mRNA_H-elongata_contig19796.5538.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19796.5538.1
Unique NamemRNA_H-elongata_contig19796.5538.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: A0A6H5JL55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 4.160e-38
Identity = 67/87 (77.01%), Postives = 79/87 (90.80%), Query Frame = 1
Query:    1 GMSSDDPPDSKWIKMEKINRKNGKK-KPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRL 258
            G+S+DDPPDS+WI +EK +RK GKK  PMG+CLIGIQI+P++KAEAQP G+GR EPNDSPFLPPP GRLQFGWNPIS+I+QLLGPRL
Sbjct: 2054 GISNDDPPDSQWISLEKTDRKTGKKVTPMGKCLIGIQIYPLDKAEAQPAGLGRAEPNDSPFLPPPNGRLQFGWNPISMISQLLGPRL 2140          
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: D8LF87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF87_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.770e-29
Identity = 58/121 (47.93%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    1 GMSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCC-ILCGCLCCLVFILSVMFLQPMWTFLINLAFSL 360
            G+  DDP +S W+ ME+ N + G+K+ MG+CL+G+QI+P+EKAE QPVG GR +PN  PFLPPP GRL+F  NP  + ++L GP++C  I C C CC++ IL +++    +  L+  A SL
Sbjct: 2108 GLWDDDPDESYWLNMERTNYETGQKEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVC-CCVISILLLVYFSGFFNLLLTFALSL 2227          
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: A0A7S3XX73_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX73_HETAK)

HSP 1 Score: 109 bits (272), Expect = 4.920e-28
Identity = 51/119 (42.86%), Postives = 77/119 (64.71%), Query Frame = 1
Query:    1 GMSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQPMWTFLINLAFS 357
            G+   DPP+SKW+ +EK +   G K+ MG+  + I I+P ++A AQPVG GR  PN +P+ PPP GRL+F  NP S+++QLLGP++ C +  CL  ++F L  ++  P    +I L F+
Sbjct:   38 GLGDSDPPNSKWMTLEKTDHNTGTKQQMGKVCLSISIYPKDQANAQPVGFGRSAPNMNPYCPPPVGRLKFSLNPFSMLSQLLGPKITCYVICCLFLVLFALLSIYCSPFLNIVIALVFN 156          
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: A0A6G0WJX2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJX2_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.330e-28
Identity = 55/114 (48.25%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 GMSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQPMWTFLI 342
            G+   +P DS WIKME++NR  G K+PMG   I +++ P+EKA+ Q VG GR +PN++PFLPPP+GRL+F  NP  +  QLLGP++C     CLCC+  ++++ FL P    LI
Sbjct: 1670 GLWDHNPTDSTWIKMERLNRATGVKEPMGAVCISMELVPIEKAKIQSVGFGRSDPNNNPFLPPPSGRLKFSMNPFYVFNQLLGPKICRRFMCCLCCVAVMVAMYFLGPFINILI 1783          
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: A0A067CD61_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CD61_SAPPC)

HSP 1 Score: 116 bits (291), Expect = 7.270e-28
Identity = 52/108 (48.15%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 GMSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQP 324
            G+   DP DS WIKME++NR+ G+K+ MG   I +++ P++KA+ Q VG GR +PN+SPFLPPP GRL+F  NP  +  +LLGP++C  +  CLCC++ ++ + FL P
Sbjct: 1643 GLWDTDPTDSTWIKMERLNRETGQKEAMGALCISMELVPIDKAKVQTVGFGRSDPNNSPFLPPPAGRLKFSMNPFYVFNELLGPKICHRVMCCLCCILIMVLMYFLGP 1750          
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: K3X523_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X523_GLOUD)

