mRNA_H-elongata_contig198235.5548.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198235.5548.1
Unique NamemRNA_H-elongata_contig198235.5548.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig198235.5548.1 vs. uniprot
Match: D7FI59_ECTSI (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI59_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 5.690e-12
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 1
Query:    1 GSSVDSYLPEDLSFSEMVGLGMNADEMAANPRLTKRLVQNLNAK 132
            G+SV SYLPEDLSFS++VG+GMN +EM +NPRLT  LVQNLN+K
Sbjct:  187 GASVASYLPEDLSFSKVVGVGMNDEEMKSNPRLTDTLVQNLNSK 230          
BLAST of mRNA_H-elongata_contig198235.5548.1 vs. uniprot
Match: A0A257B8V3_9BACT (Methyltransferase type 11 n=1 Tax=Chloracidobacterium sp. CP2_5A TaxID=2012633 RepID=A0A257B8V3_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 8.670e-9
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 1
Query:    4 SSVDSYLPEDLSFSEMVGLGMNADEMAANPRLTKRLVQNLNA 129
            SS  S+LPE++ + E+VG+GMNA E+AANPRLT+RLV +LNA
Sbjct:   60 SSWVSHLPEEVGYREVVGIGMNAAELAANPRLTRRLVHDLNA 101          
BLAST of mRNA_H-elongata_contig198235.5548.1 vs. uniprot
Match: UPI001D0C4222 (methyltransferase domain-containing protein n=1 Tax=Methylobacterium sp. W2 TaxID=2598107 RepID=UPI001D0C4222)

HSP 1 Score: 57.8 bits (138), Expect = 1.250e-8
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    4 SSVDSYLPEDLSFSEMVGLGMNADEMAANPRLTKRLVQNLNAKVCRPSKGLSCE 165
            SS  S+LPED++F+ ++G G+NA E+AANPRLT+  VQ+LNA+   P  G S +
Sbjct:   60 SSWVSHLPEDMTFARVIGHGLNAAELAANPRLTQHFVQDLNAEPHLPLDGASVD 113          
BLAST of mRNA_H-elongata_contig198235.5548.1 vs. uniprot
Match: UPI001B8BB56D (methyltransferase domain-containing protein n=1 Tax=Chloracidobacterium validum TaxID=2821543 RepID=UPI001B8BB56D)

HSP 1 Score: 57.0 bits (136), Expect = 2.360e-8
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    4 SSVDSYLPEDLSFSEMVGLGMNADEMAANPRLTKRLVQNLNAKVCRP 144
            SS  S+LPED+++ +++G+G+NA E+AANPRLT+  V +LNA  C P
Sbjct:   60 SSWVSHLPEDIAYRQVIGIGLNAAELAANPRLTQWFVHDLNANPCLP 106          
BLAST of mRNA_H-elongata_contig198235.5548.1 vs. uniprot
Match: UPI0019861360 (Methyltransferase domain-containing protein n=1 Tax=Rhizobacter sp. TaxID=1909292 RepID=UPI0019861360)

HSP 1 Score: 57.0 bits (136), Expect = 2.440e-8
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    4 SSVDSYLPEDLSFSEMVGLGMNADEMAANPRLTKRLVQNLNAKVCRP 144
            SS  S+LPED+ + E+VGLGMN +E+AANPRLTK +VQ+LN +   P
Sbjct:   61 SSWISHLPEDVVYREVVGLGMNREELAANPRLTKFVVQDLNREPLLP 107          
BLAST of mRNA_H-elongata_contig198235.5548.1 vs. uniprot
Match: A0A4Q3AJX5_9SPHN (Methyltransferase domain-containing protein n=1 Tax=Sphingomonadales bacterium TaxID=1978525 RepID=A0A4Q3AJX5_9SPHN)

HSP 1 Score: 56.6 bits (135), Expect = 3.260e-8
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    4 SSVDSYLPEDLSFSEMVGLGMNADEMAANPRLTKRLVQNLNA 129
            SS  S+LP+D  ++E+VG GMNADE+AANPRL +R VQ+LNA
Sbjct:   60 SSWVSHLPDDRLYAEIVGHGMNADELAANPRLDRRFVQDLNA 101          
BLAST of mRNA_H-elongata_contig198235.5548.1 vs. uniprot
Match: A0A7W1ZZY5_9BACT (Methyltransferase domain-containing protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W1ZZY5_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 3.400e-8
Identity = 25/42 (59.52%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    4 SSVDSYLPEDLSFSEMVGLGMNADEMAANPRLTKRLVQNLNA 129
            SS  S+LP D+++  + GLGMNA+E+AANPRLT+ ++QNLNA
Sbjct:   63 SSWISHLPNDVAYGRVAGLGMNAEELAANPRLTETIMQNLNA 104          
BLAST of mRNA_H-elongata_contig198235.5548.1 vs. uniprot
Match: K8ZC85_NANGC (Methyltransf_11 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZC85_NANGC)

