mRNA_H-elongata_contig198624.5567.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198624.5567.1
Unique NamemRNA_H-elongata_contig198624.5567.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198624.5567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198624contigH-elongata_contig198624:44..1078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1035
Cds size1035
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930121.3200383-CDS-H-elongata_contig198624:43..10781622930121.3200383-CDS-H-elongata_contig198624:43..1078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198624 44..1078 +
1691679288.9200366-CDS-H-elongata_contig198624:43..10781691679288.9200366-CDS-H-elongata_contig198624:43..1078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198624 44..1078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198624.5567.1prot_H-elongata_contig198624.5567.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198624 44..1078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198624.5567.1

>prot_H-elongata_contig198624.5567.1 ID=prot_H-elongata_contig198624.5567.1|Name=mRNA_H-elongata_contig198624.5567.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=345bp
MLLKFVEPNWVFEGSESLVDDSARLKLDALGLWAEELAQDAVKTIGARRV
TQDGGDMTGLTWDWLRKGLLRSTKVNGRYMRIPEIAGMAVALGCLVPYRN
LFTSGMFLVSPDAAYIHLVHNTFTEWSKSYPDMSLTRWKTRFPGFSTSVP
KHNHFEYVNLDDSPGSRSVVLGPIEVKINDRMRMFKEETDDAVQTVTRIT
PTPISAPLYDTTGVGDIPENGMGGAGSGDTGMTPPGLVGTGAGSGDVKSL
RICQGIVGRTGARCTYRAKPGSSRCGRHPLPTGMLECTEEEDYADAPSGR
ADLTGPGSGPTKSTNVGTYMKGHIALEKEPDYQRCYRAVWRMGHT
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mRNA from alignment at H-elongata_contig198624:44..1078+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198624.5567.1 ID=mRNA_H-elongata_contig198624.5567.1|Name=mRNA_H-elongata_contig198624.5567.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1035bp|location=Sequence derived from alignment at H-elongata_contig198624:44..1078+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCTCAAATTTGTTGAACCGAACTGGGTCTTCGAAGGAAGCGAAAG
TCTTGTGGATGATTCGGCAAGACTAAAGCTAGACGCGCTTGGTCTTTGGG
CCGAGGAGTTAGCGCAAGATGCGGTGAAGACTATTGGTGCTCGTAGAGTG
ACTCAAGATGGCGGTGATATGACTGGCCTAACCTGGGATTGGCTCCGAAA
AGGCTTGCTACGTTCGACCAAAGTCAATGGGAGATACATGCGAATACCCG
AAATCGCTGGGATGGCTGTTGCACTGGGATGTCTGGTCCCGTATCGCAAC
TTATTCACCAGCGGAATGTTCTTGGTCTCCCCGGATGCGGCGTACATTCA
CCTTGTACACAATACGTTTACAGAGTGGTCCAAATCCTACCCTGATATGT
CCCTAACTCGTTGGAAAACAAGATTTCCAGGCTTCAGTACCTCGGTTCCT
AAACATAATCATTTTGAATATGTGAACTTAGACGACTCACCCGGCTCTCG
GTCGGTAGTTTTAGGGCCAATCGAGGTGAAAATCAACGATCGGATGCGTA
TGTTCAAGGAAGAGACTGACGACGCCGTGCAGACTGTAACCAGGATCACA
CCAACCCCGATCTCGGCGCCGCTGTACGACACCACGGGAGTGGGGGACAT
TCCTGAAAATGGGATGGGCGGTGCTGGATCGGGGGACACTGGTATGACCC
CGCCGGGTCTGGTTGGCACCGGAGCCGGGTCGGGCGACGTCAAATCCTTG
AGGATATGCCAGGGCATCGTTGGGAGGACAGGCGCTAGGTGCACATATCG
