTFCMSATLSPELEKLKRSVLHNPAVVKLEEGATDGKLQQFYLPVKPAD-KDLLLYALLRLGVVSGKVIFFVNSTEAAYRLKLFFEQFVIKSAVLNAKLPHNSRQHIIEEFNRGLFDYLIATDDSVD 326
[Close]
BLAST of mRNA_H-elongata_contig19904.5587.1 vs. uniprot
Match: A0A397AWM6_9STRA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AWM6_9STRA)

HSP 1 Score: 277 bits (709), Expect = 2.940e-88
Identity = 130/221 (58.82%), Postives = 179/221 (81.00%), Query Frame = 1 
Query:    1 QARAHLWELTHYCRDSVSILALVDDNMSAQEAALRDRADILVATPARLVAHLKVGNVELQDTMETLVVDEADLVLSFGYSDDIRTLTKSLPKICQGFLMSATLSPELEDLKRVVLHSPAILKLEEGARDGRLSQFYLPLQEKDDKFLVVFAFLKLGLLQGKGLFFVNDTDSSYRLKLFLEQFHIRSAVLNAELPLNSRLHILQEFNRGIFEYLLVTDDSMD 663
            Q +AHLWEL +YCRD VS+L L    ++AQ+A LRD  DIL+ TP+RLV HL  GNV+L+ ++ T+V+DEAD++LSFGY DD++ +  +LPKICQ F MSATLSPEL+ LK+ +LH+PA++KLEEG+ DG+L+Q+YLP+  K DK L+++A +KLG++ GK +FFVN T ++YRLKLF EQF I +AVLN++LP NSR HI+++FNRG+ +YL+ TDDSMD
Sbjct:  104 QTKAHLWELMYYCRDIVSVLGLSGQTVNAQQALLRDLPDILITTPSRLVVHLDAGNVDLKHSVHTVVMDEADMILSFGYGDDVKKIFNALPKICQHFFMSATLSPELDALKKALLHNPAVVKLEEGSSDGKLTQYYLPVA-KQDKDLLLYALIKLGIVHGKIIFFVNSTSAAYRLKLFFEQFLIPAAVLNSQLPHNSRQHIIEQFNRGLIDYLIATDDSMD 323
[Close]
BLAST of mRNA_H-elongata_contig19904.5587.1 vs. uniprot
Match: A0A3M6VU95_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VU95_9STRA)

HSP 1 Score: 287 bits (734), Expect = 1.220e-87
Identity = 141/221 (63.80%), Postives = 184/221 (83.26%), Query Frame = 1 
Query:    1 QARAHLWELTHYCRDSVSILALVDDNMSAQEAALRDRADILVATPARLVAHLKVGNVELQDTMETLVVDEADLVLSFGYSDDIRTLTKSLPKICQGFLMSATLSPELEDLKRVVLHSPAILKLEEGARDGRLSQFYLPLQEKDDKFLVVFAFLKLGLLQGKGLFFVNDTDSSYRLKLFLEQFHIRSAVLNAELPLNSRLHILQEFNRGIFEYLLVTDDSMD 663
            Q R H+ EL +YC+D+VS+LAL   +M+AQ+A LRD  D+LVATP RLVAHL+ GN+ L+D+++T+V+DEADLVLSFGY +DIRT+  +LPK CQ F MSATLSPELE LKR VLH+PA++KLEEGA DG+L QFYL ++  D K L+++A L+LG++ GK +FFVN TD++YRLKLF EQF I+SAVLNA+LP NSR HI++EFNRG+F+YL+ TDDS+D
Sbjct:  107 QTRRHMIELMYYCQDTVSLLALGSQSMNAQQALLRDAPDVLVATPGRLVAHLEAGNLTLKDSVQTVVIDEADLVLSFGYGEDIRTIFNALPKACQTFCMSATLSPELEKLKRSVLHNPAVVKLEEGATDGKLQQFYLSVKAVD-KDLLLYALLRLGVVSGKVIFFVNSTDAAYRLKLFFEQFVIKSAVLNAKLPHNSRQHIIEEFNRGLFDYLIATDDSVD 326
[Close]
BLAST of mRNA_H-elongata_contig19904.5587.1 vs. uniprot
Match: A0A662YEI0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YEI0_9STRA)

HSP 1 Score: 285 bits (729), Expect = 8.290e-87
Identity = 141/221 (63.80%), Postives = 181/221 (81.90%), Query Frame = 1 
Query:    1 QARAHLWELTHYCRDSVSILALVDDNMSAQEAALRDRADILVATPARLVAHLKVGNVELQDTMETLVVDEADLVLSFGYSDDIRTLTKSLPKICQGFLMSATLSPELEDLKRVVLHSPAILKLEEGARDGRLSQFYLPLQEKDDKFLVVFAFLKLGLLQGKGLFFVNDTDSSYRLKLFLEQFHIRSAVLNAELPLNSRLHILQEFNRGIFEYLLVTDDSMD 663
