mRNA_H-elongata_contig198439.5561.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198439.5561.1
Unique NamemRNA_H-elongata_contig198439.5561.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: D7G5W8_ECTSI (Putative homoaconitate hydratase, c-terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5W8_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.580e-33
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 1
Query:   25 PLLLENPVSSIWGFLLSLQIEGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
            P  L      ++  + +L+I G+TLA+IFREAGCLEPASPSCAACLGGPADTYARMN+PFQCVSTTNRNFPGRMGHK   +Y+
Sbjct:  151 PTFLVPATQKVYNDIQTLKIGGRTLASIFREAGCLEPASPSCAACLGGPADTYARMNQPFQCVSTTNRNFPGRMGHKDAGIYL 233          
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: A0A6H5KHV3_9PHAE (3-isopropylmalate dehydratase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV3_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.990e-31
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 1
Query:   25 PLLLENPVSSIWGFLLSLQIEGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
            P  L      ++  + +L+I G+TL +IFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHK   +Y+
Sbjct:  408 PTFLVPATQKVYNDIQTLKIGGRTLGSIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKDAGIYL 490          
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: X2KY86_SCYLO (3-isopropylmalate dehydratase n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=X2KY86_SCYLO)

HSP 1 Score: 124 bits (311), Expect = 2.290e-31
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 1
Query:   25 PLLLENPVSSIWGFLLSLQIEGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
            P  L      ++  + ++ I G+TLA+IFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHK   +Y+
Sbjct:  427 PTFLVPATQKVYNDIQTMTIGGRTLASIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKGAGIYL 509          
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: A0A835YVF1_9STRA (3-isopropylmalate dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.160e-28
Identity = 53/77 (68.83%), Postives = 62/77 (80.52%), Query Frame = 1
Query:   25 PLLLENPVSSIWGFLLSLQIEGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHK 255
            P  L      ++  + +L+I G+T+A IFREAGC+EPASPSCAACLGGPADT+ARMNEP  CVSTTNRNFPGRMGHK
Sbjct:  356 PTFLVPATQKVYNDIQNLKINGRTMAQIFREAGCIEPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHK 432          
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: W7TZ20_9STRA (3-isopropylmalate dehydratase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ20_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.530e-27
Identity = 53/77 (68.83%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   25 PLLLENPVSSIWGFLLSLQIEGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHK 255
            P  L      ++  L SL + G+TLA IFR+AGC++PASPSCAACLGGPADT+ARMNEP  CVSTTNRNFPGRMGHK
Sbjct:  390 PTFLVPATRRVYDDLYSLTLGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHK 466          
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: A0A6P0Y465_9CYAN (3-isopropylmalate dehydratase (Fragment) n=1 Tax=Okeania sp. SIO2D1 TaxID=2607792 RepID=A0A6P0Y465_9CYAN)

HSP 1 Score: 102 bits (254), Expect = 2.500e-26
Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   25 PLLLENPVSSIWGFLLSLQIEGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
            P  L     +++  L S++ +GQTL+ IF  AGCLEPA PSCAAC+GGP DT+ R+NE   CVSTTNRNFPGRMG+K   +Y+
Sbjct:    9 PTYLVPATQTVYNDLFSIKHDGQTLSEIFLNAGCLEPAPPSCAACVGGPLDTFGRLNEAHVCVSTTNRNFPGRMGNKQAQIYL 91          
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: C0Z3H8_ARATH (AT4G13430 protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=C0Z3H8_ARATH)

HSP 1 Score: 103 bits (256), Expect = 6.790e-26
Identity = 51/86 (59.30%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   25 PLLLENPVSSIWGFLLSLQIEG---QTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
            P  L      +W  + +L + G   +T A IF EAGC  PASPSC ACLGGPADTYAR+NEP  CVSTTNRNFPGRMGHK   +Y+
Sbjct:   67 PTFLVPATQKVWMDVYALPVPGAGGKTCAQIFEEAGCDTPASPSCGACLGGPADTYARLNEPQVCVSTTNRNFPGRMGHKEGQIYL 152          
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: A0A699ZIY9_HAELA (3-isopropylmalate dehydratase n=2 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZIY9_HAELA)

