mRNA_H-elongata_contig198112.5544.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: A0A6H5K0G0_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G0_9PHAE) HSP 1 Score: 113 bits (283), Expect = 1.590e-27 Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 1 METLGLRVEIFPDEVMPPGFKFFNETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDDWEFPRCSLRR 231
ME GL +EI PDEVMPPGFK F++ F+EEN DRY LL+VHNNWI GH K+ RFR G+W V+ WEFP C RR
Sbjct: 1401 MEQAGLNLEILPDEVMPPGFKAFDDAFLEENYDRYRDNLLMVHNNWIIGHDPKRDRFRKSGLWDVEGWEFPSCQRRR 1477
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: D8LU02_ECTSI (Xylosyltransferase, family GT77 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU02_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 2.920e-20 Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 1 METLGLRVEIFPDEVMPPGFKFFNETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDDWEFPRCSLRRSL 237
M+ GL +++ P E M PG + F+ET+++ N KLLIVHNNWI GH K+ RFR G+W+VDDWEFP C RR+L
Sbjct: 457 MQEAGLALQLLPKEAMLPGNRGFDETYVKNNYALLQDKLLIVHNNWIVGHDPKRERFRMAGLWEVDDWEFPTCQ-RRNL 534
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: UPI0018D5CC83 (UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D5CC83) HSP 1 Score: 59.7 bits (143), Expect = 1.290e-8 Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 1
Query: 16 LRVEIFPDEVMPPGFKFFNETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVD-DWEFP 213
L+V + + P G FFNET+ E D ++VHNNWI GH +K RFR+ MW VD D +FP
Sbjct: 307 LQVRVLNWDRFPNGKLFFNETWRRERSD-----FVVVHNNWIVGHDTKVERFRNLNMWLVDPDMKFP 368
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: I3SUY8_LOTJA (Nucleotid_trans domain-containing protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SUY8_LOTJA) HSP 1 Score: 53.9 bits (128), Expect = 7.860e-8 Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 28 IFPDEVMPPGFKFF-NETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDD 201
+ P P G +F N+T+++E GK +++HNN+I G + K RFRDYG+W VDD
Sbjct: 11 LLPQPAFPTGGLYFKNKTWVKET----KGKHVVIHNNYIVGFEKKIKRFRDYGLWLVDD 65
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: A0A1R3H270_COCAP (Glycosyltransferase n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3H270_COCAP) HSP 1 Score: 56.2 bits (134), Expect = 1.640e-7 Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1
Query: 4 ETLG-LRVEIFPDEVMPPGFKFF-NETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDD 201
+T G + + + P P G +F N+T+++E GK +I+HNN+I G + K RFRDYG+W VDD
Sbjct: 185 KTAGQVNLYLLPQTAFPTGGLYFKNQTWVQET----KGKHVIIHNNYITGFEKKIKRFRDYGLWLVDD 248
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: A0A078I4Y3_BRANA (Glycosyltransferase n=11 Tax=Brassiceae TaxID=981071 RepID=A0A078I4Y3_BRANA) HSP 1 Score: 55.8 bits (133), Expect = 2.910e-7 Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1
Query: 22 VEIFPDEVMPPGFKFF-NETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDDW 204
V + P P G +F NET+++E GK I+HNN+I G+ K RFRD+G+W VDD+
Sbjct: 279 VYLLPQTAFPSGGLYFTNETWVKET----KGKHAIIHNNYIIGYDEKMKRFRDFGLWLVDDY 336
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: A0A7S3AMX4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AMX4_9EUKA) HSP 1 Score: 53.1 bits (126), Expect = 2.990e-7 Identity = 23/67 (34.33%), Postives = 37/67 (55.22%), Query Frame = 1
Query: 1 METLGLRVEIFPDEVMPPGFKFFNETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDD 201
+ L + + P E P G+++ ++ + V +VHNNWIKGH++K RFR +GMW +D
Sbjct: 33 LRETNLPLRVLPCEKFPNGYRYASDAWRAAQRRPPV----LVHNNWIKGHEAKMKRFRAWGMWLAND 95
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: A0A438DUB3_VITVI (UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DUB3_VITVI) HSP 1 Score: 52.4 bits (124), Expect = 3.400e-7 Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 1
Query: 16 LRVEIF--PDEVMPPGFKFF-NETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDDW 204
L+V+++ P P G +F N+T+++E +V I+HNN+I G + K RFRD+G+W VDD+
Sbjct: 8 LQVDLYLLPQVAFPTGGLYFKNQTWVQETKGLHV----IIHNNYITGFEKKIKRFRDFGLWLVDDY 69
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: A0A1R3KN64_9ROSI (Reticulon n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3KN64_9ROSI) HSP 1 Score: 55.5 bits (132), Expect = 3.810e-7 Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 28 IFPDEVMPPGFKFF-NETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDD 201
+ P P G +F N+T+++E GK +I+HNN+I G + K RFRDYG+W VDD
Sbjct: 249 LLPQTAFPTGGLYFKNQTWVQET----KGKHVIIHNNYITGFEKKIKRFRDYGLWLVDD 303
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Match: G8A1U6_MEDTR (Glycosyltransferase n=1 Tax=Medicago truncatula TaxID=3880 RepID=G8A1U6_MEDTR) HSP 1 Score: 55.5 bits (132), Expect = 4.030e-7 Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 1
Query: 13 GLRVEIFPDEVMPPGFKFF-NETFMEENGDRYVGKLLIVHNNWIKGHQSKKIRFRDYGMWQVDD 201
G+ + + P P G +F N+T+++E GK +I+HNN+I G + K RFRDYG+W VD+
Sbjct: 288 GVDMYLLPQSAFPTGGLYFKNKTWVKET----KGKHVIIHNNYIVGFEKKIKRFRDYGLWLVDE 347 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198112.5544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig198112.5544.1 >prot_H-elongata_contig198112.5544.1 ID=prot_H-elongata_contig198112.5544.1|Name=mRNA_H-elongata_contig198112.5544.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp METLGLRVEIFPDEVMPPGFKFFNETFMEENGDRYVGKLLIVHNNWIKGHback to top mRNA from alignment at H-elongata_contig198112:422..658- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig198112.5544.1 ID=mRNA_H-elongata_contig198112.5544.1|Name=mRNA_H-elongata_contig198112.5544.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig198112:422..658- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig198112:422..658- >mRNA_H-elongata_contig198112.5544.1 ID=mRNA_H-elongata_contig198112.5544.1|Name=mRNA_H-elongata_contig198112.5544.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig198112:422..658- (Himanthalia elongata Himel1 dioecious)back to top |