            Q R HL EL +YC D VS+LAL   +MSAQ+A LRD  D+LVATP RLVAHL+ GN+ L+D+++T+V+DEADLVLSFGY +D+R +  +LPK CQ F MSATLSPELE LKR VLH+PA++KLEEGA DG+L QFYLP+ +  DK L+++A L+LG++ GK +FFVN T ++YRLKLF EQF I+SAVLNA+LP NSR HI++EFNRG+F+YL+ TDDS+D
Sbjct:  109 QTRRHLLELMYYCSDVVSLLALGGQSMSAQQALLRDAPDVLVATPGRLVAHLEAGNLTLKDSVQTVVIDEADLVLSFGYGEDVRAIFNALPKACQTFCMSATLSPELEKLKRSVLHNPAVVKLEEGATDGKLQQFYLPV-DAADKDLLLYALLRLGVVHGKVIFFVNTTATAYRLKLFFEQFVIKSAVLNAQLPHNSRQHIIEEFNRGLFDYLIATDDSVD 328
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19904.5587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNE7_ECTSI4.240e-12587.84DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KX88_9PHAE8.770e-11468.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDE1_9STRA2.990e-10675.88DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A4D9D1T0_9STRA1.970e-9267.43Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A421GZS4_9STRA1.010e-8963.80Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
W7TVX7_9STRA2.570e-8867.43Putative atp-dependent rna helicase ddx56 n=1 Tax=... [more]
H3GBC9_PHYRM2.730e-8863.80Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]
A0A397AWM6_9STRA2.940e-8858.82Helicase ATP-binding domain-containing protein (Fr... [more]
A0A3M6VU95_9STRA1.220e-8763.80Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A662YEI0_9STRA8.290e-8763.80Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19904contigH-elongata_contig19904:384..6873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score388.7
Seed ortholog evalue3e-105
Seed eggNOG ortholog2880.D7FNE7
Preferred nameDDX56
KEGG koko:K14810
GOsGO:0000463,GO:0000470,GO:0003674,GO:0003676,GO:0003678,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0010720,GO:0010975,GO:0010976,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022613,GO:0030154,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033677,GO:0033680,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046483,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051276,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0120035,GO:0140097,GO:0140098,GO:1901360,GO:1901363,GO:2000026
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0346@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons6
Model size1065
Cds size1065