HSP 1 Score: 57.4 bits (137), Expect = 3.600e-8
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 GSSVDSYLPEDLSFSEMVGLGMNADEMAANPRLTKRLVQNLNAKVCRPSKGL 156
            G+S  SYLP  LS S  VG+G+N +EMAANP LT R+VQ+LNA    P+  +
Sbjct:  159 GASAHSYLPPSLSPSRFVGVGVNEEEMAANPALTDRIVQDLNADFSLPASAV 210          
BLAST of mRNA_H-elongata_contig198235.5548.1 vs. uniprot
Match: A0A2S7XN44_9GAMM (SAM-dependent methyltransferase n=1 Tax=Chromatium okenii TaxID=61644 RepID=A0A2S7XN44_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 6.670e-8
Identity = 26/42 (61.90%), Postives = 36/42 (85.71%), Query Frame = 1
Query:    4 SSVDSYLPEDLSFSEMVGLGMNADEMAANPRLTKRLVQNLNA 129
            SS  ++LPE+L+ +E+VGLGMNA E+ ANPRLT+R+V +LNA
Sbjct:  245 SSWQTHLPEELALAELVGLGMNAAELDANPRLTERVVHDLNA 286          
BLAST of mRNA_H-elongata_contig198235.5548.1 vs. uniprot
Match: A0A5N6L6R6_9ROSI (Methyltransf_11 domain-containing protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6L6R6_9ROSI)

HSP 1 Score: 55.5 bits (132), Expect = 9.030e-8
Identity = 26/47 (55.32%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    4 SSVDSYLPEDLSFSEMVGLGMNADEMAANPRLTKRLVQNLNAKVCRP 144
            SS  S+LPE+++++E+VGLGMNA E+AANPRL + +VQ+LN +   P
Sbjct:   60 SSWVSHLPEEVAYAEVVGLGMNAAELAANPRLARTVVQSLNDQPALP 106          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198235.5548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI59_ECTSI5.690e-1272.73Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A257B8V3_9BACT8.670e-964.29Methyltransferase type 11 n=1 Tax=Chloracidobacter... [more]
UPI001D0C42221.250e-851.85methyltransferase domain-containing protein n=1 Ta... [more]
UPI001B8BB56D2.360e-853.19methyltransferase domain-containing protein n=1 Ta... [more]
UPI00198613602.440e-859.57Methyltransferase domain-containing protein n=1 Ta... [more]
A0A4Q3AJX5_9SPHN3.260e-864.29Methyltransferase domain-containing protein n=1 Ta... [more]
A0A7W1ZZY5_9BACT3.400e-859.52Methyltransferase domain-containing protein n=2 Ta... [more]
K8ZC85_NANGC3.600e-853.85Methyltransf_11 domain-containing protein n=3 Tax=... [more]
A0A2S7XN44_9GAMM6.670e-861.90SAM-dependent methyltransferase n=1 Tax=Chromatium... [more]
A0A5N6L6R6_9ROSI9.030e-855.32Methyltransf_11 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198235contigH-elongata_contig198235:849..1019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog2880.D7FI59
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2CYIA@1,2S4JX@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930119.667573-CDS-H-elongata_contig198235:848..10191622930119.667573-CDS-H-elongata_contig198235:848..1019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198235 849..1019 -
1691679288.3086333-CDS-H-elongata_contig198235:848..10191691679288.3086333-CDS-H-elongata_contig198235:848..1019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198235 849..1019 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198235.5548.1prot_H-elongata_contig198235.5548.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198235 849..1019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198235.5548.1

>prot_H-elongata_contig198235.5548.1 ID=prot_H-elongata_contig198235.5548.1|Name=mRNA_H-elongata_contig198235.5548.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
GSSVDSYLPEDLSFSEMVGLGMNADEMAANPRLTKRLVQNLNAKVCRPSK
GLSCEET
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mRNA from alignment at H-elongata_contig198235:849..1019-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198235.5548.1 ID=mRNA_H-elongata_contig198235.5548.1|Name=mRNA_H-elongata_contig198235.5548.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig198235:849..1019- (Himanthalia elongata Himel1 dioecious)
GGTTCGTCTGTGGACTCTTACCTTCCCGAGGACCTGTCATTCTCCGAGAT GGTCGGGTTGGGAATGAACGCCGACGAGATGGCGGCCAACCCGCGCCTCA CGAAACGCCTCGTCCAGAACCTAAACGCGAAGGTGTGTCGCCCCAGCAAA GGCTTGTCTTGCGAGGAAACG
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Coding sequence (CDS) from alignment at H-elongata_contig198235:849..1019-

>mRNA_H-elongata_contig198235.5548.1 ID=mRNA_H-elongata_contig198235.5548.1|Name=mRNA_H-elongata_contig198235.5548.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig198235:849..1019- (Himanthalia elongata Himel1 dioecious)
GGTTCGTCTGTGGACTCTTACCTTCCCGAGGACCTGTCATTCTCCGAGAT
GGTCGGGTTGGGAATGAACGCCGACGAGATGGCGGCCAACCCGCGCCTCA
CGAAACGCCTCGTCCAGAACCTAAACGCGAAGGTGTGTCGCCCCAGCAAA
GGCTTGTCTTGCGAGGAAACGGGTTCGTCTGTGGACTCTTACCTTCCCGA
GGACCTGTCATTCTCCGAGATGGTCGGGTTGGGAATGAACGCCGACGAGA
TGGCGGCCAACCCGCGCCTCACGAAACGCCTCGTCCAGAACCTAAACGCG
AAGGTGTGTCGCCCCAGCAAAGGCTTGTCTTGCGAGGAAACG
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