mRNA_H-elongata_contig19796.5538.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: A0A6H5JL55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE) HSP 1 Score: 145 bits (367), Expect = 4.160e-38 Identity = 67/87 (77.01%), Postives = 79/87 (90.80%), Query Frame = 1
Query: 1 GMSSDDPPDSKWIKMEKINRKNGKK-KPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRL 258
G+S+DDPPDS+WI +EK +RK GKK PMG+CLIGIQI+P++KAEAQP G+GR EPNDSPFLPPP GRLQFGWNPIS+I+QLLGPRL
Sbjct: 2054 GISNDDPPDSQWISLEKTDRKTGKKVTPMGKCLIGIQIYPLDKAEAQPAGLGRAEPNDSPFLPPPNGRLQFGWNPISMISQLLGPRL 2140
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: D8LF87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF87_ECTSI) HSP 1 Score: 121 bits (303), Expect = 1.770e-29 Identity = 58/121 (47.93%), Postives = 84/121 (69.42%), Query Frame = 1
Query: 1 GMSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCC-ILCGCLCCLVFILSVMFLQPMWTFLINLAFSL 360
G+ DDP +S W+ ME+ N + G+K+ MG+CL+G+QI+P+EKAE QPVG GR +PN PFLPPP GRL+F NP + ++L GP++C I C C CC++ IL +++ + L+ A SL
Sbjct: 2108 GLWDDDPDESYWLNMERTNYETGQKEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVC-CCVISILLLVYFSGFFNLLLTFALSL 2227
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: A0A7S3XX73_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX73_HETAK) HSP 1 Score: 109 bits (272), Expect = 4.920e-28 Identity = 51/119 (42.86%), Postives = 77/119 (64.71%), Query Frame = 1
Query: 1 GMSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQPMWTFLINLAFS 357
G+ DPP+SKW+ +EK + G K+ MG+ + I I+P ++A AQPVG GR PN +P+ PPP GRL+F NP S+++QLLGP++ C + CL ++F L ++ P +I L F+
Sbjct: 38 GLGDSDPPNSKWMTLEKTDHNTGTKQQMGKVCLSISIYPKDQANAQPVGFGRSAPNMNPYCPPPVGRLKFSLNPFSMLSQLLGPKITCYVICCLFLVLFALLSIYCSPFLNIVIALVFN 156
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: A0A6G0WJX2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJX2_9STRA) HSP 1 Score: 117 bits (292), Expect = 5.330e-28 Identity = 55/114 (48.25%), Postives = 78/114 (68.42%), Query Frame = 1
Query: 1 GMSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQPMWTFLI 342
G+ +P DS WIKME++NR G K+PMG I +++ P+EKA+ Q VG GR +PN++PFLPPP+GRL+F NP + QLLGP++C CLCC+ ++++ FL P LI
Sbjct: 1670 GLWDHNPTDSTWIKMERLNRATGVKEPMGAVCISMELVPIEKAKIQSVGFGRSDPNNNPFLPPPSGRLKFSMNPFYVFNQLLGPKICRRFMCCLCCVAVMVAMYFLGPFINILI 1783
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: A0A067CD61_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CD61_SAPPC) HSP 1 Score: 116 bits (291), Expect = 7.270e-28 Identity = 52/108 (48.15%), Postives = 77/108 (71.30%), Query Frame = 1
Query: 1 GMSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQP 324
G+ DP DS WIKME++NR+ G+K+ MG I +++ P++KA+ Q VG GR +PN+SPFLPPP GRL+F NP + +LLGP++C + CLCC++ ++ + FL P
Sbjct: 1643 GLWDTDPTDSTWIKMERLNRETGQKEAMGALCISMELVPIDKAKVQTVGFGRSDPNNSPFLPPPAGRLKFSMNPFYVFNELLGPKICHRVMCCLCCILIMVLMYFLGP 1750
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: K3X523_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X523_GLOUD) HSP 1 Score: 115 bits (287), Expect = 2.460e-27 Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 1
Query: 13 DDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQPMWTFLINLA 351
DDPPD+KWIK+E ++ K + MG+ + +++ P+EKA+ QPVG GR PN+SP+LPPP GRL F NP + LLGP +C + CLCC+ F++ + FL P INLA
