mRNA_H-elongata_contig19857.5566.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19857.5566.1
Unique NamemRNA_H-elongata_contig19857.5566.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig19857.5566.1 vs. uniprot
Match: D7FIR4_ECTSI (Nucleolar GTP-binding protein 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR4_ECTSI)

HSP 1 Score: 427 bits (1097), Expect = 3.240e-144
Identity = 213/219 (97.26%), Postives = 215/219 (98.17%), Query Frame = 1 
Query:    1 MVVYNFKKMAPVPPAEDFVDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGGIIADFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQV 657
            MVVYNFKKMA VPPAED +DIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLG II DFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKL+EALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQV
Sbjct:    1 MVVYNFKKMASVPPAEDLIDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGAIIGDFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLVEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQV 219
[Close]
BLAST of mRNA_H-elongata_contig19857.5566.1 vs. uniprot
Match: A0A836CDN0_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDN0_9STRA)

HSP 1 Score: 411 bits (1057), Expect = 3.900e-138
Identity = 203/219 (92.69%), Postives = 212/219 (96.80%), Query Frame = 1 
Query:    1 MVVYNFKKMAPVPPAEDFVDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGGIIADFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQV 657
            MVVYNFKKMAPVP A+DF+DI+LTRTQRKTPTV+HPGY I+RIR FYMRKVKFTQET+SERLG II DFPRLDDIHPFYADLLNILYDRDHYKLALGQ+NMAKKL+EALSRDYVRLLKYGDSLYRCKQLKRAALGRM TLLKRQKASLSYLEEVR+HLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRA VDVQPYAFTTKSLYVGHMDYRYLRWQV
Sbjct:    1 MVVYNFKKMAPVPAADDFIDIVLTRTQRKTPTVVHPGYNINRIRQFYMRKVKFTQETLSERLGQIIMDFPRLDDIHPFYADLLNILYDRDHYKLALGQINMAKKLMEALSRDYVRLLKYGDSLYRCKQLKRAALGRMMTLLKRQKASLSYLEEVRKHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRANVDVQPYAFTTKSLYVGHMDYRYLRWQV 219
[Close]
BLAST of mRNA_H-elongata_contig19857.5566.1 vs. uniprot
Match: K0SBV3_THAOC (OBG-type G domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBV3_THAOC)

HSP 1 Score: 371 bits (952), Expect = 1.770e-128
Identity = 176/219 (80.37%), Postives = 202/219 (92.24%), Query Frame = 1 
Query:    1 MVVYNFKKMAPVPPAEDFVDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGGIIADFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQV 657
            M  YNFK+MAPVP A D VDI+LTRTQR+TPTV+HPGYKISRIRSFYMRK+KFTQ+TISERL  +++DFPRL DIHPFY+DL N LYDRDHYKLALGQ+N AK+L++A++RD VR++KYGDSLYRCK LKRAALGRMCT+LKRQKASLSYLEEVR+H++RLPALDPNTRTLL+ G PNVGKSSFMNK+TRA VDVQPYAFTTKSL+VGH DY+YLRWQV