HSP 1 Score: 101 bits (252), Expect = 7.070e-26
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 1
Query:   25 PLLLENPVSSIWGFLLSLQI---EGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
            P  L      +W  + ++ +   +G+T A IF  AGC+ PA+PSCAACLGGP DT+ARMNEP  CVSTTNRNFPGRMGHK   +Y+
Sbjct:   17 PTYLVPATQKVWADVYTVPVPGCDGKTAAEIFEAAGCVTPAAPSCAACLGGPRDTFARMNEPEVCVSTTNRNFPGRMGHKEGQIYL 102          
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: A0A2J8AI36_9CHLO (3-isopropylmalate dehydratase n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AI36_9CHLO)

HSP 1 Score: 104 bits (260), Expect = 1.560e-25
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1
Query:   25 PLLLENPVSSIWGFLLSLQI---EGQTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
            P  L      +W  + ++ +   +G+T A IF EAGC+ PA+PSCAACLGGP DT+ARMNEP  CVSTTNRNFPGRMGHK   +Y+
Sbjct:  165 PTYLVPATQKVWADVYTMPVPGCDGKTAAEIFEEAGCVSPAAPSCAACLGGPRDTFARMNEPEVCVSTTNRNFPGRMGHKEGQIYL 250          
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Match: A0A5J5ABA1_9ASTE (Aconitase domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5ABA1_9ASTE)

HSP 1 Score: 100 bits (249), Expect = 1.660e-25
Identity = 49/86 (56.98%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   25 PLLLENPVSSIWGFLLSLQIEG---QTLAAIFREAGCLEPASPSCAACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI 273
            P  L      +W  + SL + G   +T + IF +AGC  PASPSC ACLGGP DTYAR+NEP  CVSTTNRNFPGRMGHK   +Y+
Sbjct:   17 PTFLVPATQKVWMDIYSLPVPGSGGKTCSQIFEQAGCDTPASPSCGACLGGPRDTYARLNEPQVCVSTTNRNFPGRMGHKEGQIYL 102          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198439.5561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5W8_ECTSI3.580e-3369.88Putative homoaconitate hydratase, c-terminal part ... [more]
A0A6H5KHV3_9PHAE1.990e-3169.883-isopropylmalate dehydratase n=1 Tax=Ectocarpus s... [more]
X2KY86_SCYLO2.290e-3169.883-isopropylmalate dehydratase n=1 Tax=Scytosiphon ... [more]
A0A835YVF1_9STRA1.160e-2868.833-isopropylmalate dehydratase n=1 Tax=Tribonema mi... [more]
W7TZ20_9STRA1.530e-2768.833-isopropylmalate dehydratase n=2 Tax=Monodopsidac... [more]
A0A6P0Y465_9CYAN2.500e-2656.633-isopropylmalate dehydratase (Fragment) n=1 Tax=O... [more]
C0Z3H8_ARATH6.790e-2659.30AT4G13430 protein n=1 Tax=Arabidopsis thaliana Tax... [more]
A0A699ZIY9_HAELA7.070e-2655.813-isopropylmalate dehydratase n=2 Tax=Haematococcu... [more]
A0A2J8AI36_9CHLO1.560e-2556.983-isopropylmalate dehydratase n=1 Tax=Tetrabaena s... [more]
A0A5J5ABA1_9ASTE1.660e-2556.98Aconitase domain-containing protein n=1 Tax=Nyssa ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198439contigH-elongata_contig198439:100..372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue1.2e-26
Seed eggNOG ortholog2880.D7G5W8
Preferred nameLEU1
KEGG rclassRC00497,RC00976,RC00977,RC01041,RC01046,RC03072
KEGG koko:K00749,ko:K01702,ko:K01703
KEGG ReactionR03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170
KEGG Pathwayko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230
KEGG ModuleM00432,M00535
GOsGO:0003674,GO:0003824,GO:0003861,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0010038,GO:0010494,GO:0016053,GO:0016143,GO:0016144,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016866,GO:0019748,GO:0019752,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0032991,GO:0035770,GO:0036464,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046394,GO:0046686,GO:0050486,GO:0050896,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901657,GO:1901659,GO:1990904
EggNOG free text desc.3-isopropylmalate dehydratase activity
EggNOG OGsCOG0065@1,KOG0454@2759
EC2.4.1.183,4.2.1.33,4.2.1.35
COG Functional cat.E
CAZyGT5
BiGG ReactioniMM904.YGL009C,iND750.YGL009C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930120.7241013-CDS-H-elongata_contig198439:99..3721622930120.7241013-CDS-H-elongata_contig198439:99..372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198439 100..372 +
1691679288.643582-CDS-H-elongata_contig198439:99..3721691679288.643582-CDS-H-elongata_contig198439:99..372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198439 100..372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198439.5561.1prot_H-elongata_contig198439.5561.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198439 100..372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198439.5561.1