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19904.5587.1prot_H-elongata_contig19904.5587.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19904 384..6873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930123.4859326-CDS-H-elongata_contig19904:383..5631622930123.4859326-CDS-H-elongata_contig19904:383..563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19904 384..563 -
1691679289.921608-CDS-H-elongata_contig19904:383..5631691679289.921608-CDS-H-elongata_contig19904:383..563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19904 384..563 -
1622930123.4998252-CDS-H-elongata_contig19904:626..9021622930123.4998252-CDS-H-elongata_contig19904:626..902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19904 627..902 -
1691679289.931011-CDS-H-elongata_contig19904:626..9021691679289.931011-CDS-H-elongata_contig19904:626..902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19904 627..902 -
1622930123.5106273-CDS-H-elongata_contig19904:1315..14471622930123.5106273-CDS-H-elongata_contig19904:1315..1447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19904 1316..1447 -
1691679289.9386594-CDS-H-elongata_contig19904:1315..14471691679289.9386594-CDS-H-elongata_contig19904:1315..1447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19904 1316..1447 -
1622930123.5271058-CDS-H-elongata_contig19904:3466..35931622930123.5271058-CDS-H-elongata_contig19904:3466..3593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19904 3467..3593 -
1691679289.950362-CDS-H-elongata_contig19904:3466..35931691679289.950362-CDS-H-elongata_contig19904:3466..3593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19904 3467..3593 -
1622930123.57656-CDS-H-elongata_contig19904:5692..58561622930123.57656-CDS-H-elongata_contig19904:5692..5856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19904 5693..5856 -
1691679289.9580069-CDS-H-elongata_contig19904:5692..58561691679289.9580069-CDS-H-elongata_contig19904:5692..5856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19904 5693..5856 -
1622930123.5898483-CDS-H-elongata_contig19904:6687..68731622930123.5898483-CDS-H-elongata_contig19904:6687..6873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19904 6688..6873 -
1691679289.967896-CDS-H-elongata_contig19904:6687..68731691679289.967896-CDS-H-elongata_contig19904:6687..6873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19904 6688..6873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19904.5587.1

>prot_H-elongata_contig19904.5587.1 ID=prot_H-elongata_contig19904.5587.1|Name=mRNA_H-elongata_contig19904.5587.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=355bp