HSP 1 Score: 115 bits (287), Expect = 2.460e-27
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 1
Query:   13 DDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQPMWTFLINLA 351
            DDPPD+KWIK+E ++ K   +  MG+  + +++ P+EKA+ QPVG GR  PN+SP+LPPP GRL F  NP  +   LLGP +C  +  CLCC+ F++ + FL P     INLA
Sbjct:  999 DDPPDAKWIKLESVDHKTHTRNYMGEVCVSMEVVPMEKAKQQPVGQGRSAPNNSPYLPPPAGRLSFSLNPFKVFNDLLGPSICNRIMCCLCCVAFMVLIYFLAPF----INLA 1107          
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: A0A6A5AKT2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AKT2_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.220e-27
Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 GMSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQPMWTFLINLA 351
            G+   DP DS WIKME++NR+   K+PMG   I +++ PVEKA+ Q VG GR +PN++PFLPPP GRL+F  NP  +  +LLGP +C  +  CLC +  + ++ FL P    LI LA
Sbjct:  444 GLWDTDPTDSTWIKMERLNRETNVKEPMGAVCISMELVPVEKAKIQAVGFGRSDPNNTPFLPPPAGRLKFSMNPFYVFNELLGPAICRKVMCCLCLVAIMAAMYFLGPFMNLLIVLA 560          
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: A0A397C8F1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C8F1_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.480e-27
Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 GMSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQPMWTFLINLA 351
            G+   DP DS WIKME++NR+   K+PMG   I +++ PVEKA+ Q VG GR +PN++PFLPPP GRL+F  NP  +  +LLGP +C  +  CLC +  + ++ FL P    LI LA
Sbjct:  698 GLWDTDPTDSTWIKMERLNRETNVKEPMGAVCISMELVPVEKAKIQAVGFGRSDPNNTPFLPPPAGRLKFSMNPFYVFNELLGPAICHKVMCCLCLVAIMAAMYFLGPFMNLLIVLA 814          
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: W4GKQ4_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GKQ4_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.690e-27
Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 GMSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQPMWTFLINLA 351
            G+   DP DS WIKME++NR+   K+PMG   I +++ PVEKA+ Q VG GR +PN++PFLPPP GRL+F  NP  +  +LLGP +C  +  CLC +  + ++ FL P    LI LA
Sbjct: 1678 GLWDTDPTDSTWIKMERLNRETNVKEPMGAVCISMELVPVEKAKIQAVGFGRSDPNNTPFLPPPAGRLKFSMNPFYVFNELLGPAICRKVMCCLCLVAIMAAMYFLGPFMNLLIVLA 1794          
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Match: A0A2D4BI12_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BI12_PYTIN)

HSP 1 Score: 114 bits (284), Expect = 6.370e-27
Identity = 53/113 (46.90%), Postives = 76/113 (67.26%), Query Frame = 1
Query:   13 DDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMGRKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFILSVMFLQPMWTFLINLA 351
            +DPPD KW+K+E+++ K  K++ MG+  + +++ P EKA+ QPVG GR+ PN SP+LPPP GRL F  NP  +   LLGP +C  +  CLCC+ F++ + FL P     INLA
Sbjct: 1503 EDPPDCKWLKLERVDHKTQKREYMGEVCVSMELVPSEKAKQQPVGQGRQSPNHSPYLPPPAGRLSFSLNPFKVFNDLLGPSICNRILCCLCCVAFMVIIYFLAPF----INLA 1611          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19796.5538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JL55_9PHAE4.160e-3877.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF87_ECTSI1.770e-2947.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XX73_HETAK4.920e-2842.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0WJX2_9STRA5.330e-2848.25Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067CD61_SAPPC7.270e-2848.15Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
K3X523_GLOUD2.460e-2747.79Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6A5AKT2_9STRA3.220e-2747.86Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397C8F1_9STRA4.480e-2747.86Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4GKQ4_9STRA4.690e-2747.86Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
A0A2D4BI12_PYTIN6.370e-2746.90Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19796contigH-elongata_contig19796:3509..4793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue8.8e-25
Seed eggNOG ortholog2880.D8LF87
KEGG koko:K19949,ko:K22125,ko:K22127
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1030@1,KOG1030@2759,KOG1326@1,KOG1326@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19796.5538.1prot_H-elongata_contig19796.5538.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19796 3512..4793 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930118.439321-UTR-H-elongata_contig19796:3508..35111622930118.439321-UTR-H-elongata_contig19796:3508..3511Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19796 3509..3511 +
1691679287.7643847-UTR-H-elongata_contig19796:3508..35111691679287.7643847-UTR-H-elongata_contig19796:3508..3511Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19796 3509..3511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930118.4538085-CDS-H-elongata_contig19796:3511..35831622930118.4538085-CDS-H-elongata_contig19796:3511..3583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19796 3512..3583 +
1691679287.7754018-CDS-H-elongata_contig19796:3511..35831691679287.7754018-CDS-H-elongata_contig19796:3511..3583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19796 3512..3583 +
1622930118.4660769-CDS-H-elongata_contig19796:4505..47931622930118.4660769-CDS-H-elongata_contig19796:4505..4793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19796 4506..4793 +
1691679287.7834687-CDS-H-elongata_contig19796:4505..47931691679287.7834687-CDS-H-elongata_contig19796:4505..4793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19796 4506..4793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19796.5538.1

