mRNA_H-elongata_contig198410.5560.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198410.5560.1
Unique NamemRNA_H-elongata_contig198410.5560.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig198410.5560.1 vs. uniprot
Match: A0A6H5JQW7_9PHAE (PAP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQW7_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.010e-34
Identity = 65/79 (82.28%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:    7 QATEALVAIQEGNLVLAGDLGSDLIPALVGEWRLLYTSSNAMEYNQGLTGLVNTIPNAKFRGLRQILHADGMVFDAEYE 243
            +A EAL+A +EGNLVL  DLG+ LI  L GEWRLLYTSSNAMEYNQGLTGL NTIPNAKF+GLRQILHADGMVFDAEYE
Sbjct:  571 EAMEALLATEEGNLVLGDDLGTGLIDTLAGEWRLLYTSSNAMEYNQGLTGLANTIPNAKFQGLRQILHADGMVFDAEYE 649
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BLAST of mRNA_H-elongata_contig198410.5560.1 vs. uniprot
Match: A0A7S4MXT9_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXT9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.260e-9
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   88 LVGEWRLLYTSSNAMEYNQGLTGLVNTIPNAKFRGLRQILHADGMVFDAEY 240
            L GEW LLY+SS+AM++N+GL+GL  + PN KF GL+Q L A   + D EY
Sbjct:  477 LTGEWELLYSSSSAMKFNKGLSGLGGSFPNGKFGGLKQKLEASKFMSDVEY 527
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BLAST of mRNA_H-elongata_contig198410.5560.1 vs. uniprot
Match: A0A7S2VA60_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VA60_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.350e-8
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   73 DLIPA-LVGEWRLLYTSSNAMEYNQGLTGLVNTIPNAKFRGLRQILHADGMVFDAEYE 243
            D+ P+ + G W LLYTSS+AM++NQGL+GL  + PN KF GL Q L ++ +  D EY+
Sbjct:  132 DIQPSDVTGAWELLYTSSSAMKFNQGLSGLGGSFPNGKFGGLTQNLISNKLFSDVEYK 189
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BLAST of mRNA_H-elongata_contig198410.5560.1 vs. uniprot
Match: A0A7S2EW54_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EW54_TRICV)

HSP 1 Score: 59.7 bits (143), Expect = 1.450e-8
Identity = 30/79 (37.97%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    7 QATEALVAIQEGNLVLAGDLGSDLIPA-LVGEWRLLYTSSNAMEYNQGLTGLVNTIPNAKFRGLRQILHADGMVFDAEY 240
            Q  + + A++ G+   A + G ++IP+ + G W LL++SS+AM++N+GL+GL  + PN  F GL Q L +   + D EY
Sbjct:  316 QVLDLVSAMEAGSSNAAKEKGGNIIPSDVAGNWELLFSSSSAMKFNKGLSGLGGSFPNGSFGGLVQKLQSSKYMSDIEY 394
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BLAST of mRNA_H-elongata_contig198410.5560.1 vs. uniprot
Match: A0A7S1CXT1_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXT1_CYCTE)

HSP 1 Score: 58.5 bits (140), Expect = 2.460e-8
Identity = 25/51 (49.02%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   88 LVGEWRLLYTSSNAMEYNQGLTGLVNTIPNAKFRGLRQILHADGMVFDAEY 240
            L G+W LLYT+S+AM++N+GL+G+  + PN KF GL+Q L +  ++ D EY
Sbjct:  111 LNGKWELLYTTSSAMKFNKGLSGIGGSFPNGKFGGLQQTLISSRLISDVEY 161
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BLAST of mRNA_H-elongata_contig198410.5560.1 vs. uniprot
Match: A0A7S4AVJ8_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AVJ8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.800e-7
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:   34 QEGNLVLAGDLGSDLIPALVGEWRLLYTSSNAMEYNQGLTGLVNTIPNAKFRGLRQILHADGMVFDAEYE 243
            Q  N++L  D G+     L G W L+YTSS+AM++N+GL+G+  + PN +F GLRQ L A   + D  Y+
Sbjct:  479 QPTNMILQKD-GNIEQADLAGMWELVYTSSSAMKFNKGLSGIGGSFPNGRFDGLRQELIATKFLTDVVYK 547
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BLAST of mRNA_H-elongata_contig198410.5560.1 vs. uniprot
Match: A0A1Z5JKP9_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKP9_FISSO)