QARAHLWELTHYCRDSVSILALVDDNMSAQEAALRDRADILVATPARLVA
HLKVGNVELQDTMETLVVDEADLVLSFGYSDDIRTLTKSLPKICQGFLMS
ATLSPELEDLKRVVLHSPAILKLEEGARDGRLSQFYLPLQEKDDKFLVVF
AFLKLGLLQGKGLFFVNDTDSSYRLKLFLEQFHIRSAVLNAELPLNSRLH
ILQEFNRGIFEYLLVTDDSMDVGRRREEDARAEHEQDNVVAGDDLQEGEG
GEESSSSSEGSDSSSASDDEMEEEEKEEDKDCRVDTSREDTEKMDRAQVK
VASSETLSSSSKRSGSGDRRGGKSSRRKKGGGGTLAGESSEFGVARGVDF
RGVSF
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mRNA from alignment at H-elongata_contig19904:384..6873-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19904.5587.1 ID=mRNA_H-elongata_contig19904.5587.1|Name=mRNA_H-elongata_contig19904.5587.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6490bp|location=Sequence derived from alignment at H-elongata_contig19904:384..6873- (Himanthalia elongata Himel1 dioecious)
CAGGCTCGCGCGCACCTGTGGGAGTTAACGCACTACTGCCGCGACTCTGT
GTCTATTCTAGCACTGGTGGATGACAACATGTCGGCGCAGGAGGCAGCCC
TTAGGGACCGCGCGGACATCTTGGTGGCGACGCCTGCCAGGCTCGTGGCG
CATCTGAAAGTAGGGAACGTGGAGCTTCAAGACACCGTGAGTATATTTAT
ATATAGAGTAGGCGTTTCGCGACCCCGCCTTCCCCACTTTAGTGCTATGA
GTCAATTGGTTAATTACTTTGCATATTTATTACATTTTGAAGATACCGCA
CCCGTAATCCCATAATCCCACAATCTGGCCCCTATCATACTATTCATTAT
ATAATACTTGCGCGCGCATGTGTATATATATATATATATTAAATTGATAG
CCACACATAACCGCGCAATCCGGTTCCATCCGGGGAGTACTTTTTTTTGT
GGGCTTATTTTTGGTTGGAAATACGCCTGCGTGCGGGCACAACTCCTCTC
CGCACGACCGCGACCACGGCTCTCGACCGTAACGCCATTTCCTCTATATC
AACCACAACGCTCTGCCCGGAGAAACATATGGCGACGAAAACACGGGAAA
GGATGGACATGCTTATCCCCCTCTAACACATGGGTAAAGCTAGTCACTCG
CCGCTTGACGCAGCAAACTGAGAGGGGAATCCGACAACGTACTGCAGCAG
TGGTGCGGTCATTACGACCCCTTTCCCCTATAATCGCCCAGTCAATGCGG
GTCCCGACTACACCTGCACATCTCTCCTCATTTCTATGCAAGAAAATAGA
AAATCCTCGCAAGCCATAACGCCTCCTGGCCTGGGGATGGGAACACCAAC
CATGAGTTGTTCCCTGTGCTCGAATCCGAATCTTGAGCATAAGTAAGGAA
AACATTTTGTTTTAGATGTACTGTGTATGTATTGTGTTTGTGTCTGTGTG
TAGGGGGATTCTCTGACCCTAACCCCTATGGATCTATCGACTATTACGAC
GCCTATCTGCTTGAAAGATGGAAACCCTGGTGGTGGACGAGGCAGACTTG
GTCCTCTCCTTCGGTTACTCGGACGACATCCGCACGCTCACCAAGAGCCT
ACCCAAGATCTGCCAAGGTTTTCTCATGTCGGCCACGCTCAGCCCGGAGC
TGGAAGACCTGAAGCGCGTGGTCCTCCACAGGTACACCGCGAAACATCGC
TTTCCGCTGACGATATAGTGTGCTCTGCTCTGCTCTGCTGTGCTGTTGTA
TAGGTGGAACTCGATCTACTTTAGGCGGGGTGGTTGGTGCCCAGGGCTAA
TTCGATGATACCGTAGAGCGATAAAATGAGAGGGAGGGGGCGATTAGAGG
CGGCAGAAAGAGTCGCAAACGGCCTCAGTCCAGATACTGTCGAGGGTAGG
ACTGTGTATGCGTAACCGGGTGGCGGGGTGATTGACGTGGCGGCGGCGTC
GTAGATTCGGCGTTTTGATGACGACCAAATCGATGTCGTAGGCATAAAAC
CCCGATACTGTCGTGTGGTTTCGAAAAAGTATTTAGCCTAATTTGTTGCT
AACAAAAAAGACCCCACATATACACATATACGTACACACACAAACTGTTC
TTATTTGTACTAATTGAATCCCGTGCGGGGTAAAAATCACGCCTCCGTAT
ATGGGACGCCCTCTTATCAGCTTTATGTGTTATTTTTACTCTTTTACGCA
