mRNA_H-elongata_contig199013.5585.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199013.5585.1
Unique NamemRNA_H-elongata_contig199013.5585.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: D7FL93_ECTSI (Thioredoxin O n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL93_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.860e-28
Identity = 45/61 (73.77%), Postives = 55/61 (90.16%), Query Frame = 1
Query:   13 RDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
            R+K+ LYFTAKWCPPCRRIGPF  ELS+ETP+V+FGK+DID+N EAA +A++ SVPTFKFF
Sbjct:   51 REKSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTFKFF 111          
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: A0A1E7F829_9STRA (Thioredoxin domain-containing protein n=3 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F829_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 6.430e-20
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
            F+   +K+ LYFTA WCPPC+ I P +  LSDE P+++FGKIDID+N ++A+   + SVPTF FF
Sbjct:   48 FIKMNEKSILYFTATWCPPCKLIKPVYESLSDEYPNISFGKIDIDDNQDSAMEYEISSVPTFLFF 112          
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: X1A998_9ZZZZ (Thioredoxin domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1A998_9ZZZZ)

HSP 1 Score: 81.3 bits (199), Expect = 1.750e-18
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
            F S  DK+ LYFTA WCPPC+ I P +  ++ E P VAFGK+DID+N EAA    +  VPTF  F
Sbjct:   16 FKSINDKSILYFTATWCPPCKMIKPIYENMAKENPEVAFGKVDIDDNAEAAAKYEISGVPTFILF 80          
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: A0A836CF79_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF79_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.800e-18
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    7 SRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
            S +DK  LYFTAKWCPPCRRI P + +L+ E   V F K+DID N  AA  A +MSVPTF F+
Sbjct:   64 SSKDKAVLYFTAKWCPPCRRIAPMYQDLAAEKSDVHFYKVDIDVNKAAAKDAGIMSVPTFIFY 126          
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: A0A7S1C0K1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C0K1_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 7.250e-18
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
            F S  +K+ LYFTA WCPPC+ I P +  ++ E P VAFGK+D+D+N E+A    +  VPTF FF
Sbjct:   44 FKSINEKSILYFTATWCPPCKMIKPVYENMAKENPDVAFGKVDVDDNAESAAKYKISGVPTFVFF 108          
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: A0A7S2P9F2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P9F2_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.660e-17
Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
            F    DK+ +YFTA WCPPC+ I P +TE+S++   VAFGK+D+D+N+++AV   + +VPTF  F
Sbjct:   80 FTQINDKSVVYFTATWCPPCKVISPIYTEMSEKHAGVAFGKVDVDDNSDSAVDFEINAVPTFVLF 144          
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: A0A448YUQ9_9STRA (Thioredoxin n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUQ9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 5.490e-17
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
            F +  +K+ LYFTA WCPPC+ I P + ELS++  ++AFGK+DID+  +AA    + SVPTF FF
Sbjct:   15 FTAINEKSILYFTATWCPPCKIIKPVYEELSEKHENIAFGKVDIDDAYDAATEYQITSVPTFVFF 79          
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: A0A7S2VDA5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VDA5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.620e-16
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
            F      + LYFTA WCPPC+ I P + +LS   P+VAFG +DID N +AA    + SVPTF FF
Sbjct:   28 FRKLNSNSVLYFTATWCPPCKMIKPAYNKLSKSYPNVAFGMVDIDENEDAAQQFQIASVPTFFFF 92          
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: B7FP57_PHATC (Thioredoxin o n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FP57_PHATC)