CGCGAAACCTGGAAGTTCAAGATGCGGGCGCCACCCGCTGCCGACGGGGA
TGCTGGAGTGTACGGAGGAGGAAGACTACGCGGACGCCCCTAGTGGTCGG
GCTGACCTGACAGGTCCGGGTTCGGGGCCAACCAAGTCGACCAACGTAGG
AACCTACATGAAGGGTCATATTGCGTTGGAGAAAGAGCCGGATTACCAAA
GGTGCTACAGGGCCGTCTGGCGAATGGGTCATACC
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Coding sequence (CDS) from alignment at H-elongata_contig198624:44..1078+

>mRNA_H-elongata_contig198624.5567.1 ID=mRNA_H-elongata_contig198624.5567.1|Name=mRNA_H-elongata_contig198624.5567.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2070bp|location=Sequence derived from alignment at H-elongata_contig198624:44..1078+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCTCAAATTTGTTGAACCGAACTGGGTCTTCGAAGGAAGCGAAAG
TCTTGTGGATGATTCGGCAAGACTAAAGCTAGACGCGCTTGGTCTTTGGG
CCGAGGAGTTAGCGCAAGATGCGGTGAAGACTATTGGTGCTCGTAGAGTG
ACTCAAGATGGCGGTGATATGACTGGCCTAACCTGGGATTGGCTCCGAAA
AGGCTTGCTACGTTCGACCAAAGTCAATGGGAGATACATGCGAATACCCG
AAATCGCTGGGATGGCTGTTGCACTGGGATGTCTGGTCCCGTATCGCAAC
TTATTCACCAGCGGAATGTTCTTGGTCTCCCCGGATGCGGCGTACATTCA
CCTTGTACACAATACGTTTACAGAGTGGTCCAAATCCTACCCTGATATGT
CCCTAACTCGTTGGAAAACAAGATTTCCAGGCTTCAGTACCTCGGTTCCT
AAACATAATCATTTTGAATATGTGAACTTAGACGACTCACCCGGCTCTCG
GTCGGTAGTTTTAGGGCCAATCGAGGTGAAAATCAACGATCGGATGCGTA
TGTTCAAGGAAGAGACTGACGACGCCGTGCAGACTGTAACCAGGATCACA
CCAACCCCGATCTCGGCGCCGCTGTACGACACCACGGGAGTGGGGGACAT
TCCTGAAAATGGGATGGGCGGTGCTGGATCGGGGGACACTGGTATGACCC
CGCCGGGTCTGGTTGGCACCGGAGCCGGGTCGGGCGACGTCAAATCCTTG
AGGATATGCCAGGGCATCGTTGGGAGGACAGGCGCTAGGTGCACATATCG
CGCGAAACCTGGAAGTTCAAGATGCGGGCGCCACCCGCTGCCGACGGGGA
TGCTGGAGTGTACGGAGGAGGAAGACTACGCGGACGCCCCTAGTGGTCGG
GCTGACCTGACAGGTCCGGGTTCGGGGCCAACCAAGTCGACCAACGTAGG
AACCTACATGAAGGGTCATATTGCGTTGGAGAAAGAGCCGGATTACCAAA
GGTGCTACAGGGCCGTCTGGCGAATGGGTCATACCATGCTTCTCAAATTT
GTTGAACCGAACTGGGTCTTCGAAGGAAGCGAAAGTCTTGTGGATGATTC
GGCAAGACTAAAGCTAGACGCGCTTGGTCTTTGGGCCGAGGAGTTAGCGC
AAGATGCGGTGAAGACTATTGGTGCTCGTAGAGTGACTCAAGATGGCGGT
GATATGACTGGCCTAACCTGGGATTGGCTCCGAAAAGGCTTGCTACGTTC
GACCAAAGTCAATGGGAGATACATGCGAATACCCGAAATCGCTGGGATGG
CTGTTGCACTGGGATGTCTGGTCCCGTATCGCAACTTATTCACCAGCGGA
ATGTTCTTGGTCTCCCCGGATGCGGCGTACATTCACCTTGTACACAATAC
GTTTACAGAGTGGTCCAAATCCTACCCTGATATGTCCCTAACTCGTTGGA
AAACAAGATTTCCAGGCTTCAGTACCTCGGTTCCTAAACATAATCATTTT
GAATATGTGAACTTAGACGACTCACCCGGCTCTCGGTCGGTAGTTTTAGG
GCCAATCGAGGTGAAAATCAACGATCGGATGCGTATGTTCAAGGAAGAGA
CTGACGACGCCGTGCAGACTGTAACCAGGATCACACCAACCCCGATCTCG
GCGCCGCTGTACGACACCACGGGAGTGGGGGACATTCCTGAAAATGGGAT
GGGCGGTGCTGGATCGGGGGACACTGGTATGACCCCGCCGGGTCTGGTTG
GCACCGGAGCCGGGTCGGGCGACGTCAAATCCTTGAGGATATGCCAGGGC
ATCGTTGGGAGGACAGGCGCTAGGTGCACATATCGCGCGAAACCTGGAAG
TTCAAGATGCGGGCGCCACCCGCTGCCGACGGGGATGCTGGAGTGTACGG
AGGAGGAAGACTACGCGGACGCCCCTAGTGGTCGGGCTGACCTGACAGGT
CCGGGTTCGGGGCCAACCAAGTCGACCAACGTAGGAACCTACATGAAGGG
TCATATTGCGTTGGAGAAAGAGCCGGATTACCAAAGGTGCTACAGGGCCG
TCTGGCGAATGGGTCATACC
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