mRNA_H-elongata_contig197752.5527.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197752.5527.1
Unique NamemRNA_H-elongata_contig197752.5527.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197752.5527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197752contigH-elongata_contig197752:604..1043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size440
Cds size417
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930117.7088358-UTR-H-elongata_contig197752:603..6261622930117.7088358-UTR-H-elongata_contig197752:603..626Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig197752 604..626 +
1691679287.4574246-UTR-H-elongata_contig197752:603..6261691679287.4574246-UTR-H-elongata_contig197752:603..626Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig197752 604..626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930117.7222438-CDS-H-elongata_contig197752:626..10431622930117.7222438-CDS-H-elongata_contig197752:626..1043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197752 627..1043 +
1691679287.4714448-CDS-H-elongata_contig197752:626..10431691679287.4714448-CDS-H-elongata_contig197752:626..1043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197752 627..1043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197752.5527.1prot_H-elongata_contig197752.5527.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197752 627..1043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197752.5527.1

>prot_H-elongata_contig197752.5527.1 ID=prot_H-elongata_contig197752.5527.1|Name=mRNA_H-elongata_contig197752.5527.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MKAFQMFEDSLAAFAIALLFLRSAFDATAAGGFSDGTDCACEACAGAASV
ELVWLTGGSSLITLLMSSAYSCSSLVPSQCSAHAWPSKSKTSSVTTPCFA
LVFNSWNWSVVNAPLCLSLPNSALTRSKAAAFMDNNSAC
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mRNA from alignment at H-elongata_contig197752:604..1043+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197752.5527.1 ID=mRNA_H-elongata_contig197752.5527.1|Name=mRNA_H-elongata_contig197752.5527.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=440bp|location=Sequence derived from alignment at H-elongata_contig197752:604..1043+ (Himanthalia elongata Himel1 dioecious)
CCGGTTTGCCTCCCTGGCCTCGGATGAAGGCGTTCCAAATGTTCGAGGAT
TCCTTGGCGGCCTTCGCCATCGCGTTGCTTTTCCTCCGATCGGCTTTTGA
TGCTACAGCCGCAGGAGGATTCAGTGATGGTACCGATTGTGCTTGCGAGG
CCTGTGCAGGAGCCGCCTCTGTCGAGCTAGTCTGGCTGACCGGTGGTAGC
TCGCTTATCACGTTGCTGATGTCCTCAGCGTACTCCTGCTCGTCGCTCGT
ACCATCGCAGTGCAGTGCCCATGCCTGGCCCAGTAAGTCTAAAACCTCGT
CTGTGACTACCCCATGTTTCGCTTTGGTCTTCAACAGTTGGAACTGGTCT
GTGGTCAACGCTCCCTTGTGCCTCAGCTTGCCCAACTCGGCCTTGACGCG
GAGTAAGGCCGCAGCGTTCATGGACAACAACAGTGCTTGC
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Coding sequence (CDS) from alignment at H-elongata_contig197752:604..1043+

>mRNA_H-elongata_contig197752.5527.1 ID=mRNA_H-elongata_contig197752.5527.1|Name=mRNA_H-elongata_contig197752.5527.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig197752:604..1043+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGCGTTCCAAATGTTCGAGGATTCCTTGGCGGCCTTCGCCATCGC
GTTGCTTTTCCTCCGATCGGCTTTTGATGCTACAGCCGCAGGAGGATTCA
GTGATGGTACCGATTGTGCTTGCGAGGCCTGTGCAGGAGCCGCCTCTGTC
GAGCTAGTCTGGCTGACCGGTGGTAGCTCGCTTATCACGTTGCTGATGTC
CTCAGCGTACTCCTGCTCGTCGCTCGTACCATCGCAGTGCAGTGCCCATG
CCTGGCCCAGTAAGTCTAAAACCTCGTCTGTGACTACCCCATGTTTCGCT
TTGGTCTTCAACAGTTGGAACTGGTCTGTGGTCAACGCTCCCTTGTGCCT
CAGCTTGCCCAACTCGGCCTTGACGCGGAGTAAGGCCGCAGCGTTCATGG
ACAACAACAGTGCTTGCATGAAGGCGTTCCAAATGTTCGAGGATTCCTTG
GCGGCCTTCGCCATCGCGTTGCTTTTCCTCCGATCGGCTTTTGATGCTAC
AGCCGCAGGAGGATTCAGTGATGGTACCGATTGTGCTTGCGAGGCCTGTG
CAGGAGCCGCCTCTGTCGAGCTAGTCTGGCTGACCGGTGGTAGCTCGCTT
ATCACGTTGCTGATGTCCTCAGCGTACTCCTGCTCGTCGCTCGTACCATC
GCAGTGCAGTGCCCATGCCTGGCCCAGTAAGTCTAAAACCTCGTCTGTGA
CTACCCCATGTTTCGCTTTGGTCTTCAACAGTTGGAACTGGTCTGTGGTC
AACGCTCCCTTGTGCCTCAGCTTGCCCAACTCGGCCTTGACGCGGAGTAA
GGCCGCAGCGTTCATGGACAACAACAGTGCTTGC
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