mRNA_H-elongata_contig198224.5547.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198224.5547.1
Unique NamemRNA_H-elongata_contig198224.5547.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig198224.5547.1 vs. uniprot
Match: UPI0018F37BD3 (sulfotransferase family protein n=1 Tax=Pseudosporangium sp. NEAU-24 TaxID=2785915 RepID=UPI0018F37BD3)

HSP 1 Score: 79.7 bits (195), Expect = 1.290e-16
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   37 HNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDVPFPRSNSRDTITNRIA 195
            HNA V+  VPA RLLEF VK GWEPLC FLGVPVPD PFPR+N      NR+A
Sbjct:  152 HNAAVRREVPAPRLLEFQVKQGWEPLCAFLGVPVPDEPFPRTNDSTEFRNRVA 204          
BLAST of mRNA_H-elongata_contig198224.5547.1 vs. uniprot
Match: UPI00109BF298 (uncharacterized protein LOC110252707 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BF298)

HSP 1 Score: 79.3 bits (194), Expect = 2.820e-16
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 1
Query:   31 IRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDVPFPRSNSRD 174
            ++HNARVKA +P D+LL ++VK GW+PLC FLGVPVPDVPFPR N +D
Sbjct:  152 LQHNARVKATIPRDKLLVYNVKQGWQPLCEFLGVPVPDVPFPRLNVKD 199          
BLAST of mRNA_H-elongata_contig198224.5547.1 vs. uniprot
Match: A0A8J3S6S3_PLARO (Sulfotransferase family protein n=2 Tax=Planobispora rosea TaxID=35762 RepID=A0A8J3S6S3_PLARO)

HSP 1 Score: 78.6 bits (192), Expect = 5.540e-16
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   34 RHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDVPFPRSNSRDTITNRIARCV 204
            RHNA V+A +PADRLL + V  GWEPLC FLGVPVPD PFPR+N  ++     AR +
Sbjct:  160 RHNAEVRAAIPADRLLVYRVGEGWEPLCAFLGVPVPDEPFPRANDSESFWTNFARTL 216          
BLAST of mRNA_H-elongata_contig198224.5547.1 vs. uniprot
Match: A0A183ANB6_9TREM (Uncharacterized protein n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183ANB6_9TREM)

HSP 1 Score: 79.0 bits (193), Expect = 5.930e-16
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   13 EAKADLIRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDVPFPRSNSRDTITNRIAR 198
            + K   +R N  V+  VP+DRLL F VK GWEPLC FLG P+PDVPFP  N R+T+  RI R
Sbjct:  177 QVKRAFVRRNEEVERTVPSDRLLVFQVKDGWEPLCRFLGKPIPDVPFPHVNDRETMKGRIRR 238          
BLAST of mRNA_H-elongata_contig198224.5547.1 vs. uniprot
Match: UPI000A2A9B8C (uncharacterized protein LOC110242367 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9B8C)

HSP 1 Score: 78.2 bits (191), Expect = 7.770e-16
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:   31 IRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDVPFPRSNSRDTI 180
            I HNARV + +P D+LL ++VK GWEPLC FLGVPVPDVPFPR N +D +
Sbjct:  152 IEHNARVNSTIPRDKLLVYNVKQGWEPLCEFLGVPVPDVPFPRLNVKDQL 201          
BLAST of mRNA_H-elongata_contig198224.5547.1 vs. uniprot
Match: A0A183AA35_9TREM (Uncharacterized protein n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183AA35_9TREM)

HSP 1 Score: 78.6 bits (192), Expect = 8.290e-16
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   19 KADLIRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDVPFPRSNSRDTITNRIAR 198
            K   +R N  V+  VPADRLL F VK GWEPLC FLG P+PDVPFP  N R T+  RI R
Sbjct:  179 KRAFVRRNEEVERTVPADRLLVFQVKDGWEPLCRFLGKPIPDVPFPHVNDRKTMKGRIRR 238          
BLAST of mRNA_H-elongata_contig198224.5547.1 vs. uniprot
Match: D8LU57_ECTSI (UEV domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU57_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.030e-15
Identity = 44/75 (58.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 MEEVEAKADLIRHNARVKAVVPADR---LLEFSVKSGWEPLCTFLGVPVPDVPFPRSNSRDTITNRIARCV-HAW 213
            MEE EAKAD +RHN  V A V AD    LLEFSV+ GW PLC FL V VPDVPFP+ NSR+ +  R+ R   H W
Sbjct:  326 MEEDEAKADYVRHNKEVLAHVGADNGRELLEFSVEQGWGPLCKFLDVSVPDVPFPKVNSREELKIRLNRFNRHGW 400          
BLAST of mRNA_H-elongata_contig198224.5547.1 vs. uniprot
Match: M5G920_DACPD (Uncharacterized protein n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5G920_DACPD)

