mRNA_H-elongata_contig198333.5556.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: D7FSI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSI4_ECTSI) HSP 1 Score: 76.6 bits (187), Expect = 3.550e-15 Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 1
Query: 46 RPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLSGDF 174
RPA+LAIRAFNVETAAIKDSVRGN+MPG+MR+QWWKD ++ F
Sbjct: 41 RPASLAIRAFNVETAAIKDSVRGNVMPGKMRMQWWKDTMADVF 83
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: A0A4D9CW87_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW87_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 5.060e-9 Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 1
Query: 43 NRPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLS 165
+R A A+RAFNVETA IKD RGN +PG+MR+QWW++ +S
Sbjct: 51 SRRAYFALRAFNVETALIKDVARGNTLPGQMRMQWWREVIS 91
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: A0A5C5FLZ8_9BASI (Uncharacterized protein (Fragment) n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5FLZ8_9BASI) HSP 1 Score: 52.0 bits (123), Expect = 1.680e-7 Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 1
Query: 22 YLSTFCPNR--PAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLSG 168
+ S F P + PA A+RAFNVE AA+ D V N M GRMR QWWKD + G
Sbjct: 12 WASYFYPQQLQPAYWALRAFNVELAALPDQV-SNQMIGRMRFQWWKDAVKG 61
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: A0A835YPK2_9STRA (Squalene/phytoene synthase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPK2_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 3.190e-7 Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 46 RPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLS 165
RP+ LA+RAFNVE A+IK++VR N G MR+QWW D ++
Sbjct: 63 RPSLLALRAFNVEIASIKEAVRNNTRSGTMRMQWWMDVVN 102
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: F0VYL5_9STRA (Uncharacterized protein AlNc14C1G22 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VYL5_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 1.110e-6 Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 1
Query: 22 YLSTFC------PNRPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLSGDF 174
Y + FC +R A AIRAFNVETA I+D G L PG +R+QWW++ + F
Sbjct: 36 YTNYFCGLLFPQDHREAYFAIRAFNVETARIRDMAHGKLAPGTIRMQWWREKIQSLF 92
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: A0A7R9YES8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YES8_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 1.540e-6 Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1
Query: 46 RPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLSGDF 174
+PA AIRAFNVETA IKD++ GN GR+RIQ+W++ + F
Sbjct: 58 QPALAAIRAFNVETAVIKDAISGNSDMGRIRIQFWRELIRDVF 100
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: A0A316ZCR7_9BASI (Uncharacterized protein n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316ZCR7_9BASI) HSP 1 Score: 52.4 bits (124), Expect = 2.160e-6 Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1
Query: 46 RPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLSGDF 174
RP LA+RAFNVETA IKD+V + GR+R+ WW+D + G F
Sbjct: 72 RPHYLALRAFNVETATIKDNVSNETL-GRIRVGWWRDAVRGAF 113
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: A0A4R3MJ13_9HYPH (Phytoene synthase n=1 Tax=Tepidamorphus gemmatus TaxID=747076 RepID=A0A4R3MJ13_9HYPH) HSP 1 Score: 51.2 bits (121), Expect = 5.240e-6 Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1
Query: 22 YLST-FCP--NRPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLSG 168
YL+T F P RPA A+ AFN+E A ++D V L PG MR+QWW+D L+G
Sbjct: 23 YLTTLFAPADRRPALQALYAFNIEVARVRDLVSDPL-PGEMRLQWWRDALTG 73
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: A0A429YYX4_9HYPH (Phytoene/squalene synthase family protein n=1 Tax=Aquibium carbonis TaxID=2495581 RepID=A0A429YYX4_9HYPH) HSP 1 Score: 50.4 bits (119), Expect = 9.550e-6 Identity = 21/40 (52.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 46 RPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLS 165
RPA LA+ AFN+E A ++D+VR L PG +R+QWW+D ++
Sbjct: 31 RPALLALYAFNIEVARVRDAVREPL-PGEIRLQWWRDAIA 69
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Match: UPI001903A0A2 (isoprenoid synthase domain-containing protein n=2 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI001903A0A2) HSP 1 Score: 50.4 bits (119), Expect = 1.030e-5 Identity = 21/40 (52.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 46 RPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWKDCLS 165
RP+ AIRAFN+ETA +KD V + + GR+R+QWW+D ++
Sbjct: 60 RPSFFAIRAFNIETATVKDQVSNSAL-GRIRMQWWRDTVN 98 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198333.5556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig198333.5556.1 >prot_H-elongata_contig198333.5556.1 ID=prot_H-elongata_contig198333.5556.1|Name=mRNA_H-elongata_contig198333.5556.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp MGLPFPPYLSTFCPNRPAALAIRAFNVETAAIKDSVRGNLMPGRMRIQWWback to top mRNA from alignment at H-elongata_contig198333:889..1062+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig198333.5556.1 ID=mRNA_H-elongata_contig198333.5556.1|Name=mRNA_H-elongata_contig198333.5556.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig198333:889..1062+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig198333:889..1062+ >mRNA_H-elongata_contig198333.5556.1 ID=mRNA_H-elongata_contig198333.5556.1|Name=mRNA_H-elongata_contig198333.5556.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig198333:889..1062+ (Himanthalia elongata Himel1 dioecious)back to top |