CGAGTATTTAAAACCGTGAATTCTGGCTCCCAGCGATCTCGAACTTCAAA
ATAGCTGTATTAAAATATTTTTCTGAAAAAAAAACTTGAACTTATCCCAA
CCCTTCGAACATCCACACCTTCTTAGCATCGTAAAGGTTGTGCAATCCAG
GGGACCAACCATCGTCAGGTTCGAAATGCCTCGAAACGAAAAGCTTCGGG
CCTTCGAACTTCGAACCCCGGGGAATTTACTTCACGTTTGCGGTTACTCT
GTCAAACGGTAGATATCATACCGCTAGACCAGTCAGTCAACTTGGTACTG
TATACTTCGTATTATTTATTTTGAGACCTCAGTCAGTGTCTCACCGCGAT
TAGATCTTGTAGCATGGGGGCGGGGGTAATAGAATCCCATCCCCTGTCCA
TATTTCCCTCCCTTTCTTGTAGCAAAGATACATATATATATATATATATA
TATATATTTAAGCTGTGCTTGGGAAACTATTTCCAACGTAGCATAGGTTA
ACAGATTTAAACTCCGCGCCATACATTTCTGGAGGAGGGGGTTTCCTTTC
CCAGGAAGCGTTTTCATTGGCTATTTCGATTACCCCCCCCACCACCACCC
CTGGTTTAGCGTTTTTACTTCTAAAGATGTTGCTTCCTGTTTTTGTGTTG
CCTCTGTTGAACTTGTGTCATTCTCACATACATTAGGCCTTTTCAACGAT
TGGAAGGATTAGGGGGAGGCGTTATCCTCTCTATTTACAGAGTGCGTAAT
TTGAGCTCGTGGCGCCATCTCAACAGCCCATGGAACCTAAAGGATCTCCC
ATAGAATGAATTCAGGCCCGCTTGCCTTTAAACATCTAACACATATGTGT
ATATATATATATATACCTTGTACCACAGGCTGGATTTTGACATCAGTTTA
TTATGTGAGAATTCAATCAATCAAAAATCAAAATCATACTAAATATATAC
TAAATGTAATATTGTAGATAGGTACATATATTTTTATGCTTGTGGAGCCC
TACGGACCAGAAAGTGTTTTGTGTGTGCTTATCGCAGTGTGGCAATTCAA
TAATTTCTCTCTCTCTCTCTCTCTCTCTCTCTAGTCTATGTATATTTATA
TATGTTGACTGCGATTTGCCCCGTCGTACTATATCGCAGTGTGTACGGCA
ACGATGTTTGTCGATATATCGAACGATGCGATGATATAATCTATCTATTG
GCTTGGGCGTTTTGCCGATACTTCGATATATATATAGTATATCGATGGCA
GATGTATGTCGATATATCCGTGTTTGCTCACTGCTAGCGGGGGCCCTCAC
CAGCCAGGAGGTTGTTGGGGGCTCTGCGGGGTTTTTTGCTATCGCAAAAA
AACGCGGCGGGGCCACCTCGCTTCGCTCGGATGCCGACATATATGTAGTA
TCGGCGCTGCGGTTTCGATACACATCCCTATTCATATAAATCGCCCTTTC
TCTCTCCCCATGATTGTATTAAAGGTTATGTTCCTGTTATATTCATTGCG
TGCTCTTGGCCGTCTCCGGTCCCGTCTGTGTTGTCTCGTTATCTCCGTCG
ACCCTGTTCCCCTCCCTTCCCCTTTGGAAGCCCGGCGATCCTGAAGCTGG
AAGAGGGGGCTCGCGACGGGCGCTTGTCGCAGTTTTATCTGCCGCTGCAG
GAGAAGGATGACAAGTTCCTGGTCGTGTTTGCCTTTCTCAAGCTGGGGCT
GCTCCAGGTATAGGTCGGTCCGTCGTTCGGTAGGCCCCCATCCCTCATCC
CTCAGATAAGCCAGGTATCCAGATGCGGTTATAGGTATTTCAGATGCTCC
GTCTCGTTTCTTGTTTCATGCAGTCCCAAAAATATCACACAGCCTCCGTT
GCAGCGGCGAGTTTGAGCGGCGAACGAGCAGACCTAGGGAGGTTCGTGAG
GAGGTTCAGGGCGTCGAAATATTTCAATATATGTATACTTTATATATATT
ATAAGACGCCGAAGAATAACCGTTGATCCGATGAGTTTACGCTTGGGTGA
CGCGATTTATCACATGTGACGATTTTGTGCTAAAGGTAGTAATGTCTAAA
ACATCCGAACCTGACGATAGTTGGTCCCCTGGACTGCACCTCTGACGGCG
CTAAGAAGGGGTGGATGTTGGTGGAATGAATTGATAAGTTTTTATAGGAA
TAATGCATTATAATAAAATCGATCTAGAGATAATATAGAGGCCCTTTTGA
TGGATAAATAATTGGATAAATGGGAAAATAATGGGATCACTTTCTGTGGT
CGTGTTCTCCAACATACTAGTATTAGAAGTAGTAGTATTTCTATACCGGT
AGATGTACTGGCGTACTGTGACTTCTACTGTATCTATAGCACGTGCCCAC
TCTACCACTAGTGGGTGTGGGAAAAGAGAGGCATACAGTAATATTGGTAC
ATGGGGTTACCTGAATAGGCTTCACCTGTCGCTCAAACTACCTTGATGAC