HSP 1 Score: 78.2 bits (191), Expect = 1.040e-15
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   31 IRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDVPFPRSNSRDTITNRI 192
            +RHN  ++ +VP +RLLEF+VK GWEPLC FLGVPVPDVPFP +N   T+   I
Sbjct:  165 VRHNEFIRKIVPPERLLEFNVKEGWEPLCKFLGVPVPDVPFPHTNDSATVKANI 218          
BLAST of mRNA_H-elongata_contig198224.5547.1 vs. uniprot
Match: C5FQD9_ARTOC (Uncharacterized protein n=1 Tax=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) TaxID=554155 RepID=C5FQD9_ARTOC)

HSP 1 Score: 77.4 bits (189), Expect = 2.010e-15
Identity = 35/59 (59.32%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   34 RHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDVPFPRSNSRDTITNRIARCVHA 210
            +H   V+ VVPAD LLEF  K GWEPLC FLGVPVPDVP+PR N  D    R A+ + A
Sbjct:  174 KHYQMVRDVVPADNLLEFEAKDGWEPLCKFLGVPVPDVPYPRVNDTDNFWERFAKGIGA 232          
BLAST of mRNA_H-elongata_contig198224.5547.1 vs. uniprot
Match: A0A5B1LWX7_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides antri TaxID=2607659 RepID=A0A5B1LWX7_9ACTN)

HSP 1 Score: 73.6 bits (179), Expect = 2.430e-15
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1
Query:   13 EAKADLIRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDVPFPRSNSR 171
            EAKA   RHNA V+A VP DRL+E+S   GWEPLC  LG+PVPD PFPR N++
Sbjct:   25 EAKAAYERHNAHVRATVPPDRLVEWSPGDGWEPLCAALGLPVPDEPFPRVNTK 77          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198224.5547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0018F37BD31.290e-1667.92sulfotransferase family protein n=1 Tax=Pseudospor... [more]
UPI00109BF2982.820e-1668.75uncharacterized protein LOC110252707 n=1 Tax=Exaip... [more]
A0A8J3S6S3_PLARO5.540e-1659.65Sulfotransferase family protein n=2 Tax=Planobispo... [more]
A0A183ANB6_9TREM5.930e-1656.45Uncharacterized protein n=1 Tax=Echinostoma capron... [more]
UPI000A2A9B8C7.770e-1666.00uncharacterized protein LOC110242367 n=1 Tax=Exaip... [more]
A0A183AA35_9TREM8.290e-1660.00Uncharacterized protein n=1 Tax=Echinostoma capron... [more]
D8LU57_ECTSI1.030e-1558.67UEV domain-containing protein n=2 Tax=Ectocarpus T... [more]
M5G920_DACPD1.040e-1561.11Uncharacterized protein n=1 Tax=Dacryopinax primog... [more]
C5FQD9_ARTOC2.010e-1559.32Uncharacterized protein n=1 Tax=Arthroderma otae (... [more]
A0A5B1LWX7_9ACTN2.430e-1564.15Uncharacterized protein n=1 Tax=Nocardioides antri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198224contigH-elongata_contig198224:383..981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog2880.D8LU57
Preferred nameSTP22
KEGG koko:K12183
KEGG Pathwayko04144,map04144
KEGG ModuleM00409
GOsGO:0000813,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009898,GO:0009987,GO:0010008,GO:0010605,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016192,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0031090,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031410,GO:0031982,GO:0032182,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036452,GO:0042221,GO:0042493,GO:0042886,GO:0043130,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045324,GO:0046618,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080090,GO:0090150,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098796,GO:0098805,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1902914,GO:1902915,GO:1903320,GO:1903321,GO:1904669
EggNOG free text desc.Tumor susceptibility
EggNOG OGsKOG2391@1,KOG2391@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930119.6127756-CDS-H-elongata_contig198224:382..4571622930119.6127756-CDS-H-elongata_contig198224:382..457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198224 383..457 +
1691679288.2881026-CDS-H-elongata_contig198224:382..4571691679288.2881026-CDS-H-elongata_contig198224:382..457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198224 383..457 +
1622930119.6305997-CDS-H-elongata_contig198224:825..9811622930119.6305997-CDS-H-elongata_contig198224:825..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198224 826..981 +
1691679288.2988362-CDS-H-elongata_contig198224:825..9811691679288.2988362-CDS-H-elongata_contig198224:825..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198224 826..981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198224.5547.1prot_H-elongata_contig198224.5547.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198224 383..981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198224.5547.1

