mRNA_H-elongata_contig199013.5585.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: D7FL93_ECTSI (Thioredoxin O n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL93_ECTSI) HSP 1 Score: 107 bits (267), Expect = 1.860e-28 Identity = 45/61 (73.77%), Postives = 55/61 (90.16%), Query Frame = 1
Query: 13 RDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
R+K+ LYFTAKWCPPCRRIGPF ELS+ETP+V+FGK+DID+N EAA +A++ SVPTFKFF
Sbjct: 51 REKSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTFKFF 111
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: A0A1E7F829_9STRA (Thioredoxin domain-containing protein n=3 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F829_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 6.430e-20 Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
F+ +K+ LYFTA WCPPC+ I P + LSDE P+++FGKIDID+N ++A+ + SVPTF FF
Sbjct: 48 FIKMNEKSILYFTATWCPPCKLIKPVYESLSDEYPNISFGKIDIDDNQDSAMEYEISSVPTFLFF 112
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: X1A998_9ZZZZ (Thioredoxin domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1A998_9ZZZZ) HSP 1 Score: 81.3 bits (199), Expect = 1.750e-18 Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
F S DK+ LYFTA WCPPC+ I P + ++ E P VAFGK+DID+N EAA + VPTF F
Sbjct: 16 FKSINDKSILYFTATWCPPCKMIKPIYENMAKENPEVAFGKVDIDDNAEAAAKYEISGVPTFILF 80
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: A0A836CF79_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF79_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 2.800e-18 Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 7 SRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
S +DK LYFTAKWCPPCRRI P + +L+ E V F K+DID N AA A +MSVPTF F+
Sbjct: 64 SSKDKAVLYFTAKWCPPCRRIAPMYQDLAAEKSDVHFYKVDIDVNKAAAKDAGIMSVPTFIFY 126
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: A0A7S1C0K1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C0K1_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 7.250e-18 Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1
Query: 1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
F S +K+ LYFTA WCPPC+ I P + ++ E P VAFGK+D+D+N E+A + VPTF FF
Sbjct: 44 FKSINEKSILYFTATWCPPCKMIKPVYENMAKENPDVAFGKVDVDDNAESAAKYKISGVPTFVFF 108
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: A0A7S2P9F2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P9F2_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.660e-17 Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
F DK+ +YFTA WCPPC+ I P +TE+S++ VAFGK+D+D+N+++AV + +VPTF F
Sbjct: 80 FTQINDKSVVYFTATWCPPCKVISPIYTEMSEKHAGVAFGKVDVDDNSDSAVDFEINAVPTFVLF 144
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: A0A448YUQ9_9STRA (Thioredoxin n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUQ9_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 5.490e-17 Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
F + +K+ LYFTA WCPPC+ I P + ELS++ ++AFGK+DID+ +AA + SVPTF FF
Sbjct: 15 FTAINEKSILYFTATWCPPCKIIKPVYEELSEKHENIAFGKVDIDDAYDAATEYQITSVPTFVFF 79
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: A0A7S2VDA5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VDA5_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 4.620e-16 Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
F + LYFTA WCPPC+ I P + +LS P+VAFG +DID N +AA + SVPTF FF
Sbjct: 28 FRKLNSNSVLYFTATWCPPCKMIKPAYNKLSKSYPNVAFGMVDIDENEDAAQQFQIASVPTFFFF 92
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: B7FP57_PHATC (Thioredoxin o n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FP57_PHATC) HSP 1 Score: 75.5 bits (184), Expect = 6.210e-16 Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1
Query: 1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
F + KT YFTA WCPPC++I P + E+S + VAFGKID+D+N +AAV + +VPTF F
Sbjct: 42 FKTINSKTVCYFTAVWCPPCKQIKPIYEEMSTKYDGVAFGKIDVDDNADAAVEYEISNVPTFIAF 106
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Match: A0A7S0GKG5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKG5_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 7.180e-16 Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 1 FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDE-TPSVAFGKIDIDNNNEAAVLANVMSVPTFKFF 195
F S K +YFTA WCPPC+ I P + E++++ +P VAFGKID+D+N++AA +V SVPTF F
Sbjct: 47 FKSDNTKGIMYFTANWCPPCKMIKPKYKEMAEKFSPEVAFGKIDVDDNSDAAADYDVSSVPTFVLF 112 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199013.5585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig199013.5585.1 >prot_H-elongata_contig199013.5585.1 ID=prot_H-elongata_contig199013.5585.1|Name=mRNA_H-elongata_contig199013.5585.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp FVSRRDKTALYFTAKWCPPCRRIGPFFTELSDETPSVAFGKIDIDNNNEAback to top mRNA from alignment at H-elongata_contig199013:339..533- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig199013.5585.1 ID=mRNA_H-elongata_contig199013.5585.1|Name=mRNA_H-elongata_contig199013.5585.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig199013:339..533- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig199013:339..533- >mRNA_H-elongata_contig199013.5585.1 ID=mRNA_H-elongata_contig199013.5585.1|Name=mRNA_H-elongata_contig199013.5585.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig199013:339..533- (Himanthalia elongata Himel1 dioecious)back to top |