CATTGGCTCAGTGCCGGCGGACTCTCGGTAGTAAACGCCATCGATACGCA
ATTGCGTGACCTGATGAAATCGAGATTGGCCCGATGGCGGTTGACGGTAG
AGATGGACGTCATCGCGGAAAACGAGAGGATCGCGGGGGTACGCACCAGA
TTCAGCGTGGGTTGAAAGAATAAGCAGGCTGACGCGGGACGGGACTGCTG
AAACTATCTCGCGAGACCAAATTCTCAGGCGCGAACGGGGACAGGGGAAA
ATTAATTTTCGCTATATATAATGACGTCATGTCCACACACTGCGCTGTCT
GTCTGCCTTACTATATACCAGCACGATAGGCCCGCGTCCCGATAGACACA
TCCAGTTCGTTACGAACTCTGAGTGTTCTCTTTTTCTTTTTCTTTTTTGA
GAGAGAGAGAGAGAGTACCTTGAACGTTCTTTCTCCTTTCCGGATGGTGT
GTTTTTTCTACCTTGTGACCACGGGCTAGATTTTGACATCAGCTTATGTG
AGAATTCAATCAATCAATTCAATCATATATCTGTCTCAATATAATCCTCA
AACACTGACGGTTCCCGACACGTTGTCCATTTTATTTTATTTTATTTTAT
TCGTTTGTTTATCGACAAAGGTCTTGGGTGTATTGTTCCAGCACATAAAT
TGTTTCGGGACGGGGTGTTTGTTTTTGTGCATGCATGGGTGCGCAGATTG
CACAGCTAGGGATTATGGATGAATATGGATGATTATGGATGCCCCCCATT
GTAGTATACTGATATCTAATATACAAATCGAGACGAGGGTGTTGTGGGCG
GCTTATCATACCGGGACAGAGAGCGGGCGGCCCTGCCCTCTCCTCTTGGG
AGGGTAGGAACTAATCCTTTTTCTTACGTCCACACGAACACACACAAGTC
TAGTCTAGCCATGGTTCTGTTGGGTCTGGGATGCGCGGCGTACCGGGGTT
TGCCGTTTCGTCGCGGCCGTGACACACTCGAAAGACCCCAAACGTAAGTT
ATAGAAGAGAAGGCTTTTTCTGAGCCAGACACCTTTCTTCCCTTTTTCTA
TTTTTGTTTTGTAAAATGTGAATAGTGTCGACCACAATCCCCTGGAAAAA
TCCCGAGTGGAAACCCTCCTAGACCGGAAACGTTGTAATTAATTAACCAT
TCATACATACGGAAACATGCGACGCAGTAAAATAACGGGCGTGATGAAAG
TACGCAGAGAAGCTTGAGAGCCTTACGGCGCTACCGTCGGTGGTGTGCTC
GTTGCTCCATTATCGTCGCCGCGCAGGGCAAGGGGCTCTTCTTCGTCAAC
GACACGGACTCCTCTTACCGCCTAAAGCTATTCCTCGAGCAATTCCACAT
CCGGTCCGCCGTCCTCAACGCCGAGCTGCCCCTCAATTCGAGGCTCCATA
TCCTGCAGGTCAGACGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGT
ATGGCGACGTGGCGAAGCAACTCGAATCCAATCCAATCCAATTCATCGCT
GCTGAGGTTTTGGGGTCTATTTTTGGTGGTGATTTTTGAGTCTGGGTTTG
CTCCTCTCCCACCGCCTCTGCGCGGGAGATGAAACAGACAGTTGGAGAGC
GAACTTTCCTCGGAACGTTCTGGGAAATGGATTGCCTTATTTTGTGAGTG
TTTTCTGATGGATGCGTGAATGTTTTGGGCGAAGAGATGAGCCTCCGATT
GCTGTGATATGAGAGTGCAAGCTCGCGTGCGTTACCGAATCGCCGTGGGT
GACAGTCCCGCCACTCTTTTTTTCACTGACTGGAGTATCGGGGACACTGC
ACGTCGCGCGCGCGCATGCAGGAGTTCAACCGAGGCATATTCGAGTACCT
GCTCGTCACCGACGATAGCATGGATGTGGGAAGAAGAAGGGAAGAGGACG
CTAGGGCTGAACACGAACAGGACAACGTAGTCGCGGGAGATGACCTCCAA
GAGGGGGAAGGGGGAGAAGAAAGTTCGTCGTCGTCAGAGGGAAGCGATTC
GTCGTCAGCTTCTGACGATGAGATGGAGGAGGAGGAGAAGGAGGAAGATA
AGGACTGTAGAGTAGATACAAGTAGAGAAGACACGGAAAAAATGGATGTC
GTGGGTCGAGGAGGCGTTGAGATCGAGGGGATGGACCAAGGAGATCCTCG
AAACCTGGAGCGAGCGCAGGTGAAGGTAGCTTCATCCGAAACTCTTTCAT
CTTCCTCCAAGCGAAGCGGTAGTGGTGACAGAAGAGGAGGGAAGAGCTCG
AGGAGGAAAAAAGGCGGTGGTGGGACTCTGGCGGGAGAGTCATCAGAATT
CGGCGTCGCCCGCGGGGTGGACTTCCGGGGGGTTTCGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig19904:384..6873-