Sbjct:    1 MPTYNFKQMAPVPSANDLVDIVLTRTQRRTPTVVHPGYKISRIRSFYMRKIKFTQQTISERLTAMLSDFPRLSDIHPFYSDLCNTLYDRDHYKLALGQINTAKQLVDAVARDMVRMVKYGDSLYRCKCLKRAALGRMCTILKRQKASLSYLEEVRKHMSRLPALDPNTRTLLMCGLPNVGKSSFMNKITRANVDVQPYAFTTKSLFVGHTDYKYLRWQV 219
[Close]
BLAST of mRNA_H-elongata_contig19857.5566.1 vs. uniprot
Match: A0A6V1RDW6_HETAK (Nucleolar GTP-binding protein 1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RDW6_HETAK)

HSP 1 Score: 385 bits (989), Expect = 3.150e-128
Identity = 186/219 (84.93%), Postives = 205/219 (93.61%), Query Frame = 1 
Query:    1 MVVYNFKKMAPVPPAEDFVDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGGIIADFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQV 657
            MVVYNFKK+ P+P A DFVDIIL++TQRKTPTV+HP Y I RIR+FYMRKVKFTQ+ ISERLG +IADFPRLDDIHPFYADL+NILYDRDHYKLALGQ+N AK LIE LSRDYVRL+KYGDSLYRCKQLKRAA+GRM T+LK+QKA+LSYL+EVR+HL RLPALDPNTRTLL+TG+PNVGKSSFMNKVTRA VDVQPYAFTTKSLYVGHMDYRYLRWQV
Sbjct:    1 MVVYNFKKIQPIPGAGDFVDIILSKTQRKTPTVVHPQYSIQRIRAFYMRKVKFTQQNISERLGQVIADFPRLDDIHPFYADLINILYDRDHYKLALGQLNTAKNLIEVLSRDYVRLMKYGDSLYRCKQLKRAAMGRMMTILKKQKAALSYLDEVRKHLGRLPALDPNTRTLLVTGYPNVGKSSFMNKVTRANVDVQPYAFTTKSLYVGHMDYRYLRWQV 219
[Close]
BLAST of mRNA_H-elongata_contig19857.5566.1 vs. uniprot
Match: A0A7S1UHB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHB4_9STRA)

HSP 1 Score: 378 bits (971), Expect = 3.530e-126
Identity = 181/219 (82.65%), Postives = 204/219 (93.15%), Query Frame = 1 
Query:    1 MVVYNFKKMAPVPPAEDFVDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGGIIADFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQV 657
            MVVYNFKKMAPVP  ED VDI+L+RTQR+TPTVI PG+ I+RIR FYMRKVKFTQ+T  ERLG IIADFPRLDDIHPFYADL+N+LYDRDHYKLALGQ+N AK +I A++RDYV+LLKYGDSLYRCKQLKRAALGRMCT+LK+ KASL+YLEEVR+HL+RLPALDPNTRTL+ TG+PNVGKSSF+NKVTRA VDVQPYAFTTK+L+VGHMDYRYLRWQV
Sbjct:    8 MVVYNFKKMAPVPTGEDLVDIVLSRTQRQTPTVIRPGFNINRIRGFYMRKVKFTQQTAEERLGQIIADFPRLDDIHPFYADLMNVLYDRDHYKLALGQLNTAKTIIGAVARDYVKLLKYGDSLYRCKQLKRAALGRMCTVLKKHKASLAYLEEVRKHLSRLPALDPNTRTLICTGYPNVGKSSFLNKVTRANVDVQPYAFTTKALFVGHMDYRYLRWQV 226
[Close]
BLAST of mRNA_H-elongata_contig19857.5566.1 vs. uniprot
Match: A0A7S2BZF7_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BZF7_9STRA)

HSP 1 Score: 377 bits (967), Expect = 6.460e-125
Identity = 175/216 (81.02%), Postives = 206/216 (95.37%), Query Frame = 1 
Query:   10 YNFKKMAPVPPAEDFVDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGGIIADFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQV 657