>prot_H-elongata_contig19796.5538.1 ID=prot_H-elongata_contig19796.5538.1|Name=mRNA_H-elongata_contig19796.5538.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MSSDDPPDSKWIKMEKINRKNGKKKPMGQCLIGIQIFPVEKAEAQPVGMG
RKEPNDSPFLPPPTGRLQFGWNPISIIAQLLGPRLCCILCGCLCCLVFIL
SVMFLQPMWTFLINLAFSL*
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mRNA from alignment at H-elongata_contig19796:3509..4793+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19796.5538.1 ID=mRNA_H-elongata_contig19796.5538.1|Name=mRNA_H-elongata_contig19796.5538.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1285bp|location=Sequence derived from alignment at H-elongata_contig19796:3509..4793+ (Himanthalia elongata Himel1 dioecious)
GGGATGAGCTCGGACGACCCACCGGACTCCAAGTGGATAAAGATGGAGAA GATCAACAGAAAAAACGGCAAAAAGGTTCGCGTCTAATACTAATATTAAT ATATAATAGTAGTAATAGTACTAGTATCGTATTTTAGGAAGCTATCATGT CTCGGTATATCGTGTGTATATCGTCCAATGCGCTTGTTTTATACACTCTT CCTCTTGTTATTGCGCCTTCAGGCCACTTAAAACTTAAAGGAGAGAAGCT TTAATGATAATGAGGCTTTTTTCTCTCCCCTCCCCCCCCCCCACCCCTCC CCCCTGGGTACCGAGACATTTCACCGTCATACCTTTGAGGTGTAAGATGC TATATACGTGTTGCGGCATGGAGCTGTAAGATGCTGTATACGTGTTGCGA GTTTTCGCTGGCCACACTGCGTTTACGGCACCAAACCGGAATTGCCATGG GTTGATGGTTGATTGGACACACCGGGAAACTAACTAAATATTGCACATTC AGCAAGCGTTATCGTTATCGACTATATTTCGAATATAACAAGGAGACTTT GATATCTGCGCGAACGCCTAAATACCATACAAACACACACACGCTTACAC ACATACACATACAACGGTGTATGTATGATACACTCGGTCTATAATTGAAT GATTAGTCCTAGCGGAGTAATCTCATCAGTCTGTAGTTGCCCGAGGGCTT TCCAACAATCTTTTGTTCAGCAGGCATTTTATATCATGTGACGTTTCATC CATTGAGGGAGATACGAGAGAGAAGACTCTTCGAACGAGACATCTGAGCT TGCAGGACACGCTGCATGAAAAATTCGTGTAGCGTAAATACAACTCCCTC CGCCCCTGCCAGGCTGGTATCTGTGATGACTTATGATGACTTATGATGAC TTACGGTGAGTTTAATAATACGATTTTTACCGAGACCCCTCTCCATCTGC ATTTTGTGCCGTGCTTCTTGACGCTTTCGTGGCCTCCTTCTCACTAGAAA CCCATGGGACAGTGCCTCATCGGTATCCAGATATTCCCGGTGGAGAAGGC AGAAGCGCAGCCGGTGGGCATGGGCAGGAAGGAGCCGAACGACTCTCCCT TCTTGCCCCCGCCGACTGGCCGCCTCCAGTTTGGATGGAACCCCATTTCG ATCATCGCCCAGCTGTTGGGCCCCCGGCTCTGCTGCATCCTGTGCGGCTG CTTGTGTTGCCTGGTGTTCATTTTGAGCGTGATGTTCCTGCAGCCCATGT GGACGTTCCTCATCAATCTCGCCTTTAGTCTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig19796:3509..4793+

>mRNA_H-elongata_contig19796.5538.1 ID=mRNA_H-elongata_contig19796.5538.1|Name=mRNA_H-elongata_contig19796.5538.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig19796:3509..4793+ (Himanthalia elongata Himel1 dioecious)
ATGAGCTCGGACGACCCACCGGACTCCAAGTGGATAAAGATGGAGAAGAT
CAACAGAAAAAACGGCAAAAAGATGAGCTCGGACGACCCACCGGACTCCA
AGTGGATAAAGATGGAGAAGATCAACAGAAAAAACGGCAAAAAGAAACCC
ATGGGACAGTGCCTCATCGGTATCCAGATATTCCCGGTGGAGAAGGCAGA
AGCGCAGCCGGTGGGCATGGGCAGGAAGGAGCCGAACGACTCTCCCTTCT
TGCCCCCGCCGACTGGCCGCCTCCAGTTTGGATGGAACCCCATTTCGATC
ATCGCCCAGCTGTTGGGCCCCCGGCTCTGCTGCATCCTGTGCGGCTGCTT
GTGTTGCCTGGTGTTCATTTTGAGCGTGATGTTCCTGCAGCCCATGTGGA
CGTTCCTCATCAATCTCGCCTTTAGTCTGTAAAAACCCATGGGACAGTGC
CTCATCGGTATCCAGATATTCCCGGTGGAGAAGGCAGAAGCGCAGCCGGT
GGGCATGGGCAGGAAGGAGCCGAACGACTCTCCCTTCTTGCCCCCGCCGA
CTGGCCGCCTCCAGTTTGGATGGAACCCCATTTCGATCATCGCCCAGCTG
TTGGGCCCCCGGCTCTGCTGCATCCTGTGCGGCTGCTTGTGTTGCCTGGT
GTTCATTTTGAGCGTGATGTTCCTGCAGCCCATGTGGACGTTCCTCATCA
ATCTCGCCTTTAGTCTGTAA
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