>prot_H-elongata_contig198224.5547.1 ID=prot_H-elongata_contig198224.5547.1|Name=mRNA_H-elongata_contig198224.5547.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MEEVEAKADLIRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDVP
FPRSNSRDTITNRIARCVHAWYSNVF*
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mRNA from alignment at H-elongata_contig198224:383..981+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198224.5547.1 ID=mRNA_H-elongata_contig198224.5547.1|Name=mRNA_H-elongata_contig198224.5547.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=599bp|location=Sequence derived from alignment at H-elongata_contig198224:383..981+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGAGGTGGAAGCAAAGGCGGACCTCATCCGCCACAACGCACGAGT GAAGGCCGTAGTGCCCGCCGATAGGGTGCGCGAAACCCTTCTCACCGCCC GAACCTCTTCTTCATTCCGCATAGCACATGTGTTGAAACCGTGAGACCTC GTTTGCTGTATGAACGGCCTTGTGAGGTCGAAATACAGACAACTGAAAAA GAAGGAAATCCGGTACCAAGGCTCTTTAGTGGAGAAAGTGATTTATCATA AATAAGTTGGTCCTCTGGTTGAAGCGGCCAGCGCATACCCCCCACTAGTT GTGGAACGTTATGGCTTAGGCCTAGGGCCACGTCGTTTTGGCTGCATCGC CCGCTACAGTTTCTTCAGGTCAGCAAACCACCCAACTTCCCGACCATTCG TTCCCCTCCCCTCTGTTACCCGAACGGATCGACGTATACGTAGCTCCTAG AGTTTTCGGTGAAGAGTGGTTGGGAGCCTCTGTGCACCTTCCTCGGCGTG CCTGTTCCAGACGTTCCCTTCCCGAGATCGAACTCTCGCGATACTATCAC GAACAGGATAGCAAGGTGCGTCCATGCGTGGTATTCTAATGTGTTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig198224:383..981+

>mRNA_H-elongata_contig198224.5547.1 ID=mRNA_H-elongata_contig198224.5547.1|Name=mRNA_H-elongata_contig198224.5547.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig198224:383..981+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGAGGTGGAAGCAAAGGCGGACCTCATCCGCCACAACGCACGAGT
GAAGGCCGTAGTGCCCGCCGATAGGATGGAAGAGGTGGAAGCAAAGGCGG
ACCTCATCCGCCACAACGCACGAGTGAAGGCCGTAGTGCCCGCCGATAGG
CTCCTAGAGTTTTCGGTGAAGAGTGGTTGGGAGCCTCTGTGCACCTTCCT
CGGCGTGCCTGTTCCAGACGTTCCCTTCCCGAGATCGAACTCTCGCGATA
CTATCACGAACAGGATAGCAAGGTGCGTCCATGCGTGGTATTCTAATGTG
TTTTAGCTCCTAGAGTTTTCGGTGAAGAGTGGTTGGGAGCCTCTGTGCAC
CTTCCTCGGCGTGCCTGTTCCAGACGTTCCCTTCCCGAGATCGAACTCTC
GCGATACTATCACGAACAGGATAGCAAGGTGCGTCCATGCGTGGTATTCT
AATGTGTTTTAG
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