            YNFK +APVPPA+ F+DI+LTRTQR+TPTV+HPGY I+RIR+FYMRKVK+TQ+T SERLG I+  FPRLDDIHPFYADL+NILYDRDHYKLALGQ+N++K+LI+ L+RDYVRL+KYGDSLYRCKQLKRAA+GRM T+LKRQKASLSYLEEVR+HL+RLP++DPNTRTL++ G+PNVGKSSFMNKVTRA+V+VQPYAFTTKSL+VGHMDYRYLRWQV
Sbjct:    6 YNFKSIAPVPPADQFIDIVLTRTQRRTPTVVHPGYAINRIRAFYMRKVKYTQQTASERLGEILTSFPRLDDIHPFYADLMNILYDRDHYKLALGQINISKRLIDTLARDYVRLIKYGDSLYRCKQLKRAAMGRMMTILKRQKASLSYLEEVRKHLSRLPSIDPNTRTLIVCGYPNVGKSSFMNKVTRADVEVQPYAFTTKSLFVGHMDYRYLRWQV 221
[Close]
BLAST of mRNA_H-elongata_contig19857.5566.1 vs. uniprot
Match: A0A7S3MAG3_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAG3_9STRA)

HSP 1 Score: 377 bits (968), Expect = 9.410e-125
Identity = 178/219 (81.28%), Postives = 206/219 (94.06%), Query Frame = 1 
Query:    1 MVVYNFKKMAPVPPAEDFVDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGGIIADFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQV 657
            MVVYNFKK+AP+P A + +DI+LTRTQRKTPTVIHPGYKI+RIR+FYMRKVKFTQ+TI E+LG  + DFPRLDDIHPFYADL+NILYDRDH+KLALGQ+N AK LI  L++DY+RLLKYGDSLYRCKQLKRAALGRMCT+LK+ KASL YLEEVR+H++RLPALDPNTRTLLLTG+PNVGKSSFMNKVTRA+V+VQPYAFTTK+L+VGHMD+R+LRWQV
Sbjct:   20 MVVYNFKKIAPIPSASEMIDIVLTRTQRKTPTVIHPGYKITRIRNFYMRKVKFTQQTIGEKLGATLQDFPRLDDIHPFYADLMNILYDRDHFKLALGQVNTAKNLIAGLAKDYLRLLKYGDSLYRCKQLKRAALGRMCTVLKKLKASLGYLEEVRKHISRLPALDPNTRTLLLTGYPNVGKSSFMNKVTRADVEVQPYAFTTKALFVGHMDHRFLRWQV 238
[Close]
BLAST of mRNA_H-elongata_contig19857.5566.1 vs. uniprot
Match: M4C649_HYAAE (Nucleolar GTP-binding protein 1 n=21 Tax=Peronosporaceae TaxID=4777 RepID=M4C649_HYAAE)

HSP 1 Score: 375 bits (963), Expect = 3.610e-124
Identity = 178/219 (81.28%), Postives = 204/219 (93.15%), Query Frame = 1 
Query:    1 MVVYNFKKMAPVPPAEDFVDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGGIIADFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQV 657
            MVVYNFKK+  VP A DF+DI+LTRTQRKTPTVIHP Y ISRIR+FYMRKVKFTQ+T  E+L  II DFPRLDD+HPFYADL+NILYDRDHYKLALGQ+N A+ LI+ +++DYVR++KYGDSLYRCKQLKRAALGRMCTLLK+QKASL YLEEVR+HL+RLP++DPNTRTLL+TGFPNVGKSSFMNKVTRA+VDVQPYAFTTK+LYVGH+DY+YLRWQV
Sbjct:    1 MVVYNFKKIQTVPTANDFIDIVLTRTQRKTPTVIHPTYAISRIRAFYMRKVKFTQQTCQEKLSQIIDDFPRLDDLHPFYADLINILYDRDHYKLALGQVNTARALIDNIAKDYVRMIKYGDSLYRCKQLKRAALGRMCTLLKKQKASLEYLEEVRKHLSRLPSIDPNTRTLLITGFPNVGKSSFMNKVTRADVDVQPYAFTTKALYVGHLDYKYLRWQV 219
[Close]
BLAST of mRNA_H-elongata_contig19857.5566.1 vs. uniprot
Match: K3WEI8_GLOUD (Nucleolar GTP-binding protein 1 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WEI8_GLOUD)

HSP 1 Score: 375 bits (962), Expect = 4.960e-124
Identity = 178/219 (81.28%), Postives = 204/219 (93.15%), Query Frame = 1 