HSP 1 Score: 75.5 bits (184), Expect = 6.210e-16
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
            F +   KT  YFTA WCPPC++I P + E+S +   VAFGKID+D+N +AAV   + +VPTF  F
Sbjct:   42 FKTINSKTVCYFTAVWCPPCKQIKPIYEEMSTKYDGVAFGKIDVDDNADAAVEYEISNVPTFIAF 106          
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: A0A7S0GKG5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKG5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 7.180e-16
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDE-TPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
            F S   K  +YFTA WCPPC+ I P + E++++ +P VAFGKID+D+N++AA   +V SVPTF  F
Sbjct:   47 FKSDNTKGIMYFTANWCPPCKMIKPKYKEMAEKFSPEVAFGKIDVDDNSDAAADYDVSSVPTFVLF 112          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL93_ECTSI1.860e-2873.77Thioredoxin O n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A1E7F829_9STRA6.430e-2053.85Thioredoxin domain-containing protein n=3 Tax=Frag... [more]
X1A998_9ZZZZ1.750e-1853.85Thioredoxin domain-containing protein n=1 Tax=mari... [more]
A0A836CF79_9STRA2.800e-1858.73Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A7S1C0K1_9STRA7.250e-1850.77Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2P9F2_9STRA1.660e-1749.23Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A448YUQ9_9STRA5.490e-1750.77Thioredoxin n=1 Tax=Pseudo-nitzschia multistriata ... [more]
A0A7S2VDA5_9STRA4.620e-1650.77Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
B7FP57_PHATC6.210e-1650.77Thioredoxin o n=2 Tax=Phaeodactylum tricornutum Ta... [more]
A0A7S0GKG5_9STRA7.180e-1651.52Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199013contigH-elongata_contig199013:339..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue2.5e-21
Seed eggNOG ortholog2880.D7FL93
Preferred nametxn
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionthioredoxin O
Ec32 orthologEc-15_004770.1
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930123.3727818-CDS-H-elongata_contig199013:338..5331622930123.3727818-CDS-H-elongata_contig199013:338..533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199013 339..533 -
1691679289.8752017-CDS-H-elongata_contig199013:338..5331691679289.8752017-CDS-H-elongata_contig199013:338..533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199013 339..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199013.5585.1prot_H-elongata_contig199013.5585.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199013 339..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199013.5585.1

>prot_H-elongata_contig199013.5585.1 ID=prot_H-elongata_contig199013.5585.1|Name=mRNA_H-elongata_contig199013.5585.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEA
AVLANVMSVPTFKFF
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mRNA from alignment at H-elongata_contig199013:339..533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199013.5585.1 ID=mRNA_H-elongata_contig199013.5585.1|Name=mRNA_H-elongata_contig199013.5585.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig199013:339..533- (Himanthalia elongata Himel1 dioecious)
TTTGTCTCCCGAAGAGATAAGACCGCCTTGTACTTCACCGCCAAGTGGTG CCCGCCGTGCCGGAGGATAGGGCCGTTCTTCACCGAGCTGAGCGACGAAA CGCCCAGTGTGGCCTTCGGCAAGATCGACATAGACAATAACAACGAGGCG GCCGTGCTTGCCAACGTCATGTCCGTGCCGACCTTCAAGTTTTTT
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Coding sequence (CDS) from alignment at H-elongata_contig199013:339..533-

>mRNA_H-elongata_contig199013.5585.1 ID=mRNA_H-elongata_contig199013.5585.1|Name=mRNA_H-elongata_contig199013.5585.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig199013:339..533- (Himanthalia elongata Himel1 dioecious)
TTTGTCTCCCGAAGAGATAAGACCGCCTTGTACTTCACCGCCAAGTGGTG
CCCGCCGTGCCGGAGGATAGGGCCGTTCTTCACCGAGCTGAGCGACGAAA
CGCCCAGTGTGGCCTTCGGCAAGATCGACATAGACAATAACAACGAGGCG
GCCGTGCTTGCCAACGTCATGTCCGTGCCGACCTTCAAGTTTTTTTTTGT
CTCCCGAAGAGATAAGACCGCCTTGTACTTCACCGCCAAGTGGTGCCCGC
CGTGCCGGAGGATAGGGCCGTTCTTCACCGAGCTGAGCGACGAAACGCCC
AGTGTGGCCTTCGGCAAGATCGACATAGACAATAACAACGAGGCGGCCGT
GCTTGCCAACGTCATGTCCGTGCCGACCTTCAAGTTTTTT
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