mRNA_H-elongata_contig198112.5544.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198112.5544.1
Unique NamemRNA_H-elongata_contig198112.5544.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: A0A6H5K0G0_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.590e-27
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 METLGLRVEIFPDEVMPPGFKFFNETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDDWEFPRCSLRR 231
            ME  GL +EI PDEVMPPGFK F++ F+EEN DRY   LL+VHNNWI GH  K+ RFR  G+W V+ WEFP C  RR
Sbjct: 1401 MEQAGLNLEILPDEVMPPGFKAFDDAFLEENYDRYRDNLLMVHNNWIIGHDPKRDRFRKSGLWDVEGWEFPSCQRRR 1477          
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: D8LU02_ECTSI (Xylosyltransferase, family GT77 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU02_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.920e-20
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 METLGLRVEIFPDEVMPPGFKFFNETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDDWEFPRCSLRRSL 237
            M+  GL +++ P E M PG + F+ET+++ N      KLLIVHNNWI GH  K+ RFR  G+W+VDDWEFP C  RR+L
Sbjct:  457 MQEAGLALQLLPKEAMLPGNRGFDETYVKNNYALLQDKLLIVHNNWIVGHDPKRERFRMAGLWEVDDWEFPTCQ-RRNL 534          
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: UPI0018D5CC83 (UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D5CC83)

HSP 1 Score: 59.7 bits (143), Expect = 1.290e-8
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 1
Query:   16 LRVEIFPDEVMPPGFKFFNETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVD-DWEFP 213
            L+V +   +  P G  FFNET+  E  D      ++VHNNWI GH +K  RFR+  MW VD D +FP
Sbjct:  307 LQVRVLNWDRFPNGKLFFNETWRRERSD-----FVVVHNNWIVGHDTKVERFRNLNMWLVDPDMKFP 368          
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: I3SUY8_LOTJA (Nucleotid_trans domain-containing protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SUY8_LOTJA)

HSP 1 Score: 53.9 bits (128), Expect = 7.860e-8
Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   28 IFPDEVMPPGFKFF-NETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDD 201
            + P    P G  +F N+T+++E      GK +++HNN+I G + K  RFRDYG+W VDD
Sbjct:   11 LLPQPAFPTGGLYFKNKTWVKET----KGKHVVIHNNYIVGFEKKIKRFRDYGLWLVDD 65          
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: A0A1R3H270_COCAP (Glycosyltransferase n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3H270_COCAP)

HSP 1 Score: 56.2 bits (134), Expect = 1.640e-7
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    4 ETLG-LRVEIFPDEVMPPGFKFF-NETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDD 201
            +T G + + + P    P G  +F N+T+++E      GK +I+HNN+I G + K  RFRDYG+W VDD
Sbjct:  185 KTAGQVNLYLLPQTAFPTGGLYFKNQTWVQET----KGKHVIIHNNYITGFEKKIKRFRDYGLWLVDD 248          
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: A0A078I4Y3_BRANA (Glycosyltransferase n=11 Tax=Brassiceae TaxID=981071 RepID=A0A078I4Y3_BRANA)

HSP 1 Score: 55.8 bits (133), Expect = 2.910e-7
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   22 VEIFPDEVMPPGFKFF-NETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDDW 204
            V + P    P G  +F NET+++E      GK  I+HNN+I G+  K  RFRD+G+W VDD+
Sbjct:  279 VYLLPQTAFPSGGLYFTNETWVKET----KGKHAIIHNNYIIGYDEKMKRFRDFGLWLVDDY 336          
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: A0A7S3AMX4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AMX4_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 2.990e-7
Identity = 23/67 (34.33%), Postives = 37/67 (55.22%), Query Frame = 1
Query:    1 METLGLRVEIFPDEVMPPGFKFFNETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDD 201
            +    L + + P E  P G+++ ++ +        V    +VHNNWIKGH++K  RFR +GMW  +D
Sbjct:   33 LRETNLPLRVLPCEKFPNGYRYASDAWRAAQRRPPV----LVHNNWIKGHEAKMKRFRAWGMWLAND 95          
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: A0A438DUB3_VITVI (UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DUB3_VITVI)

HSP 1 Score: 52.4 bits (124), Expect = 3.400e-7
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   16 LRVEIF--PDEVMPPGFKFF-NETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDDW 204
            L+V+++  P    P G  +F N+T+++E    +V    I+HNN+I G + K  RFRD+G+W VDD+
Sbjct:    8 LQVDLYLLPQVAFPTGGLYFKNQTWVQETKGLHV----IIHNNYITGFEKKIKRFRDFGLWLVDDY 69          
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: A0A1R3KN64_9ROSI (Reticulon n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3KN64_9ROSI)

HSP 1 Score: 55.5 bits (132), Expect = 3.810e-7
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   28 IFPDEVMPPGFKFF-NETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDD 201
            + P    P G  +F N+T+++E      GK +I+HNN+I G + K  RFRDYG+W VDD
Sbjct:  249 LLPQTAFPTGGLYFKNQTWVQET----KGKHVIIHNNYITGFEKKIKRFRDYGLWLVDD 303          
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: G8A1U6_MEDTR (Glycosyltransferase n=1 Tax=Medicago truncatula TaxID=3880 RepID=G8A1U6_MEDTR)