Query:    1 MVVYNFKKMAPVPPAEDFVDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGGIIADFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQV 657
            MVVYNFKK+  VP A DF+DI+LTRTQRKTPTVIHP Y ISRIR+FYMRKVKFTQ+T  E+L  II DFPRLDD+HPFYADL+NILYDRDHYKLALGQ+N A+ LI+ +++DYVR++KYGDSLYRCKQLKRAALGRMCTLLK+QKASL YLEEVR+HL+RLP++DPNTRTLL+TGFPNVGKSSFMNKVTRA+VDVQPYAFTTK+LYVGH+DY+YLRWQV
Sbjct:    1 MVVYNFKKIQTVPSASDFIDIVLTRTQRKTPTVIHPTYAISRIRAFYMRKVKFTQQTCQEKLSQIIDDFPRLDDLHPFYADLINILYDRDHYKLALGQVNTARALIDNIAKDYVRMIKYGDSLYRCKQLKRAALGRMCTLLKKQKASLEYLEEVRKHLSRLPSIDPNTRTLLVTGFPNVGKSSFMNKVTRADVDVQPYAFTTKALYVGHLDYKYLRWQV 219
[Close]
BLAST of mRNA_H-elongata_contig19857.5566.1 vs. uniprot
Match: A0A2D4CHV4_PYTIN (Nucleolar GTP-binding protein 1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHV4_PYTIN)

HSP 1 Score: 369 bits (948), Expect = 9.860e-124
Identity = 174/219 (79.45%), Postives = 203/219 (92.69%), Query Frame = 1 
Query:    1 MVVYNFKKMAPVPPAEDFVDIILTRTQRKTPTVIHPGYKISRIRSFYMRKVKFTQETISERLGGIIADFPRLDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSYLEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAFTTKSLYVGHMDYRYLRWQV 657
            MVVY FKK+ PVPPA +F+DI+LTRTQRKTPTVIHP Y ISRIR+ YMRKVKFTQ+T  ERL  II DFPRLDD+HPFYA+L+NILYDR+HYKLALGQ+N A+ LI+ +++DYV ++KYGD+LYRCKQLKRAALGRMCTLLK+QKASL YLEEVR+HL+RLP++DPNTRTLL+TGFPNVGKSSFMNKVTRA+VDVQPYAFTTK+LYVGH+DY+YLRWQV
Sbjct:    1 MVVYKFKKIVPVPPATEFIDIVLTRTQRKTPTVIHPTYAISRIRAIYMRKVKFTQQTCQERLSQIIDDFPRLDDLHPFYAELINILYDRNHYKLALGQINTARALIDNIAKDYVHMIKYGDTLYRCKQLKRAALGRMCTLLKKQKASLEYLEEVRKHLSRLPSIDPNTRTLLVTGFPNVGKSSFMNKVTRADVDVQPYAFTTKALYVGHLDYKYLRWQV 219
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19857.5566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIR4_ECTSI3.240e-14497.26Nucleolar GTP-binding protein 1 n=2 Tax=Ectocarpus... [more]
A0A836CDN0_9STRA3.900e-13892.69Nucleolar GTP-binding protein 1 n=1 Tax=Tribonema ... [more]
K0SBV3_THAOC1.770e-12880.37OBG-type G domain-containing protein n=1 Tax=Thala... [more]
A0A6V1RDW6_HETAK3.150e-12884.93Nucleolar GTP-binding protein 1 n=1 Tax=Heterosigm... [more]
A0A7S1UHB4_9STRA3.530e-12682.65Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2BZF7_9STRA6.460e-12581.02Nucleolar GTP-binding protein 1 n=1 Tax=Dictyocha ... [more]
A0A7S3MAG3_9STRA9.410e-12581.28Nucleolar GTP-binding protein 1 n=1 Tax=Spumella e... [more]
M4C649_HYAAE3.610e-12481.28Nucleolar GTP-binding protein 1 n=21 Tax=Peronospo... [more]
K3WEI8_GLOUD4.960e-12481.28Nucleolar GTP-binding protein 1 n=2 Tax=Pythiaceae... [more]