HSP 1 Score: 55.5 bits (132), Expect = 4.560e-7
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   88 LVGEWRLLYTSSNAMEYNQGLTGLVNTIPNAKFRGLRQILHADGMVFDAEY 240
            + G W LLY+SS+AM++N+GL+GL  + PN KF GL+  L +   + D EY
Sbjct:  415 IAGNWELLYSSSSAMKFNKGLSGLGGSFPNGKFGGLKMRLDSSKYMSDVEY 465
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BLAST of mRNA_H-elongata_contig198410.5560.1 vs. uniprot
Match: A0A448ZGI3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGI3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.170e-6
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   34 QEGNLVLAGDLGSDLIPALVGEWRLLYTSSNAMEYNQGLTGLVNTIPNAKFRGLRQILHADGMVFDAEYE 243
            Q  N+++  D G+     L G W L+YTSS+AM++N+GL+G+  + PN KF  LRQ L A   + D  Y+
Sbjct:  444 QPTNMIVQKD-GNIEQSDLAGTWELIYTSSSAMKFNKGLSGIGGSFPNGKFGSLRQDLIATKFLSDMFYK 512
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198410.5560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JQW7_9PHAE2.010e-3482.28PAP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7S4MXT9_9STRA2.260e-954.90Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2VA60_9STRA1.350e-850.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S2EW54_TRICV1.450e-837.97Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1CXT1_CYCTE2.460e-849.02Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4AVJ8_9STRA1.800e-742.86Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A1Z5JKP9_FISSO4.560e-747.06Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A448ZGI3_9STRA1.170e-641.43Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198410contigH-elongata_contig198410:118..938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue2.3e-29
Seed eggNOG ortholog2880.D7FMY0
EggNOG OGs2EM9Y@1,2SQZZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930120.6729786-CDS-H-elongata_contig198410:117..2161622930120.6729786-CDS-H-elongata_contig198410:117..216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198410 118..216 -
1691679288.616454-CDS-H-elongata_contig198410:117..2161691679288.616454-CDS-H-elongata_contig198410:117..216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198410 118..216 -
1622930120.685027-CDS-H-elongata_contig198410:794..9381622930120.685027-CDS-H-elongata_contig198410:794..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198410 795..938 -
1691679288.6323755-CDS-H-elongata_contig198410:794..9381691679288.6323755-CDS-H-elongata_contig198410:794..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198410 795..938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198410.5560.1prot_H-elongata_contig198410.5560.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198410 118..938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198410.5560.1

>prot_H-elongata_contig198410.5560.1 ID=prot_H-elongata_contig198410.5560.1|Name=mRNA_H-elongata_contig198410.5560.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
LAQATEALVAIQEGNLVLAGDLGSDLIPALVGEWRLLYTSSNAMEYNQGL
TGLVNTIPNAKFRGLRQILHADGMVFDAEYE
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mRNA from alignment at H-elongata_contig198410:118..938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198410.5560.1 ID=mRNA_H-elongata_contig198410.5560.1|Name=mRNA_H-elongata_contig198410.5560.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=821bp|location=Sequence derived from alignment at H-elongata_contig198410:118..938- (Himanthalia elongata Himel1 dioecious)
CTCGCCCAGGCCACCGAAGCGCTAGTGGCGATCCAAGAGGGCAACCTCGT
GCTCGCGGGGGATCTGGGCTCCGATCTCATCCCTGCCTTGGTGGGAGAGT
GGCGACTGCTCTACACGTCCAGCAACGCGATGGAGTACAATCAGGTTTGG
AGGAGAATAAGGCGCGGGGGGGGGTAGAGGGGAGCGGATGACGTCACCTT
CTTAGCTCTGTGCGAGGAACTCTTTTCGTAGGGGTTCTGCGCGTTAGTTG
ATGCTCGGGAGGGGAAACCCATCGTCACCATCTTGACCAGCGATGTGATT
AGCAGTATGCCAATATCAGTGGAAGTAGTTGAAGTTGTGGTGGTAAGCTT
TGCCCCCCACCCTTTAGCTGATTTTTTCGTTATGGGGTACAGTTTTATGG
AGAATCTAGGGTCACATCTTGGGCGCCTGGAGGCATGCTGATTTGCGATC
ATCAGGGGCAACGAACGCCCTTTGTTCTTCCACCGTCGCCCTTTGCTCTT
CCACCGTCGTCGAGGTCTGGCACCCCCTTCCCCCTCCCCTTCTTCCAAAA
CAAGTAATCTGCGGCTATCTGTACCGTCCGTCCTGTATTGCCTTGTCTTG
TGTTAAGGGAGGGAATACCTCCCGCATTCACAAAACCACCGCCCCTCACT
GAACGCCTTCCATGGACTCCCGTTTCTCGTCTGTCGGGTGCGCGTGGCGT
GGACTGTACTGAAACTCGGCAGGGTCTGACCGGTCTCGTGAACACCATCC
CGAACGCGAAGTTCCGCGGGCTTCGGCAAATCCTGCACGCCGACGGCATG
GTGTTCGATGCTGAATACGAG
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Coding sequence (CDS) from alignment at H-elongata_contig198410:118..938-

>mRNA_H-elongata_contig198410.5560.1 ID=mRNA_H-elongata_contig198410.5560.1|Name=mRNA_H-elongata_contig198410.5560.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig198410:118..938- (Himanthalia elongata Himel1 dioecious)
CTCGCCCAGGCCACCGAAGCGCTAGTGGCGATCCAAGAGGGCAACCTCGT
GCTCGCGGGGGATCTGGGCTCCGATCTCATCCCTGCCTTGGTGGGAGAGT
GGCGACTGCTCTACACGTCCAGCAACGCGATGGAGTACAATCAGCTCGCC
CAGGCCACCGAAGCGCTAGTGGCGATCCAAGAGGGCAACCTCGTGCTCGC
GGGGGATCTGGGCTCCGATCTCATCCCTGCCTTGGTGGGAGAGTGGCGAC
TGCTCTACACGTCCAGCAACGCGATGGAGTACAATCAGGGTCTGACCGGT
CTCGTGAACACCATCCCGAACGCGAAGTTCCGCGGGCTTCGGCAAATCCT
GCACGCCGACGGCATGGTGTTCGATGCTGAATACGAGGGTCTGACCGGTC
TCGTGAACACCATCCCGAACGCGAAGTTCCGCGGGCTTCGGCAAATCCTG
CACGCCGACGGCATGGTGTTCGATGCTGAATACGAG
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