Sbjct: 999 DDPPDAKWIKLESVDHKTHTRNYMGEVCVSMEVVPMEKAKQQPVGQGRSAPNNSPYLPPPAGRLSFSLNPFKVFNDLLGPSICNRIMCCLCCVAFMVLIYFLAPF----INLA 1107
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: A0A6A5AKT2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AKT2_9STRA) HSP 1 Score: 114 bits (285), Expect = 3.220e-27 Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 1 GMSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQPMWTFLINLA 351
G+ DP DS WIKME++NR+ K+PMG I +++ PVEKA+ Q VG GR +PN++PFLPPP GRL+F NP + +LLGP +C + CLC + + ++ FL P LI LA
Sbjct: 444 GLWDTDPTDSTWIKMERLNRETNVKEPMGAVCISMELVPVEKAKIQAVGFGRSDPNNTPFLPPPAGRLKFSMNPFYVFNELLGPAICRKVMCCLCLVAIMAAMYFLGPFMNLLIVLA 560
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: A0A397C8F1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C8F1_9STRA) HSP 1 Score: 114 bits (285), Expect = 4.480e-27 Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 1 GMSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQPMWTFLINLA 351
G+ DP DS WIKME++NR+ K+PMG I +++ PVEKA+ Q VG GR +PN++PFLPPP GRL+F NP + +LLGP +C + CLC + + ++ FL P LI LA
Sbjct: 698 GLWDTDPTDSTWIKMERLNRETNVKEPMGAVCISMELVPVEKAKIQAVGFGRSDPNNTPFLPPPAGRLKFSMNPFYVFNELLGPAICHKVMCCLCLVAIMAAMYFLGPFMNLLIVLA 814
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: W4GKQ4_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GKQ4_9STRA) HSP 1 Score: 114 bits (285), Expect = 4.690e-27 Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 1 GMSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQPMWTFLINLA 351
G+ DP DS WIKME++NR+ K+PMG I +++ PVEKA+ Q VG GR +PN++PFLPPP GRL+F NP + +LLGP +C + CLC + + ++ FL P LI LA
Sbjct: 1678 GLWDTDPTDSTWIKMERLNRETNVKEPMGAVCISMELVPVEKAKIQAVGFGRSDPNNTPFLPPPAGRLKFSMNPFYVFNELLGPAICRKVMCCLCLVAIMAAMYFLGPFMNLLIVLA 1794
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: A0A2D4BI12_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BI12_PYTIN) HSP 1 Score: 114 bits (284), Expect = 6.370e-27 Identity = 53/113 (46.90%), Postives = 76/113 (67.26%), Query Frame = 1
Query: 13 DDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQPMWTFLINLA 351
+DPPD KW+K+E+++ K K++ MG+ + +++ P EKA+ QPVG GR+ PN SP+LPPP GRL F NP + LLGP +C + CLCC+ F++ + FL P INLA
Sbjct: 1503 EDPPDCKWLKLERVDHKTQKREYMGEVCVSMELVPSEKAKQQPVGQGRQSPNHSPYLPPPAGRLSFSLNPFKVFNDLLGPSICNRILCCLCCVAFMVIIYFLAPF----INLA 1611 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19796.5538.1 >prot_H-elongata_contig19796.5538.1 ID=prot_H-elongata_contig19796.5538.1|Name=mRNA_H-elongata_contig19796.5538.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp MSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGback to top mRNA from alignment at H-elongata_contig19796:3509..4793+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19796.5538.1 ID=mRNA_H-elongata_contig19796.5538.1|Name=mRNA_H-elongata_contig19796.5538.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1285bp|location=Sequence derived from alignment at H-elongata_contig19796:3509..4793+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19796:3509..4793+ >mRNA_H-elongata_contig19796.5538.1 ID=mRNA_H-elongata_contig19796.5538.1|Name=mRNA_H-elongata_contig19796.5538.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig19796:3509..4793+ (Himanthalia elongata Himel1 dioecious)back to top |