A0A2D4CHV4_PYTIN9.860e-12479.45Nucleolar GTP-binding protein 1 n=1 Tax=Pythium in... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19857contigH-elongata_contig19857:79..4801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score429.9
Seed ortholog evalue7.6e-118
Seed eggNOG ortholog2880.D7FIR4
KEGG koko:K06943,ko:K11269,ko:K19307
KEGG Pathwayko03008,map03008
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0017076,GO:0019001,GO:0022613,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363
EggNOG free text desc.negative regulation of collagen binding
EggNOG OGsCOG1084@1,KOG1490@2759
EC2.1.1.313
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03036
Hectar predicted targeting categoryother localisation
Exons5
Model size687
Cds size687
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19857.5566.1prot_H-elongata_contig19857.5566.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19857 79..4801 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930121.208159-CDS-H-elongata_contig19857:78..2041622930121.208159-CDS-H-elongata_contig19857:78..204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19857 79..204 -
1691679288.8564653-CDS-H-elongata_contig19857:78..2041691679288.8564653-CDS-H-elongata_contig19857:78..204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19857 79..204 -
1622930121.231241-CDS-H-elongata_contig19857:1277..14801622930121.231241-CDS-H-elongata_contig19857:1277..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19857 1278..1480 -
1691679288.8697107-CDS-H-elongata_contig19857:1277..14801691679288.8697107-CDS-H-elongata_contig19857:1277..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19857 1278..1480 -
1622930121.2432868-CDS-H-elongata_contig19857:2400..25391622930121.2432868-CDS-H-elongata_contig19857:2400..2539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19857 2401..2539 -
1691679288.8866801-CDS-H-elongata_contig19857:2400..25391691679288.8866801-CDS-H-elongata_contig19857:2400..2539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19857 2401..2539 -
1622930121.2582695-CDS-H-elongata_contig19857:3299..34371622930121.2582695-CDS-H-elongata_contig19857:3299..3437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19857 3300..3437 -
1691679288.8947017-CDS-H-elongata_contig19857:3299..34371691679288.8947017-CDS-H-elongata_contig19857:3299..3437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19857 3300..3437 -
1622930121.2786515-CDS-H-elongata_contig19857:4720..48011622930121.2786515-CDS-H-elongata_contig19857:4720..4801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19857 4721..4801 -
