mRNA_H-elongata_contig198439.5561.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: D7G5W8_ECTSI (Putative homoaconitate hydratase, c-terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5W8_ECTSI) HSP 1 Score: 124 bits (312), Expect = 3.580e-33 Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 1
Query: 25 PLLLENPVSSIWGFLLSLQIEGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
P L ++ + +L+I G+TLA+IFREAGCLEPASPSCAACLGGPADTYARMN+PFQCVSTTNRNFPGRMGHK +Y+
Sbjct: 151 PTFLVPATQKVYNDIQTLKIGGRTLASIFREAGCLEPASPSCAACLGGPADTYARMNQPFQCVSTTNRNFPGRMGHKDAGIYL 233
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: A0A6H5KHV3_9PHAE (3-isopropylmalate dehydratase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV3_9PHAE) HSP 1 Score: 124 bits (311), Expect = 1.990e-31 Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 1
Query: 25 PLLLENPVSSIWGFLLSLQIEGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
P L ++ + +L+I G+TL +IFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHK +Y+
Sbjct: 408 PTFLVPATQKVYNDIQTLKIGGRTLGSIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKDAGIYL 490
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: X2KY86_SCYLO (3-isopropylmalate dehydratase n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=X2KY86_SCYLO) HSP 1 Score: 124 bits (311), Expect = 2.290e-31 Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 1
Query: 25 PLLLENPVSSIWGFLLSLQIEGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
P L ++ + ++ I G+TLA+IFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHK +Y+
Sbjct: 427 PTFLVPATQKVYNDIQTMTIGGRTLASIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKGAGIYL 509
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: A0A835YVF1_9STRA (3-isopropylmalate dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF1_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.160e-28 Identity = 53/77 (68.83%), Postives = 62/77 (80.52%), Query Frame = 1
Query: 25 PLLLENPVSSIWGFLLSLQIEGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHK 255
P L ++ + +L+I G+T+A IFREAGC+EPASPSCAACLGGPADT+ARMNEP CVSTTNRNFPGRMGHK
Sbjct: 356 PTFLVPATQKVYNDIQNLKINGRTMAQIFREAGCIEPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHK 432
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: W7TZ20_9STRA (3-isopropylmalate dehydratase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ20_9STRA) HSP 1 Score: 113 bits (283), Expect = 1.530e-27 Identity = 53/77 (68.83%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 25 PLLLENPVSSIWGFLLSLQIEGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHK 255
P L ++ L SL + G+TLA IFR+AGC++PASPSCAACLGGPADT+ARMNEP CVSTTNRNFPGRMGHK
Sbjct: 390 PTFLVPATRRVYDDLYSLTLGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHK 466
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: A0A6P0Y465_9CYAN (3-isopropylmalate dehydratase (Fragment) n=1 Tax=Okeania sp. SIO2D1 TaxID=2607792 RepID=A0A6P0Y465_9CYAN) HSP 1 Score: 102 bits (254), Expect = 2.500e-26 Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 25 PLLLENPVSSIWGFLLSLQIEGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
P L +++ L S++ +GQTL+ IF AGCLEPA PSCAAC+GGP DT+ R+NE CVSTTNRNFPGRMG+K +Y+
Sbjct: 9 PTYLVPATQTVYNDLFSIKHDGQTLSEIFLNAGCLEPAPPSCAACVGGPLDTFGRLNEAHVCVSTTNRNFPGRMGNKQAQIYL 91
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: C0Z3H8_ARATH (AT4G13430 protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=C0Z3H8_ARATH) HSP 1 Score: 103 bits (256), Expect = 6.790e-26 Identity = 51/86 (59.30%), Postives = 59/86 (68.60%), Query Frame = 1
Query: 25 PLLLENPVSSIWGFLLSLQIEG---QTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
P L +W + +L + G +T A IF EAGC PASPSC ACLGGPADTYAR+NEP CVSTTNRNFPGRMGHK +Y+
Sbjct: 67 PTFLVPATQKVWMDVYALPVPGAGGKTCAQIFEEAGCDTPASPSCGACLGGPADTYARLNEPQVCVSTTNRNFPGRMGHKEGQIYL 152
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: A0A699ZIY9_HAELA (3-isopropylmalate dehydratase n=2 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZIY9_HAELA) HSP 1 Score: 101 bits (252), Expect = 7.070e-26 Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 25 PLLLENPVSSIWGFLLSLQI---EGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
P L +W + ++ + +G+T A IF AGC+ PA+PSCAACLGGP DT+ARMNEP CVSTTNRNFPGRMGHK +Y+
Sbjct: 17 PTYLVPATQKVWADVYTVPVPGCDGKTAAEIFEAAGCVTPAAPSCAACLGGPRDTFARMNEPEVCVSTTNRNFPGRMGHKEGQIYL 102
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: A0A2J8AI36_9CHLO (3-isopropylmalate dehydratase n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AI36_9CHLO) HSP 1 Score: 104 bits (260), Expect = 1.560e-25 Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 25 PLLLENPVSSIWGFLLSLQI---EGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
P L +W + ++ + +G+T A IF EAGC+ PA+PSCAACLGGP DT+ARMNEP CVSTTNRNFPGRMGHK +Y+
Sbjct: 165 PTYLVPATQKVWADVYTMPVPGCDGKTAAEIFEEAGCVSPAAPSCAACLGGPRDTFARMNEPEVCVSTTNRNFPGRMGHKEGQIYL 250
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: A0A5J5ABA1_9ASTE (Aconitase domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5ABA1_9ASTE) HSP 1 Score: 100 bits (249), Expect = 1.660e-25 Identity = 49/86 (56.98%), Postives = 58/86 (67.44%), Query Frame = 1
Query: 25 PLLLENPVSSIWGFLLSLQIEG---QTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
P L +W + SL + G +T + IF +AGC PASPSC ACLGGP DTYAR+NEP CVSTTNRNFPGRMGHK +Y+
Sbjct: 17 PTFLVPATQKVWMDIYSLPVPGSGGKTCSQIFEQAGCDTPASPSCGACLGGPRDTYARLNEPQVCVSTTNRNFPGRMGHKEGQIYL 102 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig198439.5561.1 >prot_H-elongata_contig198439.5561.1 ID=prot_H-elongata_contig198439.5561.1|Name=mRNA_H-elongata_contig198439.5561.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp GGKGSSGQPLLLENPVSSIWGFLLSLQIEGQTLAAIFREAGCLEPASPSCback to top mRNA from alignment at H-elongata_contig198439:100..372+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig198439.5561.1 ID=mRNA_H-elongata_contig198439.5561.1|Name=mRNA_H-elongata_contig198439.5561.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at H-elongata_contig198439:100..372+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig198439:100..372+ >mRNA_H-elongata_contig198439.5561.1 ID=mRNA_H-elongata_contig198439.5561.1|Name=mRNA_H-elongata_contig198439.5561.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig198439:100..372+ (Himanthalia elongata Himel1 dioecious)back to top |