HSP 1 Score: 55.5 bits (132), Expect = 4.030e-7
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 1
Query:   13 GLRVEIFPDEVMPPGFKFF-NETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDD 201
            G+ + + P    P G  +F N+T+++E      GK +I+HNN+I G + K  RFRDYG+W VD+
Sbjct:  288 GVDMYLLPQSAFPTGGLYFKNKTWVKET----KGKHVIIHNNYIVGFEKKIKRFRDYGLWLVDE 347          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0G0_9PHAE1.590e-2762.34Nucleotid_trans domain-containing protein n=1 Tax=... [more]
D8LU02_ECTSI2.920e-2051.90Xylosyltransferase, family GT77 n=1 Tax=Ectocarpus... [more]
UPI0018D5CC831.290e-844.78UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransfera... [more]
I3SUY8_LOTJA7.860e-842.37Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A1R3H270_COCAP1.640e-741.18Glycosyltransferase n=1 Tax=Corchorus capsularis T... [more]
A0A078I4Y3_BRANA2.910e-743.55Glycosyltransferase n=11 Tax=Brassiceae TaxID=9810... [more]
A0A7S3AMX4_9EUKA2.990e-734.33Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A438DUB3_VITVI3.400e-739.39UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransfera... [more]
A0A1R3KN64_9ROSI3.810e-744.07Reticulon n=1 Tax=Corchorus olitorius TaxID=93759 ... [more]
G8A1U6_MEDTR4.030e-740.63Glycosyltransferase n=1 Tax=Medicago truncatula Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198112contigH-elongata_contig198112:422..658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.7e-16
Seed eggNOG ortholog2880.D8LU02
KEGG koko:K11714,ko:K20784
KEGG Pathwayko00514,map00514
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008378,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009664,GO:0009832,GO:0009856,GO:0009987,GO:0010306,GO:0010383,GO:0010393,GO:0010396,GO:0012505,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0016763,GO:0017144,GO:0019538,GO:0022414,GO:0032501,GO:0032502,GO:0033692,GO:0034637,GO:0034645,GO:0035250,GO:0035252,GO:0036211,GO:0042285,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044706,GO:0045229,GO:0045488,GO:0045489,GO:0048856,GO:0048868,GO:0051704,GO:0052325,GO:0052546,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.rhamnogalacturonan II biosynthetic process
EggNOG OGs28KPY@1,2QT5X@2759
COG Functional cat.M
CAZyGT77
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionXylosyltransferase, family GT77
Ec32 orthologEc-12_003620.1
Exons1
Model size237
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930119.4902878-CDS-H-elongata_contig198112:421..6581622930119.4902878-CDS-H-elongata_contig198112:421..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198112 422..658 -
1691679288.2328842-CDS-H-elongata_contig198112:421..6581691679288.2328842-CDS-H-elongata_contig198112:421..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198112 422..658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198112.5544.1prot_H-elongata_contig198112.5544.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198112 422..658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198112.5544.1

>prot_H-elongata_contig198112.5544.1 ID=prot_H-elongata_contig198112.5544.1|Name=mRNA_H-elongata_contig198112.5544.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
METLGLRVEIFPDEVMPPGFKFFNETFMEENGDRYVGKLLIVHNNWIKGH
QSKKIRFRDYGMWQVDDWEFPRCSLRRSL
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mRNA from alignment at H-elongata_contig198112:422..658-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198112.5544.1 ID=mRNA_H-elongata_contig198112.5544.1|Name=mRNA_H-elongata_contig198112.5544.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig198112:422..658- (Himanthalia elongata Himel1 dioecious)
ATGGAGACCCTGGGGCTCCGGGTCGAGATTTTCCCGGACGAGGTCATGCC TCCGGGGTTCAAGTTCTTCAACGAGACTTTTATGGAGGAAAACGGCGACC GTTACGTGGGAAAGCTGCTGATTGTTCACAACAACTGGATCAAAGGCCAC CAGTCCAAGAAGATAAGGTTTCGAGACTACGGCATGTGGCAGGTGGACGA CTGGGAGTTCCCCAGGTGTTCACTGAGGCGTTCCTTG
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Coding sequence (CDS) from alignment at H-elongata_contig198112:422..658-

>mRNA_H-elongata_contig198112.5544.1 ID=mRNA_H-elongata_contig198112.5544.1|Name=mRNA_H-elongata_contig198112.5544.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig198112:422..658- (Himanthalia elongata Himel1 dioecious)
ATGGAGACCCTGGGGCTCCGGGTCGAGATTTTCCCGGACGAGGTCATGCC
TCCGGGGTTCAAGTTCTTCAACGAGACTTTTATGGAGGAAAACGGCGACC
GTTACGTGGGAAAGCTGCTGATTGTTCACAACAACTGGATCAAAGGCCAC
CAGTCCAAGAAGATAAGGTTTCGAGACTACGGCATGTGGCAGGTGGACGA
CTGGGAGTTCCCCAGGTGTTCACTGAGGCGTTCCTTGATGGAGACCCTGG
GGCTCCGGGTCGAGATTTTCCCGGACGAGGTCATGCCTCCGGGGTTCAAG
TTCTTCAACGAGACTTTTATGGAGGAAAACGGCGACCGTTACGTGGGAAA
GCTGCTGATTGTTCACAACAACTGGATCAAAGGCCACCAGTCCAAGAAGA
TAAGGTTTCGAGACTACGGCATGTGGCAGGTGGACGACTGGGAGTTCCCC
AGGTGTTCACTGAGGCGTTCCTTG
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