1691679288.9028652-CDS-H-elongata_contig19857:4720..48011691679288.9028652-CDS-H-elongata_contig19857:4720..4801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19857 4721..4801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19857.5566.1

>prot_H-elongata_contig19857.5566.1 ID=prot_H-elongata_contig19857.5566.1|Name=mRNA_H-elongata_contig19857.5566.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
MVVYNFKKMAPVPPAEDFVDIILTRTQRKTPTVIHPGYKISRIRSFYMRK
VKFTQETISERLGGIIADFPRLDDIHPFYADLLNILYDRDHYKLALGQMN
MAKKLIEALSRDYVRLLKYGDSLYRCKQLKRAALGRMCTLLKRQKASLSY
LEEVRRHLARLPALDPNTRTLLLTGFPNVGKSSFMNKVTRAEVDVQPYAF
TTKSLYVGHMDYRYLRWQVRSEEIYTFL*
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mRNA from alignment at H-elongata_contig19857:79..4801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19857.5566.1 ID=mRNA_H-elongata_contig19857.5566.1|Name=mRNA_H-elongata_contig19857.5566.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4723bp|location=Sequence derived from alignment at H-elongata_contig19857:79..4801- (Himanthalia elongata Himel1 dioecious)
ATGGTGGTTTACAACTTCAAGAAGATGGCGCCGGTGCCCCCCGCGGAAGA
CTTCGTGGACATCATTCTAACGCGTACTCAGGTGCGCGCTATCACCGTTT
GTACCATCTCTGTGTTGCGGTTTCTTGTGCTAGTCATTTGTACTCTCAAG
ATATAATAAATGTGATATACACACATATATATATATATTATGTATATTAT
GTATATATTATGTATATATTATGTATATTTTTATTTAAAAGACTTTAGCG
TTCTACTTGCCAAACTGAAGAGATAAAAGACCCATGTCGACCATCGACCT
ATCAAATACCAGTACGAAGGCCTAGCGGGTCACGTCTTTTTATCCCTCTC
TTTGACATAGCCCGCTTGAGTCTAATGGGTTGTAGATATGGTGCTTTTGA
TGGGGGCAGTGCAGGGAACGGAACGAACAACCGTGTCGCGCTTAAATAAA
CCCTGGGTTGGCACCGCCACTGAATGGAACTCCCTTGGAGAAGCAGCGTG
CAGTACGCACAGGCGATTTGGGTCGAAGTTCGTACATCTGCTGAGTGGGG
CGGAACTGGAATTAAACCCCGCGGCGTGGGCCCGGTTGGCACAAGCAAGC
GATGGGTTTCCGCCCGATTCCGAAAGAGGCGTTTTTTTTTGCGCAAGTGT
GCAAATTGTTAGATACTAGAAGGGGCAAGATAGGTAAATAGTTTGTCGCA
CACTTTGGGGTGAATGTCAGTGCTCGATTATATATTTTTTGGTTTTCCGT
TTGTAGGAAGATAAAAGTGACATATTATAGGGTTTCCACGTGTCACAAAC
AACGCACGAAAAACATACAGTAAAGTAAACACTTTTTAGCACACGTGGAA
ACCCTATATTTCTGGCAACTTGCGGTGCAGCTTGAGATGTTTACGTGTTT
CTTTTTACATAAAAAACAGGGCGGATAGATGCATTACCTCCGCCGTTGTG
TTTTCCTCAAACAAAAAACATGAACTCAATCCAACCCTCCGAACATCAAC
GCCTTCTTAGCACCGTGACGGAGTGCAGCCTCTGTGTGTGTGTGTGTGTT
TTTTAATCCAAATTATAACTGATGTTGCTATATCAGTGCTGCTAGTATGC
CGATCTCGGTGACTCTATACAAAATAGACGTAAGAACAAAACGTGCGCAA
CGTTGCGGTATAGAGTCTTGTGTAGAATTGGTGTCACGTGGAACATTGAT
GAGCCCCGTCGACAGAAGAGCTACTAGAACCCCCCCCCCTCGTATGGTGA
AATTAATGTTATACTACGAAACCCGCAATCAAAGACTGGTGTCGTAAAGC
CCCGCGATTTAGTTTTACCCCCGTTCTTCTCCCCGCCTCCACACTGTCGG
TCGATCTTCGCCAGCGTAAAACTCCAACGGTTATCCACCCCGGATACAAA