>prot_H-elongata_contig198439.5561.1 ID=prot_H-elongata_contig198439.5561.1|Name=mRNA_H-elongata_contig198439.5561.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
GGKGSSGQPLLLENPVSSIWGFLLSLQIEGQTLAAIFREAGCLEPASPSC
AACLGGPADTYARMNEPFQCVSTTNRNFPGRMGHKVIYLYI
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mRNA from alignment at H-elongata_contig198439:100..372+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198439.5561.1 ID=mRNA_H-elongata_contig198439.5561.1|Name=mRNA_H-elongata_contig198439.5561.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at H-elongata_contig198439:100..372+ (Himanthalia elongata Himel1 dioecious)
GGGGGAAAGGGGAGTTCCGGTCAGCCTCTTTTACTCGAAAACCCTGTCTC ATCCATTTGGGGCTTTTTATTGTCTTTGCAGATCGAAGGGCAAACCCTGG CGGCGATCTTCCGCGAGGCTGGCTGTCTGGAGCCCGCATCACCTTCCTGT GCGGCGTGCCTGGGGGGACCTGCGGACACTTACGCCCGCATGAACGAGCC CTTCCAATGTGTCTCCACAACCAACCGCAACTTCCCCGGACGGATGGGAC ACAAGGTGATATATTTATATATA
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Coding sequence (CDS) from alignment at H-elongata_contig198439:100..372+

>mRNA_H-elongata_contig198439.5561.1 ID=mRNA_H-elongata_contig198439.5561.1|Name=mRNA_H-elongata_contig198439.5561.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig198439:100..372+ (Himanthalia elongata Himel1 dioecious)
GGGGGAAAGGGGAGTTCCGGTCAGCCTCTTTTACTCGAAAACCCTGTCTC
ATCCATTTGGGGCTTTTTATTGTCTTTGCAGATCGAAGGGCAAACCCTGG
CGGCGATCTTCCGCGAGGCTGGCTGTCTGGAGCCCGCATCACCTTCCTGT
GCGGCGTGCCTGGGGGGACCTGCGGACACTTACGCCCGCATGAACGAGCC
CTTCCAATGTGTCTCCACAACCAACCGCAACTTCCCCGGACGGATGGGAC
ACAAGGTGATATATTTATATATAGGGGGAAAGGGGAGTTCCGGTCAGCCT
CTTTTACTCGAAAACCCTGTCTCATCCATTTGGGGCTTTTTATTGTCTTT
GCAGATCGAAGGGCAAACCCTGGCGGCGATCTTCCGCGAGGCTGGCTGTC
TGGAGCCCGCATCACCTTCCTGTGCGGCGTGCCTGGGGGGACCTGCGGAC
ACTTACGCCCGCATGAACGAGCCCTTCCAATGTGTCTCCACAACCAACCG
CAACTTCCCCGGACGGATGGGACACAAGGTGATATATTTATATATA
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