>mRNA_H-elongata_contig19904.5587.1 ID=mRNA_H-elongata_contig19904.5587.1|Name=mRNA_H-elongata_contig19904.5587.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2130bp|location=Sequence derived from alignment at H-elongata_contig19904:384..6873- (Himanthalia elongata Himel1 dioecious)
CAGGCTCGCGCGCACCTGTGGGAGTTAACGCACTACTGCCGCGACTCTGT
GTCTATTCTAGCACTGGTGGATGACAACATGTCGGCGCAGGAGGCAGCCC
TTAGGGACCGCGCGGACATCTTGGTGGCGACGCCTGCCAGGCTCGTGGCG
CATCTGAAAGTAGGGAACGTGGAGCTTCAAGACACCCAGGCTCGCGCGCA
CCTGTGGGAGTTAACGCACTACTGCCGCGACTCTGTGTCTATTCTAGCAC
TGGTGGATGACAACATGTCGGCGCAGGAGGCAGCCCTTAGGGACCGCGCG
GACATCTTGGTGGCGACGCCTGCCAGGCTCGTGGCGCATCTGAAAGTAGG
GAACGTGGAGCTTCAAGACACCATGGAAACCCTGGTGGTGGACGAGGCAG
ACTTGGTCCTCTCCTTCGGTTACTCGGACGACATCCGCACGCTCACCAAG
AGCCTACCCAAGATCTGCCAAGGTTTTCTCATGTCGGCCACGCTCAGCCC
GGAGCTGGAAGACCTGAAGCGCGTGGTCCTCCACAGATGGAAACCCTGGT
GGTGGACGAGGCAGACTTGGTCCTCTCCTTCGGTTACTCGGACGACATCC
GCACGCTCACCAAGAGCCTACCCAAGATCTGCCAAGGTTTTCTCATGTCG
GCCACGCTCAGCCCGGAGCTGGAAGACCTGAAGCGCGTGGTCCTCCACAG
CCCGGCGATCCTGAAGCTGGAAGAGGGGGCTCGCGACGGGCGCTTGTCGC
AGTTTTATCTGCCGCTGCAGGAGAAGGATGACAAGTTCCTGGTCGTGTTT
GCCTTTCTCAAGCTGGGGCTGCTCCAGCCCGGCGATCCTGAAGCTGGAAG
AGGGGGCTCGCGACGGGCGCTTGTCGCAGTTTTATCTGCCGCTGCAGGAG
AAGGATGACAAGTTCCTGGTCGTGTTTGCCTTTCTCAAGCTGGGGCTGCT
CCAGGGCAAGGGGCTCTTCTTCGTCAACGACACGGACTCCTCTTACCGCC
TAAAGCTATTCCTCGAGCAATTCCACATCCGGTCCGCCGTCCTCAACGCC
GAGCTGCCCCTCAATTCGAGGCTCCATATCCTGCAGGGCAAGGGGCTCTT
CTTCGTCAACGACACGGACTCCTCTTACCGCCTAAAGCTATTCCTCGAGC
AATTCCACATCCGGTCCGCCGTCCTCAACGCCGAGCTGCCCCTCAATTCG
AGGCTCCATATCCTGCAGGAGTTCAACCGAGGCATATTCGAGTACCTGCT
CGTCACCGACGATAGCATGGATGTGGGAAGAAGAAGGGAAGAGGACGCTA
GGGCTGAACACGAACAGGACAACGTAGTCGCGGGAGATGACCTCCAAGAG
GGGGAAGGGGGAGAAGAAAGTTCGTCGTCGTCAGAGGGAAGCGATTCGTC
GTCAGCTTCTGACGATGAGATGGAGGAGGAGGAGAAGGAGGAAGATAAGG
ACTGTAGAGTAGATACAAGTAGAGAAGACACGGAAAAAATGGATGAGTTC
AACCGAGGCATATTCGAGTACCTGCTCGTCACCGACGATAGCATGGATGT
GGGAAGAAGAAGGGAAGAGGACGCTAGGGCTGAACACGAACAGGACAACG
TAGTCGCGGGAGATGACCTCCAAGAGGGGGAAGGGGGAGAAGAAAGTTCG
TCGTCGTCAGAGGGAAGCGATTCGTCGTCAGCTTCTGACGATGAGATGGA
GGAGGAGGAGAAGGAGGAAGATAAGGACTGTAGAGTAGATACAAGTAGAG
AAGACACGGAAAAAATGGATCGAGCGCAGGTGAAGGTAGCTTCATCCGAA
ACTCTTTCATCTTCCTCCAAGCGAAGCGGTAGTGGTGACAGAAGAGGAGG
GAAGAGCTCGAGGAGGAAAAAAGGCGGTGGTGGGACTCTGGCGGGAGAGT
CATCAGAATTCGGCGTCGCCCGCGGGGTGGACTTCCGGGGGGTTTCGTTC
CGAGCGCAGGTGAAGGTAGCTTCATCCGAAACTCTTTCATCTTCCTCCAA
GCGAAGCGGTAGTGGTGACAGAAGAGGAGGGAAGAGCTCGAGGAGGAAAA
AAGGCGGTGGTGGGACTCTGGCGGGAGAGTCATCAGAATTCGGCGTCGCC
CGCGGGGTGGACTTCCGGGGGGTTTCGTTC
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