ATCAGCCGCATCCGGTCGTTCTACATGCGGAAGGTCAAGTTCACCCAGGA
GACCATCAGCGAGCGGCTGGGGGGGATCATCGCCGACTTCCCCCGCCTAG
ACGTGAGCAAGCCTACCCCCCCACCCCCACCTTCGCCTCCCCCTTAGGAT
GCGTGGTCAATAGTCGAACAGCGAAGGCTTGCAAAACTGGACCACTCCCC
ATCCCTCTACACGCCTCCGCTGCGGTTTCCATATATTTAGTTAGTTGAGA
TGGCAAGGCAATACAACGAACGGATTTTGCGCGCGGGAAATAAGCGATCG
ACGACGTTGCCGTCCCCGTCCCCGTCCCCGAGGTTGCTCCTTCGCGTGCG
CTCCGTTCTGATTCTGATTCTGATGTGCACTTCCTAGCAAGCTATCTCGT
TAAAGCGAGCGTGCCGCTGTAAGAAGGTGGACACTCTCGCCACCCTCTTG
CCTGTCAATCCGTTCAGAGGCCGTAATGCGTTTCGATTTCGTTTTTTCCG
CCGCAGTCCTTTTCATAAGGATTGAAATGGTCATTATGCGAGAGAGGTGT
ACGCTTGCGAATATTCAAGGGGGGGAACTCGATTCATTCGGTTCTGGGGA
TTGAAAGTGAAAGGTGTACGCTCACATAGGTTCAGGGAAAGCGCTAATTT
CATTGTTTAAAAATAAATAAATAGATGTGCGCATGTATGCACGCTCACAA
ATATTCGACCAGGAGCCCGATTCAGTTTATGTCCGTGGGTTAAATAACCC
TTCACAAATAACGGCTACGGTGGGGATGTGCTTTACGAAAAGGACGAAAT
TCGGTTACGTCTCCTCCGTCACCCCCCTCCGTCCCGCTCCCGAAATAAAA
TCGCCTCCATAGGACATCCATCCGTTCTACGCGGACCTGCTGAACATCCT
TTACGACCGCGACCACTACAAGCTCGCCCTTGGACAGATGAACATGGCCA
AAAAGCTGATCGAGGCCCTCAGCAGGGACTATGTTCGCCTTCTAAAATAC
GGTAAGTCACACGGCATACTATACGATACTATATATAGCCTACATAGCGC
CTGAGCACGCGATTGCCGTAGGTGACCTGGCTTACGATGAATAGCGGTAA
AGGACGCCCCGAGAGAGGGGGTCCCCCCCTCCCTCTCCTCCTCTTAATCG
CCTCTATTTAAAAAACAGGAGCGAGGATGACGTTATCTGTTGATAGGTCA
CTATTTTCGTGATGATATATCAAAGCACGCGCTTTCTTTGGTTTTCGTTG
CTGGGTGGTCTCCGCTGCGAAGGGGAAATTGAGCGGGGACAGCCGAACCA
TCATTCCCGGAGGTTGCATCACCATGCTTCTCTCGGGAACGGCTTGTCTT
GAGGATTTTAAGTCCCCCCCGCTGTCGCCGTCGCGCGATATCACGTTTTC
GTCGAGTTCTTGTTTCAAGATCATGCTTAGTACGATTGTTTTAAAGTACT
CGCGCGTGTTACACTCTGGAACATAACCCCCCCACCCCAAAAAAACCCGT
TGTAGGTAAATGCTGTGCTAGATAATGTCAGGAATTTCCCCTTTCAGCGA
ACAGGAACAGGGCGAGGCGGCGACGTACGTACTCCAGTTTTGCCTGCCGT
AGCTGTCAGACGACCATTGACATTGACCACGCGTTTCTTCGGGAGGACGG
AGTATTGTGCTTGTAGGGGGTATTCAGACAGCAGCTACAGTCAGGGTATT
GCTGGGGTTATAGATAAAAAAGGCGTGGTTGTTCGGAAGGTTCTAATGAG
TTCATATATATATTAATATAAATATATGTAGCTCTGAAGACAGGTCGAAA
TGTAAGTACCGCGGTCAAAAACAGGGAATCTTGCGGATATTAGTATTTTT
ATATGTGTTTGTGTGTATTCTGGGCGTATTCTGTGTGTGTGTGTGTTTTT
TTGCGTACTTGCGTCCGGCAGGCGATTCGTTGTATCGGTGCAAGCAGCTC
AAGCGAGCCGCCCTGGGGCGCATGTGCACTCTCCTAAAGAGACAGAAGGC
GTCTCTCTCGTACCTCGAAGAGGTGCGCCGACACCTGGCCCGTCTCCCAG
CGCTTGACCCGAACACCCGGACCCTGCTTCTCACAGGCTTCCCCAACGTG
GGCAAGTCGAGCTTCATGAACAAGGTCAGAAAGGCAGGAGCAAAGTGTGT
TTCTCTCTCTGTGTGTGTGTGTGTGTGTGTATATTTATTAAATTACACAT
AACCGCGCAATCCGGCCCTGTCGTCCTAGTAATTATATGCCACTCGTATT
GATCCTCCTAAGGGGGGGAAGGAGGGAGGTAGTGGAAGAAGGTGACTTCA
TGATTATGCTTTTAAAAATCGAGAACGCCAGTTTTTGTGTACAAACTCCT
CGTATTAGGCCGACCCAGAACCTTAACGCTCTATATATTACCCGACCAAT
ATTTAGCACATGTCTGACCAACAACAGTATAATGCGAAATTTATAGTATA
TAGTATGTAACATGTTGAATCAACCGGGAAGGAGGCGTCGTTAGGGGGGG
GGGAGGGGGAGGGGGAGGATACGAGATCGATTGATCGTGGGCGCAACTCG
