mRNA_H-elongata_contig19836.5559.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19836.5559.1
Unique NamemRNA_H-elongata_contig19836.5559.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19836.5559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19836contigH-elongata_contig19836:1720..2498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size212
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930120.619073-CDS-H-elongata_contig19836:1719..18881622930120.619073-CDS-H-elongata_contig19836:1719..1888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19836 1720..1888 +
1691679288.5885334-CDS-H-elongata_contig19836:1719..18881691679288.5885334-CDS-H-elongata_contig19836:1719..1888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19836 1720..1888 +
1622930120.6337388-CDS-H-elongata_contig19836:2457..24981622930120.6337388-CDS-H-elongata_contig19836:2457..2498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19836 2458..2498 +
1691679288.6003914-CDS-H-elongata_contig19836:2457..24981691679288.6003914-CDS-H-elongata_contig19836:2457..2498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19836 2458..2498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19836.5559.1prot_H-elongata_contig19836.5559.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19836 1720..2498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19836.5559.1

>prot_H-elongata_contig19836.5559.1 ID=prot_H-elongata_contig19836.5559.1|Name=mRNA_H-elongata_contig19836.5559.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
RKTPTVKHLDFSMDEVYDARIDVVPGVDATASTGRRPSEVHTSRRGPPSL
GIAAGEEQVPGLVREFMSSQ
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mRNA from alignment at H-elongata_contig19836:1720..2498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19836.5559.1 ID=mRNA_H-elongata_contig19836.5559.1|Name=mRNA_H-elongata_contig19836.5559.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=779bp|location=Sequence derived from alignment at H-elongata_contig19836:1720..2498+ (Himanthalia elongata Himel1 dioecious)
AGGAAGACTCCAACCGTAAAACATTTGGACTTTAGCATGGATGAAGTCTA
TGATGCAAGAATCGATGTCGTTCCGGGTGTGGATGCAACAGCGAGTACAG
GGAGAAGGCCGTCGGAGGTGCATACTAGTCGCAGGGGACCCCCTTCGCTT
GGAATCGCGGCTGGCGAGGGTGAGGGATCGGGGTGCCTGGAAATATCTTT
AAACTCTGGCTTACGATAAATAAAGTTAGGGAGCAAGAGTGAGAGGGTCT
CCCTCGGGTATTAGTGCGTTTGAAACCAAATATGGTCTTTCTCTTTTTTA
TTTTCACAGTTTTTCTTTTTTCTTATTAAAAAAAAGCATGACCTCATTCC
AACCCCCTCCGACGCTTTCTTAGCACCGTGAGAGGTACAGTCCAAGTTAT
CGTCAGGTTCGAATGTATACACTACTACCTTCGAGCGCAAAATAGTCATA
CATGTGATTGATCGTGTTCCCCAACAGTAAATTCATCGGGTCGACGGTAT
AATGTCCGGGATCCCATCATTAGCCTGTATACTTACATTAGCCATCATGT
GGGGACGCCAAACCATGTTATATGTTCAGCGAAAAGCCCCAAACAAGCAT
GTTTGGGGAAAATACGCCCAATCGGCATAATACTGTGGGGAAAAGATTGA
ATATACTTAGACATATACCGCCATTATGGCTCTTACATGGAAATATTTAT
ATCAAAATGATCAAGCGTGATCTTGCCCACGTTGTCAGAGCAAGTTCCCG
GCCTAGTGAGAGAGTTCATGAGCAGCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig19836:1720..2498+

>mRNA_H-elongata_contig19836.5559.1 ID=mRNA_H-elongata_contig19836.5559.1|Name=mRNA_H-elongata_contig19836.5559.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig19836:1720..2498+ (Himanthalia elongata Himel1 dioecious)
AGGAAGACTCCAACCGTAAAACATTTGGACTTTAGCATGGATGAAGTCTA
TGATGCAAGAATCGATGTCGTTCCGGGTGTGGATGCAACAGCGAGTACAG
GGAGAAGGCCGTCGGAGGTGCATACTAGTCGCAGGGGACCCCCTTCGCTT
GGAATCGCGGCTGGCGAGGAGGAAGACTCCAACCGTAAAACATTTGGACT
TTAGCATGGATGAAGTCTATGATGCAAGAATCGATGTCGTTCCGGGTGTG
GATGCAACAGCGAGTACAGGGAGAAGGCCGTCGGAGGTGCATACTAGTCG
CAGGGGACCCCCTTCGCTTGGAATCGCGGCTGGCGAGGAGCAAGTTCCCG
GCCTAGTGAGAGAGTTCATGAGCAGCCAGAGCAAGTTCCCGGCCTAGTGA
GAGAGTTCATGAGCAGCCAG
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