mRNA_H-elongata_contig19870.5571.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19870.5571.1 vs. uniprot
Match: D7G0M6_ECTSI (Nucleoporin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M6_ECTSI) HSP 1 Score: 114 bits (285), Expect = 2.910e-27 Identity = 64/112 (57.14%), Postives = 79/112 (70.54%), Query Frame = 1
Query: 1 QMIVTVALVPPRRGVLKETVKHVLAVSTTHEVAILAITY---PDGSGSGRNHRMEVGVWLGCKAIYVRRTSFLAPTNGVAMTKIAGHANGRAFMAGRDGNLYELLYSVEKTF 327
Q+IVTVALVPP++GV + V+HVLAV+TT EV +LA+TY P +GS RN R++V RRT+F A T+GV+M KIA H NGR FMAG+DGNLYEL YSV F
Sbjct: 125 QVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQETGSPRNRRIQV-----------RRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGF 225
BLAST of mRNA_H-elongata_contig19870.5571.1 vs. uniprot
Match: A0A7R9YE90_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE90_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 3.830e-17 Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 1
Query: 1 QMIVTVALVPPRRGVLKETVKHVLAVSTTHEVAILAITYPDGSGSGRNHRMEVGVWLGCKA-IYVRRTSFLAPTNGVAMTKIAGHANGRAFMAGRDGNLYELLYSVEKTF 327
Q+IV+VALVPPR GV +E VK++LAV+T E+ +LA+ + + G+G +G LG + +R TSF ++ V M K+ G +GR FM G DG+LYE LY+ E+ F
Sbjct: 89 QIIVSVALVPPRPGVFREKVKYLLAVATAVEIVLLAVAFEEPEGTG-----VLGQPLGLNGTMTLRPTSFSVSSDNVTMMKLCGTNSGRIFMGGSDGSLYEALYANEEEF 193
BLAST of mRNA_H-elongata_contig19870.5571.1 vs. uniprot
Match: A0A2G5BCU2_COERN (Nucleoporin-domain-containing protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BCU2_COERN) HSP 1 Score: 77.8 bits (190), Expect = 1.930e-14 Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = 1
Query: 1 QMIVTVALVPPRRGVLKETVKHVLAVSTTHEVAILAITYPDGS-GSGRNHRMEVGVWLGCKAIYVRRTSFLAPTNGVAMTKIAGHANGRAFMAGRDGNLYELLYSVE 318
Q+IV+VA+V P+ GV +++KHVL V+T EV +L ++Y G G R EV ++ T P +GVAMT + G A+GR FM+G DG LYE +Y E
Sbjct: 115 QIIVSVAMVKPKPGVFVDSIKHVLVVATPLEVFLLGVSYNIGRLGGARGDGGEVTLYA---------TQISVPADGVAMTSVVGTADGRVFMSGNDGALYEFVYQSE 212
BLAST of mRNA_H-elongata_contig19870.5571.1 vs. uniprot
Match: A0A835YRU3_9STRA (Nup133 N terminal like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU3_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 2.650e-14 Identity = 49/105 (46.67%), Postives = 62/105 (59.05%), Query Frame = 1
Query: 1 QMIVTVALVPPRRGVLKETVKHVLAVSTTHEVAILAITYPDGSGSGRNHRMEVGVWLGCKAIYVRRTSFLAPTNGVAMTKIAGHANGRAFMAGRDGNLYELLYSV 315
Q+IV V L PR+GV K VK++L V+T EV ++A+T DG G GR + VR T F A ++GV M I GH GR FMAG+DGNLYEL+Y
Sbjct: 130 QVIVAVGLAVPRQGVFKPLVKYLLVVATPVEVVLVAVT--DG-GDGR--------------LDVRPTQFSASSDGVNMNAIRGHPCGRIFMAGKDGNLYELIYEA 217
BLAST of mRNA_H-elongata_contig19870.5571.1 vs. uniprot
Match: A0A261XXE4_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XXE4_9FUNG) HSP 1 Score: 77.0 bits (188), Expect = 3.590e-14 Identity = 42/109 (38.53%), Postives = 70/109 (64.22%), Query Frame = 1
Query: 1 QMIVTVALVPPRRGVLKETVKHVLAVSTTHEVAILAITYPDGSGSGRNHRMEVGVWLGCKAIYVRRTSFLAPTNGVAMTKIAGHANGRAFMAGRDGNLYELLYSVEKTF 327
Q+IV+V LVPP+R V + +++VL ++TT E+ +L ++ D SG+ ++R + +++V + S P++ V+MT I G A+GR FM G DG+LYE+ Y +TF
Sbjct: 123 QIIVSVGLVPPKRDVFVDGIEYVLVIATTLEIILLGVSTTDPSGAPSSYRGQK------LSLFVTQLS--VPSDDVSMTNIVGTADGRIFMCGDDGHLYEVTYKAAETF 223
BLAST of mRNA_H-elongata_contig19870.5571.1 vs. uniprot
Match: A0A437AZ50_CHISP (Uncharacterized protein n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A437AZ50_CHISP) HSP 1 Score: 73.9 bits (180), Expect = 4.340e-13 Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = 1
Query: 1 QMIVTVALVPPRRGVLKETVKHVLAVSTTHEVAILAITYPDGSGSGRNHRMEVGVWLGCKAIYVRRTSFLAPTNGVAMTKIAGHANGRAFMAGRDGNLYELLYSVE 318