AGCGATGATGATTCTGCTTTTCTGGAAGGTGGTGATGATTTCGGAAAGGA
TAATGGATTGATCGATCCCCTTCCTTTGAAGATCTTTCGATCTCTGTCAA
TCTTGATTTTTGATTTTCGATCGATCAGTTAACAATAAGTATGATGTAAA
AGAAATAACACAAAGCACATACACACACACACACACACACACACGCACGC
TGCATCCACAAATCACGCACATATGTGTAGATAAAAGCAACAACACGCTC
GGACGGAAGACAGCGATGGATGAGACCGTTGCACAGGCAAGGGGATCACG
GGGAGAGTTCGACGTGTATTTCCTATTTACGCGGGTTGAATATGGGAAAA
ATATTAGGGCTGGAGAAAGTATTAGAGTATTACGTAGGGCAGCCCCTCCT
GGGGATAGATTTGGTGGATTCTTTCTTAAAAGAAGGAGCCATAATGCTTC
CTTGATAATTTCCAGATTATAGGGGAAGAGGATGCGTAGCTCGACCCCCC
CCCCTCCCCCAGAAAAAAAGTTGTCTTTTACGCCCCCTTTCACCCTAACA
CCGGGGACAAATATTTAAGCCCCCCTTTCTATACTCCTTTAAATACAAAA
ACCTCCTTCATATACAAAAACCTCCTTCATATACAAAAACCCTTCAGGTG
ACAAGGGCCGAAGTGGACGTGCAGCCGTACGCGTTCACGACGAAATCTTT
GTACGTGGGGCACATGGACTACCGCTATCTCCGTTGGCAGGTGCGATCAG
AGGAAATATACACCTTTTTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig19857:79..4801-

>mRNA_H-elongata_contig19857.5566.1 ID=mRNA_H-elongata_contig19857.5566.1|Name=mRNA_H-elongata_contig19857.5566.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig19857:79..4801- (Himanthalia elongata Himel1 dioecious)
ATGGTGGTTTACAACTTCAAGAAGATGGCGCCGGTGCCCCCCGCGGAAGA
CTTCGTGGACATCATTCTAACGCGTACTCAGATGGTGGTTTACAACTTCA
AGAAGATGGCGCCGGTGCCCCCCGCGGAAGACTTCGTGGACATCATTCTA
ACGCGTACTCAGCGTAAAACTCCAACGGTTATCCACCCCGGATACAAAAT
CAGCCGCATCCGGTCGTTCTACATGCGGAAGGTCAAGTTCACCCAGGAGA
CCATCAGCGAGCGGCTGGGGGGGATCATCGCCGACTTCCCCCGCCTAGAC
CGTAAAACTCCAACGGTTATCCACCCCGGATACAAAATCAGCCGCATCCG
GTCGTTCTACATGCGGAAGGTCAAGTTCACCCAGGAGACCATCAGCGAGC
GGCTGGGGGGGATCATCGCCGACTTCCCCCGCCTAGACGACATCCATCCG
TTCTACGCGGACCTGCTGAACATCCTTTACGACCGCGACCACTACAAGCT
CGCCCTTGGACAGATGAACATGGCCAAAAAGCTGATCGAGGCCCTCAGCA
GGGACTATGTTCGCCTTCTAAAATACGGACATCCATCCGTTCTACGCGGA
CCTGCTGAACATCCTTTACGACCGCGACCACTACAAGCTCGCCCTTGGAC
AGATGAACATGGCCAAAAAGCTGATCGAGGCCCTCAGCAGGGACTATGTT
CGCCTTCTAAAATACGGCGATTCGTTGTATCGGTGCAAGCAGCTCAAGCG
AGCCGCCCTGGGGCGCATGTGCACTCTCCTAAAGAGACAGAAGGCGTCTC
TCTCGTACCTCGAAGAGGTGCGCCGACACCTGGCCCGTCTCCCAGCGCTT
GACCCGAACACCCGGACCCTGCTTCTCACAGGCTTCCCCAACGTGGGCAA
GTCGAGCTTCATGAACAAGGCGATTCGTTGTATCGGTGCAAGCAGCTCAA
GCGAGCCGCCCTGGGGCGCATGTGCACTCTCCTAAAGAGACAGAAGGCGT
CTCTCTCGTACCTCGAAGAGGTGCGCCGACACCTGGCCCGTCTCCCAGCG
CTTGACCCGAACACCCGGACCCTGCTTCTCACAGGCTTCCCCAACGTGGG
CAAGTCGAGCTTCATGAACAAGGTGACAAGGGCCGAAGTGGACGTGCAGC
CGTACGCGTTCACGACGAAATCTTTGTACGTGGGGCACATGGACTACCGC
TATCTCCGTTGGCAGGTGCGATCAGAGGAAATATACACCTTTTTGTAGGT
GACAAGGGCCGAAGTGGACGTGCAGCCGTACGCGTTCACGACGAAATCTT
TGTACGTGGGGCACATGGACTACCGCTATCTCCGTTGGCAGGTGCGATCA
GAGGAAATATACACCTTTTTGTAG
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