+ IV+V LV P+ GV + VK++L ++TT E+ +L +T+ G + E+ + V F+ PT+G++M + ANGR FM G+DG LYE+ Y +
Sbjct: 124 ETIVSVGLVKPKAGVFQSFVKYLLVLTTTVEIVVLGVTFSSSKTDGSSELQEI--------LLVPEPVFVLPTDGISMMSVKSTANGRIFMGGKDGCLYEITYQAQ 221
BLAST of mRNA_H-elongata_contig19870.5571.1 vs. uniprot
Match: A0A6A5C0M1_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5C0M1_NAEFO) HSP 1 Score: 71.6 bits (174), Expect = 2.800e-12 Identity = 45/116 (38.79%), Postives = 69/116 (59.48%), Query Frame = 1
Query: 1 QMIVTVALVPPRRGVLKETVKHVLAVSTTHEVAILAITYPDG---SGSGRNHRMEVGVWLGCK--AIYVRR----TSFLAPTNGVAMTKIAGHANGRAFMAGRDGNLYELLYSVEK 321
Q+I++ LV P+ GV K+ VK++L ++T EVA++A+T+ + S SG H + + + AIY T+++ P++ V M KI G NGR FM G+DG LYEL Y E+
Sbjct: 135 QVIISAGLVKPKPGVFKDYVKYLLVLATPVEVALVALTFNNNNVASPSGAAHLDQQHLTFDSQTGAIYSEMELFATNYIIPSDNVNMIKIVGTQNGRIFMCGKDGCLYELTYEPEE 250
BLAST of mRNA_H-elongata_contig19870.5571.1 vs. uniprot
Match: UPI00200EB858 (LOW QUALITY PROTEIN: nuclear pore complex protein Nup154 n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200EB858) HSP 1 Score: 70.5 bits (171), Expect = 7.140e-12 Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 1 QMIVTVALVPPRRGVLKETVKHVLAVSTTHEVAILAITYPDGSGSGRNHRMEVGVWLGCKAIYVRRTSFLAPTNGVAMTKIAGHANGRAFMAGRDGNLYELLYSVE 318
+ IV+V L+ P+ GV + VK++L ++TT E+ +L +T+ G N + V F+ PT+GV+M + ANGR FM G+DG LYE+ Y +
Sbjct: 142 ETIVSVGLIKPKPGVFQNFVKYLLVLTTTVEIVVLGVTFSSSKNEGDNFE---------EMHLVPEPVFVLPTDGVSMMSVKSTANGRIFMGGKDGCLYEITYQAQ 238
BLAST of mRNA_H-elongata_contig19870.5571.1 vs. uniprot
Match: A0A7S3M7K2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7K2_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 7.190e-12 Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 1
Query: 1 QMIVTVALVPPRRGVLKETVKHVLAVSTTHEVAILAITYPDGSGSGRNHRMEVGVWLGCKAIYVRRTSFLAPTNGVAMTKIAGHANGRAFMAGRDGNLYELLYS 312
++IV+VAL P+ GV +TVK+VL V++ EV +LA+T + G N ++ T++ P++ VAM K+ G +GR FMAG DGN+YEL YS
Sbjct: 133 EVIVSVALSAPKPGVFLDTVKYVLVVASPVEVVLLAVTCDE---QGNNFKLVP-------------TAYTMPSDNVAMVKVVGSQSGRIFMAGNDGNVYELDYS 220
BLAST of mRNA_H-elongata_contig19870.5571.1 vs. uniprot
Match: UPI0008F9906E (nuclear pore complex protein Nup155 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9906E) HSP 1 Score: 69.7 bits (169), Expect = 1.330e-11 Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 1 QMIVTVALVPPRRGVLKETVKHVLAVSTTHEVAILAITYPDGSGSGRNHRMEVGVWLGCKAIYVRRTSFLAPTNGVAMTKIAGHANGRAFMAGRDGNLYELLYSVE 318
+ I+ V LV P+ V KE + H+L ++TT ++ +L +T + S N E+ + F PT+GV +T IAG ANGR F+ G DGNLYE+ Y E
Sbjct: 136 ETIMCVGLVKPKPNVFKEFITHLLVLATTVDIVVLGVTLSVPTDSVSNLINEIH--------FTPEVVFQLPTDGVNITAIAGSANGRIFLGGEDGNLYEIQYRKE 233 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19870.5571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19870.5571.1 >prot_H-elongata_contig19870.5571.1 ID=prot_H-elongata_contig19870.5571.1|Name=mRNA_H-elongata_contig19870.5571.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp MIVTVALVPPRRGVLKETVKHVLAVSTTHEVAILAITYPDGSGSGRNHRMback to top mRNA from alignment at H-elongata_contig19870:5482..6476+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19870.5571.1 ID=mRNA_H-elongata_contig19870.5571.1|Name=mRNA_H-elongata_contig19870.5571.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=995bp|location=Sequence derived from alignment at H-elongata_contig19870:5482..6476+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19870:5482..6476+ >mRNA_H-elongata_contig19870.5571.1 ID=mRNA_H-elongata_contig19870.5571.1|Name=mRNA_H-elongata_contig19870.5571.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig19870:5482..6476+ (Himanthalia elongata Himel1 dioecious)back to top |